NP

Nicolas Parisot

Assistant Professor, PhD in Bioinformatics
165
Documents
Affiliation actuelle
  • Biologie Fonctionnelle, Insectes et Interactions (BF2I)

Présentation

Positions

  • 2015-now: Assistant Professor at INSA Lyon and BF2I Lab
  • 2014-2015: Fixed term Assistant Professor (French ATER) at INSA Lyon and BF2I Lab. "High-throughput genomics and transcriptomics to study insect symbioses"
  • 2011-2014: PhD student, Université Blaise Pascal (Clermont-Ferrand II, France), LMGE and CIDAM labs. "Selection of oligonucleotide probes for high-throughput study of complex environments"

Academic degrees

  • 2011-2014: PhD thesis in Bioinformatics and Microbial Ecology, Université Blaise Pascal (Clermont-Ferrand II, France)
  • 2010-2011: Master of Science in Biostatistics and Bioinformatics, Université Claude Bernard (Lyon I, France)
  • 2008-2011: Master of Engineering degree in Bioinformatics and Modelling, INSA Lyon, France
  • 2006-2008: Technology degree in Bioinformatics, Université d'Auvergne (Aurillac, France)


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Publications

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Phytophthora alni Infection Reinforces the Defense Reactions in Alnus glutinosa - Frankia Roots to the Detriment of Nodules

Mathilde Vincent , Hasna Boubakri , Pascale Fournier , Nicolas Parisot , Pierre Pétriacq et al.

Molecular Plant-Microbe Interactions, 2025, 38 (3), pp.463-478. ⟨10.1094/MPMI-12-24-0160-R⟩

Article dans une revue hal-04935102v1
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Annotation of transcription factors, chromatin-associated factors, and basal transcription machinery in the pea aphid, Acyrthosiphon pisum, and development of the ATFdb database, a resource for studies of transcriptional regulation

Nicolas Parisot , Mélanie Ribeiro Lopes , Sergio Peignier , Patrice Baa-Puyoulet , Hubert Charles et al.

Insect Biochemistry and Molecular Biology, 2025, 177, pp.104217. ⟨10.1016/j.ibmb.2024.104217⟩

Article dans une revue hal-04832131v1

Frankia Root Nodulation Alters the Molecular Defence Responses Against Phytophthora alni Infection in Alnus glutinosa

Mathilde Vincent , Hasna Boubakri , Pascale Fournier , Nicolas Parisot , Guylaine Miotello et al.

Plant Pathology, 2025, ⟨10.1111/ppa.14105⟩

Article dans une revue hal-05128776v1
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ArtSymbioCyc, a metabolic network database collection dedicated to arthropod symbioses: a case study, the tripartite cooperation in Sipha maydis

Patrice Baa-Puyoulet , Léo Gerlin , Nicolas Parisot , Sergio Peignier , François Renoz et al.

mSystems, 2025, 10 (4), ⟨10.1128/msystems.00140-25⟩

Article dans une revue hal-04987746v1
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High‐Throughput Tn‐Seq Screens Identify Both Known and Novel Pseudomonas putida KT2440 Genes Involved in Metal Tolerance

Kevin Royet , Laura Kergoat , Stefanie Lutz , Charlotte Oriol , Nicolas Parisot et al.

Environmental Microbiology, 2025, 27 (5), pp.e70095. ⟨10.1111/1462-2920.70095⟩

Article dans une revue hal-05128789v1
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Bacterial tubular networks channel carbohydrates in insect endosymbiosis

Séverine Balmand , Camille Rivard , Sergio Peignier , Rachel Santarella-Mellwig , Meriem Ghanem-Debbache et al.

Cell, 2025, 188 (26), pp.7355-7365. ⟨10.1016/j.cell.2025.10.001⟩

Article dans une revue hal-05395665v1
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Dual-transcriptomics on microdissected cells reveals functional specialisation of symbiont-bearing-cells and contrasted responses to nutritional stress in the cereal weevil

Nikoletta Galambos , Nicolas Parisot , Agnès Vallier , Claudia Bevilacqua , Séverine Balmand et al.

