MP

Mikhail POOGGIN

INRAE Research director and Team leader at PHIM (Plant Health Institute of Montpellier)
76 %
Libre accès
55
Documents
Affiliations actuelles
  • Institut National de Recherche pour l’Agriculture, l’Alimentation et l’Environnement (INRAE)
  • Plant Health Institute of Montpellier (UMR PHIM)
Contact

Domaines de recherche

Sciences du Vivant [q-bio]

Compétences

RNAi small RNA gene silencing virology plant insect

Publications

Publications

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Summary of taxonomy changes ratified by the International Committee on Taxonomy of Viruses from the Plant Viruses Subcommittee, 2025

Luisa Rubino , Peter Abrahamian , Wenxia An , Miguel Aranda , José T Ascencio-Ibañez et al.

Journal of General Virology, 2025, 106 (7), pp.002114. ⟨10.1099/jgv.0.002114⟩

Article dans une revue hal-05190019v1
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A Novel Parvovirus Associated with the Whitefly Bemisia tabaci

Fani Gousi , Zineb Belabess , Nathalie Laboureau , Michel Peterschmitt , Mikhail M Pooggin

Pathogens, 2025, 14 (7), pp.714. ⟨10.3390/pathogens14070714⟩

Article dans une revue hal-05190372v1
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Erratum for Chesnais et al., "Comparative Plant Transcriptome Profiling of Arabidopsis thaliana Col-0 and Camelina sativa var. Celine Infested with Myzus persicae Aphids Acquiring Circulative and Noncirculative Viruses Reveals Virus-and Plant-Specific Alterations Relevant to Aphid Feeding Behavior and Transmission

Quentin Chesnais , Victor Golyaev , Amandine Velt , Camille Rustenholz , Véronique Brault et al.

Microbiology Spectrum, 2024, 12 (10), ⟨10.1128/spectrum.01924-24⟩

Article dans une revue hal-04861396v1
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A new genus of alphasatellites associated with banana bunchy top virus in Southeast Asia

Valentin Guyot , Tien-Dung Trieu , Oudomphone Insisiengmay , Ting Zhang , Marie-Line Iskra-Caruana et al.

Virus Evolution, 2024, 10 (1), pp.vead076. ⟨10.1093/ve/vead076⟩

Article dans une revue hal-04531417v1
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Transcriptome and small RNAome profiling uncovers how a recombinant begomovirus evades RDRγ-mediated silencing of viral genes and outcompetes its parental virus in mixed infection

Margaux Jammes , Victor Golyaev , Alejandro Fuentes , Nathalie Laboureau , Cica Urbino et al.

PLoS Pathogens, 2024, 20 (1), pp.e1011941. ⟨10.1371/journal.ppat.1011941⟩

Article dans une revue hal-04531146v1
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Endogenous viral elements are targeted by RNA silencing pathways in banana

Pierre‐Olivier Duroy , Jonathan Seguin , Sébastien Ravel , Rajeswaran Rajendran , Nathalie Laboureau et al.

New Phytologist, 2024, 244 (4), pp.1519-1536. ⟨10.1111/nph.20112⟩

Article dans une revue hal-04767201v1
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Deep Sequencing Analysis of Virome Components, Viral Gene Expression and Antiviral RNAi Responses in Myzus persicae Aphids

Natalia Sukhikh , Victor Golyaev , Nathalie Laboureau , Gabriel Clavijo , Camille Rustenholz et al.

International Journal of Molecular Sciences, 2024, 25, pp.13199. ⟨10.3390/ijms252313199⟩

Article dans une revue hal-04867733v1
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Cannabis Virome Reconstruction and Antiviral RNAi Characterization through Small RNA Sequencing

Niccolo Miotti , Natalia Sukhikh , Nathalie Laboureau , Paola Casati , Mikhail M Pooggin

Plants, 2023, 12 (23), pp.3925. ⟨10.3390/plants12233925⟩

Article dans une revue hal-04531033v1
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Evidence for Dicot Plants as Alternative Hosts of Banana Bunchy Top Virus and Its Alphasatellites in South-East Asia

Valentin Guyot , Ngoc-Sam Ly , Tien-Dung Trieu , Oudomphone Insisiengmay , Ting Zhang et al.

