Nicolas Francillonne
Présentation
Publications
Publications
RepetDB: a database of reference TE sequences and their informationAnnual meeting Mobil-ET, GDR CNRS 3546, Dec 2025, Paris, France |
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RepetDB: A transposable element databasePlant and Genome Conference PAG, Jan 2025, San Diego (California), United States |
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Genetic Resources Data Exchange and Findability for the French Plant Genebanks Using BrAPIPAG 32, Jan 2025, San Diego (CA), United States |
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Les services de FAIRification des données à l’URGI : cas d’utilisation par des projets/consortium nationaux et internationauxRéunion annuelle de l'IFB, Dec 2025, Paris, France |
Insertion et exploitation de données hétérogènes dans un graphe de connaissanceJournées du PEPI IBIS 2023, PEPI Ingénierie Bio Informatique et Statistique pour les données haut-débit (IBIS), Sep 2023, Paris, France |
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Linking heterogeneous data from model plant species in a graph databaseSéminaire résidentiel INRAE Semantic Linked Data édition 2023, réseau IN-OVIVE "Intégration de sources/masses de données hétérogènes et ontologies", Oct 2023, Agde, France |
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Transposable elements, from their annotation to their integration into knowledge graphsJournée thématique - Annotation, Intelligence Artificielle et Text-mining, PEPI IBIS, Nov 2022, Jouy-en-Josas, France |
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Mise en relation de données hétérogènes chez l’espèce modèle Arabidopsis thaliana dans une base de données grapheWork4Graph Integration, Dec 2021, Paris, France |
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RepetDB: a unified resource for transposable element referencesJournées Ouvertes en Biologie, Informatique et Mathématiques (JOBIM) 2022, SFBI; IFB; GDR BIM, Jul 2022, Rennes, France |
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An integrated information system dedicated to oak genomics and geneticsPAG XXVI Plant and Animal Genome Conference, Jan 2018, San Diego, United States. pp.27 slides |
Oak genome sequencing and evolutionGenomics and Forest Tree Genetics Conference, Institut National de Recherche Agronomique (INRA). UMR Biodiversité, Gènes et Communautés (1202)., May 2016, Arcachon, France. 134 p |
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Annotation of the oak genome sequence and associated bioinformatic resourcesIUFRO Genomics and Forest Tree Genetics, Institut National de Recherche Agronomique (INRA). UMR Biodiversité, Gènes et Communautés (1202)., May 2016, Arcachon, France. 134 p |
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URGI – A scientific facility dedicated to plant bioinformaticsJOBIM 2025, Jul 2025, Bordeaux (France), France |
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RepetDB: A TE databaseInternational congress on transposable elements ICTE, Apr 2024, Saint Malo, France |
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Research Data Management Toolkit (RDMkit): guidelines for plant phenotyping data management and sharing7. International Plant Phenotyping Symposium (IPPS 2022), Sep 2022, Wageningen, Netherlands. , 2022, ⟨10.5281/zenodo.7148792⟩ |
Detection of WUE positional candidate genes by combining QTL maps and BAC sequencing with the annotated oak genome sequenceGenomics and Forest Tree Genetics Conference, May 2016, Arcachon, France. , 134 p., 2016, Book of abstracts |
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Benchmarks for transcript assembly and differential gene expression (new isoforms) analysis in the context of transposable elementsAssemblée Générale France Génomique 2015, Nov 2015, Paris, France. 2015 |
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A computational architecture designed for genome annotation: oak genome sequencing project as a use caseJOBIM 2015 - Journées Ouvertes Biologie Informatique Mathématiques, Jul 2015, Clermont-ferrand, France. 2015 |
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Traces of transposable elements in genome dark matter co-opted by flowering gene regulation networks2020 |