Microbiome, 2025, 13 (1), pp.182. ⟨10.1186/s40168-025-02164-0⟩

Article dans une revue hal-05220930v1

Cereal weevils' antimicrobial peptides: at the crosstalk between development, endosymbiosis and immune response

N. Galambos , C. Vincent-Monegat , A. Vallier , N. Parisot , A. Heddi et al.

Philosophical Transactions of the Royal Society B: Biological Sciences, 2024, 379 (1901), pp.20230062. ⟨10.1098/rstb.2023.0062⟩

Article dans une revue hal-04632867v1
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MicroAnnot: A Dedicated Workflow for Accurate Microsporidian Genome Annotation

Jérémy Tournayre , Valérie Polonais , Ivan Wawrzyniak , Reginald Florian Akossi , Nicolas Parisot et al.

International Journal of Molecular Sciences, 2024, 25 (2), pp.880. ⟨10.3390/ijms25020880⟩

Article dans une revue hal-04427987v1
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PacBio Hi-Fi genome assembly of Sipha maydis, a model for the study of multipartite mutualism in insects

François Renoz , Nicolas Parisot , Patrice Baa-Puyoulet , Léo Gerlin , Samir Fakhour et al.

Scientific Data , 2024, 11 (1), pp.450. ⟨10.1038/s41597-024-03297-x⟩

Article dans une revue hal-04632873v1
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Differential responses of Ceratitis capitata to infection by the entomopathogenic fungus Purpureocillium lilacinum

Wafa Djobbi , Meriem Msaad Guerfali , Agnès Vallier , Kamel Charaabi , Hubert Charles et al.

PLoS ONE, 2023, 18 (9), pp.e0286108. ⟨10.1371/journal.pone.0286108⟩

Article dans une revue hal-04227067v1
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Coordination of host and endosymbiont gene expression governs endosymbiont growth and elimination in the cereal weevil Sitophilus spp.

Mariana Galvão Ferrarini , Agnès Vallier , Carole Vincent-Monégat , Elisa Dell’aglio , Benjamin Gillet et al.

Microbiome, 2023, 11 (1), pp.274. ⟨10.1186/s40168-023-01714-8⟩

Article dans une revue hal-04345509v1
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Endosymbiont-containing germarium transcriptional survey in a cereal weevil depicts downregulation of immune effectors at the onset of sexual maturity

Mariana Galvão Ferrarini , Agnès Vallier , Elisa Dell’aglio , Séverine Balmand , Carole Vincent-Monégat et al.

Frontiers in Physiology, 2023, 14, pp.1142513. ⟨10.3389/fphys.2023.1142513⟩

Article dans une revue hal-04045330v1
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GReNaDIne: A Data-Driven Python Library to Infer Gene Regulatory Networks from Gene Expression Data

Pauline Schmitt , Baptiste Sorin , Timothée Frouté , Nicolas Parisot , Federica Calevro et al.

Genes, 2023, 14 (2), pp.269. ⟨10.3390/genes14020269⟩

Article dans une revue hal-04045297v1
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Evolutionary diversification of insulin-related peptides (IRPs) in aphids and spatiotemporal distribution in Acyrthosiphon pisum

C. Huygens , Mélanie Ribeiro Lopes , Karen Gaget , G. Duport , S. Peignier et al.

Insect Biochemistry and Molecular Biology, In press, 141, pp.103670. ⟨10.1016/j.ibmb.2021.103670⟩

Article dans une revue hal-03507324v1
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The Di-Symbiotic Systems in the Aphids Sipha maydis and Periphyllus lyropictus Provide a Contrasting Picture of Recent Co-Obligate Nutritional Endosymbiosis in Aphids

François Renoz , Jérôme Ambroise , Bertrand Bearzatto , Samir Fakhour , Nicolas Parisot et al.

Microorganisms, 2022, 10 (7), pp.1360. ⟨10.3390/microorganisms10071360⟩

Article dans une revue hal-03738802v1
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Aphid BCR4 Structure and Activity Uncover a New Defensin Peptide Superfamily

Karine Loth , Nicolas Parisot , Françoise Paquet , Hugo Terrasson , Catherine Sivignon et al.