Pathogens, 2023, 12 (11), pp.1289. ⟨10.3390/pathogens12111289⟩

Article dans une revue hal-04532281v1
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Transcriptomic alterations in the sweet orange vasculature correlate with growth repression induced by a variant of citrus tristeza virus

Vicken Aknadibossian , Jose C Huguet-Tapia , Victor Golyaev , Mikhail M. Pooggin , Svetlana Y Folimonova

Frontiers in Microbiology, 2023, 14, pp.1162613. ⟨10.3389/fmicb.2023.1162613⟩

Article dans une revue hal-04176634v1
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A newly emerging alphasatellite affects banana bunchy top virus replication, transcription, siRNA production and transmission by aphids

Valentin Guyot , Rajendran Rajeswaran , Huong Cam Chu , Chockalingam Karthikeyan , Nathalie Laboureau et al.

PLoS Pathogens, 2022, 18 (4), pp.e1010448. ⟨10.1371/journal.ppat.1010448⟩

Article dans une revue pasteur-03659357v1
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Transcriptome responses of the aphid vector Myzus persicae are shaped by identities of the host plant and the virus

Quentin Chesnais , Victor Golyaev , Amandine Velt , Camille Rustenholz Russell , Maxime Verdier et al.

Peer Community Journal, 2022, 2, pp.e82. ⟨10.24072/pcjournal.208⟩

Article dans une revue hal-03942207v1

GENOME SEQUENCE ANALYSIS, RT-PCR DIAGNOSTICS AND CONSTRUCTION OF VIRAL PROTEIN-EXPRESSION CASSETES FOR KAZAKH ISOLATE OF ORDINARY AND ANDEAN STRAINS OF POTATO VIRUS S

A.M. Alexandrova , Y.A. Yeriskina , R.M. Nargilova , R.V. Kryldakov , Zh.A. Tokbergenova et al.

Eurasian Journal of Applied Biotechnology, 2022, 2, pp.72-82. ⟨10.11134/btp.2.2022.10⟩

Article dans une revue hal-04948862v1
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Comparative Plant Transcriptome Profiling of Arabidopsis thaliana Col-0 and Camelina sativa var. <i>Celine</i> Infested with Myzus persicae Aphids Acquiring Circulative and Noncirculative Viruses Reveals Virus- and Plant-Specific Alterations Relevant to Aphid Feeding Behavior and Transmission

Quentin Chesnais , Victor Golyaev , Amandine Velt , Camille Rustenholz , Véronique Brault et al.

Microbiology Spectrum, 2022, 10 (4), pp.e00136-22. ⟨10.1128/spectrum.00136-22⟩

Article dans une revue hal-03747649v1
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Virus Elimination from Naturally Infected Field Cultivars of Potato (Solanum tuberosum) by Transgenic RNA Interference

Alyona Alexandrova , Oxana Karpova , Ruslan Kryldakov , Victor Golyaev , Rufina Nargilova et al.

International Journal of Molecular Sciences, 2022, 23 (14), pp.8020. ⟨10.3390/ijms23148020⟩

Article dans une revue hal-03747765v1
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Topical Application of Double-Stranded RNA Targeting 2b and CP Genes of Cucumber mosaic virus Protects Plants against Local and Systemic Viral Infection

Maria Holeva , Athanasios Sklavounos , Rajendran Rajeswaran , Mikhail M. Pooggin , Andreas Voloudakis

Plants, 2021, 10 (5), pp.963. ⟨10.3390/plants10050963⟩

Article dans une revue hal-03747778v1
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Identification and Molecular Characterization of a Novel Hordeivirus Associated With Yellow Mosaic Disease of Privet (Ligustrum vulgare) in Europe

Jean-Sébastien Reynard , Silvia Turco , Justine Brodard , Isabelle Kellenberger , François Maclot et al.

Frontiers in Microbiology, 2021, 12, ⟨10.3389/fmicb.2021.723350⟩

Article dans une revue hal-03408043v1
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Cauliflower mosaic virus protein P6‐TAV plays a major role in alteration of aphid vector feeding behaviour but not performance on infected Arabidopsis

Quentin Chesnais , Maxime Verdier , Myriam Burckbuchler , Véronique Brault , Mikhail M. Pooggin et al.

Molecular Plant Pathology, 2021, 22 (8), pp.911-920. ⟨10.1111/mpp.13069⟩

Article dans une revue hal-03239295v1

Extrachromosomal viral DNA produced by transcriptionally active endogenous viral elements in non-infected banana hybrids impedes quantitative PCR diagnostics of banana streak virus infections in banana hybrids

Emeline Ricciuti , Nathalie Laboureau , Guy Noumbissié , Matthieu Chabannes , Natalia Sukhikh et al.

Journal of General Virology, 2021, 102 (11), ⟨10.1099/jgv.0.001670⟩

Article dans une revue hal-03434196v1
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ICTV Virus Taxonomy Profile: Caulimoviridae

Pierre-Yves Teycheney , Andrew D W Geering , Idranil Dasgupta , Roger Hull , Jan F Kreuze et al.