International Journal of Molecular Sciences, 2022, 23 (20), pp.12480. ⟨10.3390/ijms232012480⟩

Article dans une revue hal-03862651v1
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Efficient compartmentalization in insect bacteriomes protects symbiotic bacteria from host immune system

Mariana Galvão Ferrarini , Elisa Dell’aglio , Agnès Vallier , Severine Balmand , Carole Vincent-Monégat et al.

Microbiome, 2022, 10 (1), pp.156. ⟨10.1186/s40168-022-01334-8⟩

Article dans une revue hal-03839252v1
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The transposable element-rich genome of the cereal pest Sitophilus oryzae

Nicolas Parisot , Carlos Vargas-Chávez , Clément Goubert , Patrice Baa-Puyoulet , Séverine Balmand et al.

BMC Biology, 2021, 19 (1), pp.241. ⟨10.1186/s12915-021-01158-2⟩

Article dans une revue hal-03627264v1
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Evolutionary novelty in the apoptotic pathway of aphids

Mélanie Ribeiro Lopes , Nicolas Parisot , Karen Gaget , Cissy Huygens , Sergio Peignier et al.

Proceedings of the National Academy of Sciences of the United States of America, 2020, 117 (51), pp.32545-32556. ⟨10.1073/pnas.2013847117⟩

Article dans une revue hal-03052353v1
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Sawfly genomes reveal evolutionary acquisitions that fostered the mega-radiation of parasitoid and eusocial Hymenoptera

Jan Philip Oeyen , Patrice Baa-Puyoulet , Joshua Benoit , Leo Beukeboom , Erich Bornberg-Bauer et al.

Genome Biology and Evolution, 2020, 12 (7), pp.1099-1118. ⟨10.1093/gbe/evaa106⟩

Article dans une revue hal-02618254v1
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Drosophila-associated bacteria differentially shape the nutritional requirements of their host during juvenile growth

Jessika Consuegra , Théodore Grenier , Patrice Baa-Puyoulet , Isabelle Rahioui , Houssam Akherraz et al.

PLoS Biology, 2020, 18 (3), pp.e3000681. ⟨10.1371/journal.pbio.3000681⟩

Article dans une revue hal-02919023v1

Spatial and morphological reorganization of endosymbiosis during metamorphosis accommodates adult metabolic requirements in a weevil

Justin Maire , Nicolas Parisot , Mariana Galvao Ferrarini , Agnès Vallier , Benjamin Gillet et al.

Proceedings of the National Academy of Sciences of the United States of America, 2020, 117 (32), pp.19347-19358. ⟨10.1073/pnas.2007151117⟩

Article dans une revue hal-03028766v1
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The genome sequence of the grape phylloxera provides insights into the evolution, adaptation, and invasion routes of an iconic pest

Claude Rispe , Fabrice Legeai , Paul Nabity , Rosa Fernández , Arinder Arora et al.

BMC Biology, 2020, 18 (1), pp.90. ⟨10.1186/s12915-020-00820-5⟩

Article dans une revue hal-02917617v1
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Weevil pgrp-lb prevents endosymbiont TCT dissemination and chronic host systemic immune activation

Justin Maire , Carole Vincent-Monégat , Severine Balmand , Agnès Vallier , Mireille Hervé et al.

Proceedings of the National Academy of Sciences of the United States of America, 2019, 116 (12), pp.5623-5632. ⟨10.1073/pnas.1821806116⟩

Article dans une revue hal-02139047v1
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Molecular evolutionary trends and feeding ecology diversification in the Hemiptera, anchored by the milkweed bug genome

Kristen Panfilio , Iris Vargas Jentzsch , Joshua Benoit , Deniz Erezyilmaz , Yuichiro Suzuki et al.

Genome Biology, 2019, 20 (1), pp.64. ⟨10.1186/s13059-019-1660-0⟩

Article dans une revue hal-02139052v1
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Identification by Tn-seq of Dickeya dadantii genes required for survival in chicory plants

Kévin Royet , Nicolas Parisot , Agnès Rodrigue , Erwan Gueguen , Guy Condemine

Molecular Plant Pathology, 2019, 20 (2), pp.287-306. ⟨10.1111/mpp.12754⟩

Article dans une revue hal-01922287v1
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Bacteriocyte cell death in the pea aphid/ Buchnera symbiotic system

Pierre Simonet , Karen Gaget , Severine Balmand , Mélanie Ribeiro Lopes , Nicolas Parisot et al.