Journal of General Virology, 2020, 101 (10), pp.1025 - 1026. ⟨10.1099/jgv.0.001497⟩

Article dans une revue hal-03025267v1
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Plant virome reconstruction and antiviral RNAi characterization by deep sequencing of small RNAs from dried leaves

Victor Golyaev , Thierry Candresse , Frank Rabenstein , Mikhail Pooggin

Scientific Reports, 2019, 9, ⟨10.1038/s41598-019-55547-3⟩

Article dans une revue hal-02628261v1

Virus detection by high-throughput sequencing of small RNAs: large scale performance testing of sequence analysis strategies

Sébastien Massart , Michela Chiumenti , Kris de Jonghe , Rachel Glover , Annelies Haegeman et al.

Phytopathology, 2019, 109 (3), pp.488-497. ⟨10.1094/PHYTO-02-18-0067-R⟩

Article dans une revue hal-02627121v1
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Small RNA-Omics for Virome Reconstruction and Antiviral Defense Characterization in Mixed Infections of Cultivated Solanum Plants

Silvia Turco , Victor Golyaev , Jonathan Seguin , Céline Gilli , Laurent Farinelli et al.

Molecular Plant-Microbe Interactions, 2018, 31 (7), pp.707-723. ⟨10.1094/MPMI-12-17-0301-R⟩

Article dans une revue hal-02628890v1
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Small RNA-Omics for Plant Virus Identification, Virome Reconstruction, and Antiviral Defense Characterization

Mikhail Pooggin

Frontiers in Microbiology, 2018, 9, ⟨10.3389/fmicb.2018.02779⟩

Article dans une revue hal-02624505v1
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Ortervirales: New Virus Order Unifying Five Families of Reverse-Transcribing Viruses

Mart Krupovic , Jonas Blomberg , John Coffin , Indranil Dasgupta , Hung Fan et al.

Journal of Virology, 2018, 92 (12), pp.e00515-18. ⟨10.1128/JVI.00515-18⟩

Article dans une revue pasteur-01977336v1
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Ribosome Shunting, Polycistronic Translation, and Evasion of Antiviral Defenses in Plant Pararetroviruses and Beyond

Mikhail M. Pooggin , Lyuba Ryabova

Frontiers in Microbiology, 2018, 9, pp.644. ⟨10.3389/fmicb.2018.00644⟩

Article dans une revue (article de synthèse) hal-02289592v1

RNAi-mediated resistance to viruses: a critical assessment of methodologies

Mikhail Pooggin

Current Opinion in Virology, 2017, 26, pp.28-35. ⟨10.1016/j.coviro.2017.07.010⟩

Article dans une revue hal-02625206v1
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Revisiting the roles of tobamovirus replicase complex proteins in viral replication and silencing suppression

Nachelli Malpica-Lopez , Rajendran Rajeswaran , Daria Beknazariants , Jonathan Seguin , Victor Golyaev et al.

Molecular Plant-Microbe Interactions, 2017, in press (1), pp.1-97. ⟨10.1094/mpmi-07-17-0164-r⟩

Article dans une revue hal-01607395v1

Viral protein suppresses oxidative burst and salicylic acid-dependent autophagy and facilitates bacterial growth on virus-infected plants

Anna S. Zvereva , Victor Golyaev , Silvia Turco , Ekaterina G. Gubaeva , Rajendran Rajeswaran et al.

New Phytologist, 2016, 211 (3), pp.1020-1034. ⟨10.1111/nph.13967⟩

Article dans une revue hal-02639310v1

Field Trial and Molecular Characterization of RNAi-Transgenic Tomato Plants That Exhibit Resistance to Tomato Yellow Leaf Curl Geminivirus

Alejandro Fuentes , Natacha Carlos , Yoslaine Ruiz , Danay Callard , Yadira Sanchez et al.

Molecular Plant-Microbe Interactions, 2016, 29 (3), pp.197-209. ⟨10.1094/MPMI-08-15-0181-R⟩

Article dans une revue hal-02639315v1

MISIS-2: A bioinformatics tool for in-depth analysis of small RNAs and representation of consensus master genome in viral quasispecies

Jonathan Seguin , Patricia Otten , Loic Baerlocher , Laurent Farinelli , Mikhail Pooggin

Journal of Virological Methods, 2016, 233, pp.37-40. ⟨10.1016/j.jviromet.2016.03.005⟩

Article dans une revue hal-02636856v1
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Emergence of a Latent Indian Cassava Mosaic Virus from Cassava Which Recovered from Infection by a Non-Persistent Sri Lankan Cassava Mosaic Virus

Chockalingam Karthikeyan , Basavaprabhu L. Patil , Basanta K. Borah , Thulasi R. Resmi , Silvia Turco et al.

Viruses, 2016, 8 (10), ⟨10.3390/v8100264⟩

Article dans une revue hal-02634441v1

Interactions of Rice Tungro Bacilliform Pararetrovirus and Its Protein P4 with Plant RNA-Silencing Machinery

Rajendran Rajeswaran , Victor Golyaev , Jonathan Seguin , Anna S. Zvereva , Laurent Farinelli et al.

Molecular Plant-Microbe Interactions, 2014, 27 (12), pp.1370-1378. ⟨10.1094/MPMI-07-14-0201-R⟩

Article dans une revue hal-02637328v1

MISIS: A bioinformatics tool to view and analyze maps of small RNAs derived from viruses and genomic loci generating multiple small RNAs

Jonathan Seguin , Patricia Otten , Loic Baerlocher , Laurent Farinelli , Mikhail Pooggin

Journal of Virological Methods, 2014, 195, pp.120-122. ⟨10.1016/j.jviromet.2013.10.013⟩

Article dans une revue hal-02641307v1

Evasion of Short Interfering RNA-Directed Antiviral Silencing in Musa acuminata Persistently Infected with Six Distinct Banana Streak Pararetroviruses

Rajendran Rajeswaran , Jonathan Seguin , Matthieu Chabannes , Pierre-Olivier Duroy , Nathalie Laboureau et al.

Journal of Virology, 2014, 88 (19), pp.11516-11528. ⟨10.1128/JVI.01496-14⟩

Article dans une revue hal-02637162v1
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De Novo Reconstruction of Consensus Master Genomes of Plant RNA and DNA Viruses from siRNAs

Jonathan Seguin , Rajendran Rajeswaran , Nachelli Malpica-Lopez , Robert R. Martin , Kristin Kasschau et al.

PLoS ONE, 2014, 9 (2), ⟨10.1371/journal.pone.0088513⟩

Article dans une revue hal-02634925v1

Short ORF-dependent ribosome shunting operates in an RNA picorna-like virus and a DNA pararetrovirus that cause rice tungro disease

M.M. Pooggin , R. Rajeswaran , M. Schepetilnikov , L. Ryabova

PLoS Pathogens, 2012, 8 (3), pp.e1002568. ⟨10.1371/journal.ppat.1002568⟩

Article dans une revue hal-00680362v1

Specific impact of tobamovirus infection on the Arabidopsis small RNA profile

Q. Hu , J. Hollunder , A. Niehl , C.J Kørner , D. Gereige et al.

PLoS ONE, 2011, 6 (5), pp.e19549. ⟨10.1371/journal.pone.0019549⟩

Article dans une revue hal-00595540v1

Translation reinitiation and leaky scanning in plant viruses

La Ryabova , Mm Pooggin , T. Hohn

Virus research., 2006, 119, pp.52-62

Article dans une revue hal-00093222v1

Mechanism of ribosome shunting in Rice tungro bacilliform pararetrovirus

Mm Pooggin , La Ryabova , X. He , J. Futterer , T. Hohn

RNA, 2006, 12, pp.841-850

Article dans une revue hal-00093210v1

A virus-induced gene silencing (VIGS) approach to study plant-geminivirus-insect vector interactions and virus transmission

Fani Gousi , Mikhail M. Pooggin , Michel Peterschmitt , Cica Urbino , Martine Granier et al.

ESOVE 2024 - 23. European Society for Vector Ecology Conference, Oct 2024, Montpellier, France. , pp.S4-P13

Poster de conférence hal-05007882v1
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Cannabis virome reconstruction and antiviral rnai characterization by small rna sequencing

Niccolo Miotti , Natalia Sukhikh , Nathalie Laboureau , Paola Casati , Mikhail Pooggin

12. International Congress of Plant Pathology (ICPP 2023), Aug 2023, Lyon, France. ISPP, pp.808, 2023

Poster de conférence hal-05181006v1
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Differential plant transcriptomic responses induced by phloem-restricted and non-phloem-restricted viruses: consequences for host-vector interactions

Quentin Chesnais , Victor Golyaev , Amandine Velt , Maxime Verdier , Véronique Brault et al.

18. Rencontres de Virologie Végétale (RVV 2021), Sep 2021, Aussois, France

Poster de conférence hal-04754108v1

Infective endogenous viral elements are tightly controlled by RNA silencing pathways in banana

Pierre-Olivier Duroy , Jonathan Seguin , Sébastien Ravel , Rajendran Rajeswaran , Nathalie Laboureau et al.

EpiCATCH COST Action Conference on "Epigenetic Mechanisms of Crop Adaptation to Climate Change", Jul 2021, Firenze, Italy. COST, pp.13, 2021

Poster de conférence hal-05177591v1

Molecular characterization of the complexity in banana bunchy top virus genome. [P.57]

Rajendran Rajeswaran , Valentin Guyot , Nathalie Laboureau , Serge Galzi , Marie-Line Caruana et al.

17. Rencontres de Virologie Végétale (RVV 2019), Jan 2019, Aussois, France. INRA, pp.116-116, 2019

Poster de conférence hal-05173721v1

High Throughput Sequencing of siRNAs and virus diagnostic: does sequence analysis strategies really matter? Results of an international proficiency testing

Sébastien Massart , Ian Adams , Michela Chiumenti , Kris de Jonghe , Igor Koloniuk et al.

16. Rencontres de Virologie Végétale (RVV 2017), Jan 2017, Aussois, France. 2017

Poster de conférence hal-01604506v1
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Detection of cryptic viruses and characterization of antiviral defense in Cannabis sativa through small RNA sequencing

Niccolo Miotti , Natalia Sukhikh , Nathalie Laboureau , Paola Casati , Mikhail Pooggin

National Congress of the Italian Society for Virology, SIV, Jun 2023, Brescia, Italy. 1 p

Communication dans un congrès hal-05180546v1

Do DCL proteins play a role in the viral manipulation of host plants and vectors?

Quentin Chesnais , Maxime Verdier , Véronique Brault , Mikhail M. Pooggin , M. Drucker

19. Rencontres de virologie végétale (RVV 2023), Jan 2023, Aussois, France

Communication dans un congrès hal-04753694v1
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Tomato yellow leaf curl virus- IS76, a textbook case of viral emergence triggered by host shift

Margaux Jammes , Cica Urbino , Mikhail Pooggin , Clémence Plissonneau , Michel Peterschmitt

31. International Horticultural Congress (IHC2022): International Symposium on Water: a Worldwide Challenge for Horticulture!, ISHS, Aug 2022, Angers, France. 1 p

Communication dans un congrès hal-05179810v1
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Molecular determinants of the selective advantage of an invasive recombinant begomovirus in tomato plants carrying a Ty-1 resistance gene

Margaux Jammes , Victor Golyaev , Clémence Plissonneau , Cica Urbino , Michel Peterschmitt et al.

International Symposium on ssDNA Viruses (IS3DV), SFV, Sep 2022, Sète, France. 1 p

Communication dans un congrès hal-05179828v1
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A newly emerging alphasatellite of banana bunchy top virus affects viral replication, transcription, siRNA production and transmission by aphids

Valentin Guyot , Rajendran Rajeswaran , Huong Cam Chu , Chockalingam Karthikeyan , Nathalie Laboureau et al.

18. Rencontres de Virologie Végétale (RVV 2021), SFV, Sep 2021, Aussois, France. pp.14

Communication dans un congrès hal-05179927v1

A novel alphasatellite associated with Banana bunchy top virus

Valentin Guyot , Rajendran Rajeswaran , Nathalie Laboureau , Serge Galzi , Marie-Line Caruana et al.

17. Rencontres de Virologie Végétale (RVV 2019), INRA; CIRAD; CNRS; SFP; SFV, Jan 2019, Aussois, France. pp.38-38

Communication dans un congrès hal-05173699v1

Viruses too divergent for detection by Blast searches: a novel higher order viral taxon in viral metagenomes from the Kerguelen islands and southwest France

Laurence Svanella-Dumas , Yuxin Ma , Armelle Marais , Sébastien Theil , Chantal Faure et al.

17. Rencontres de Virologie Végétale (RVV 2019), Jan 2019, Aussois, France

Communication dans un congrès hal-02737924v1
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Comment les plantes se défendent-elles face aux virus ?

Sylvie German-Retana , Mikhail M. Pooggin , Jean-Luc Gallois , Diana Ortiz , Benoît Moury

L'immunité des plantes. Pour des cultures résistantes aux maladies, Editions Quae, pp.65-75, 2021, 9782759232338

Chapitre d'ouvrage hal-03131013v1

Role of Small RNAs in Virus-Host Interaction

Mikhail Pooggin

Plant-Virus Interactions : Molecular Biology, Intra- and Intercellular Transport, Chapter 6, Springer International Publishing, 189 p., 2016, 978-3-319-25487-6. ⟨10.1007/978-3-319-25489-0_6⟩

Chapitre d'ouvrage hal-02798767v1