Proceedings of the National Academy of Sciences of the United States of America, 2018, 115 (8), pp.E1819 - E1828. ⟨10.1073/pnas.1720237115⟩

Article dans une revue hal-01768487v1
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Bacteriocyte Reprogramming to Cope With Nutritional Stress in a Phloem Sap Feeding Hemipteran, the Pea Aphid Acyrthosiphon pisum

Stefano Colella , Nicolas Parisot , Pierre Simonet , Karen Gaget , Gabrielle Duport et al.

Frontiers in Physiology, 2018, 9, pp.1498. ⟨10.3389/fphys.2018.01498⟩

Article dans une revue hal-01905508v1
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Metatranscriptomics reveals the active bacterial and eukaryotic fibrolytic communities in the rumen of dairy cow fed a mixed diet

Sophie Marre , Nicolas Parisot , Pascale Lepercq , Frédérique Durand , Pascale Mosoni et al.

Frontiers in Microbiology, 2017, 8, pp.67-67. ⟨10.3389/fmicb.2017.00067⟩

Article dans une revue hal-01606055v1
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Comparative genomics of microsporidian genomes reveals a minimal non-coding RNA set and new insights for transcription in minimal eukaryotic genomes

Abdel Belkorchia , Jean-François Pombert , Valérie Polonais , Nicolas Parisot , Frédéric Delbac et al.

DNA Research, 2017, 24 (3), pp.251-260. ⟨10.1093/dnares/dsx002⟩

Article dans une revue hal-01594835v1
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Oral exposure to environmental pollutant benzo[a]pyrene impacts the intestinal epithelium and induces gut microbial shifts in murine model

Céline Ribière , Pierre Peyret , Nicolas Parisot , Claude Darcha , Pierre Déchelotte et al.

Scientific Reports, 2016, 6, pp.1-11. ⟨10.1038/srep31027⟩

Article dans une revue hal-02637913v1
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Distribution of dehalococcoidia in the anaerobic deep water of a remote meromictic crater lake and detection of dehalococcoidia-derived reductive dehalogenase homologous genes

Corinne Biderre-Petit , Eric Dugat-Bony , Mickaël Mege , Nicolas Parisot , Lorenz Adrian et al.

PLoS ONE, 2016, 11 (1), ⟨10.1371/journal.pone.0145558⟩

Article dans une revue hal-01599389v2
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Transcriptional profiling of Klebsiella pneumoniae defines signatures for planktonic, sessile and biofilm-dispersed cells

Cyril Guilhen , Nicolas Charbonnel , Nicolas Parisot , Nathalie Gueguen , Agnès Iltis et al.

BMC Genomics, 2016, 17 (1), ⟨10.1186/s12864-016-2557-x⟩

Article dans une revue hal-01394069v1
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Disruption of phenylalanine hydroxylase reduces adult lifespan and fecundity, and impairs embryonic development in parthenogenetic pea aphids

Pierre Simonet , Karen Gaget , Nicolas Parisot , Gabrielle Duport , Marjolaine Rey et al.

Scientific Reports, 2016, 6, pp.1-12. ⟨10.1038/srep34321⟩

Article dans une revue hal-01388523v1
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ArthropodaCyc: a CycADS powered collection of BioCyc databases to analyse and compare metabolism of arthropods

Patrice Baa-Puyoulet , Nicolas Parisot , Gérard Febvay , Jaime Huerta-Cepas , Augusto F Vellozo et al.

Database - The journal of Biological Databases and Curation, 2016, pp.1-9. ⟨10.1093/database/baw081⟩

Article dans une revue hal-01352558v1
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The Prediction and Validation of Small CDSs Expand the Gene Repertoire of the Smallest Known Eukaryotic Genomes

Abdel Belkorchia , Cyrielle Gasc , Valérie Polonais , Nicolas Parisot , Nicolas Gallois et al.

PLoS ONE, 2015, 10 (9), pp.1-12. ⟨10.1371/journal.pone.0139075⟩

Article dans une revue hal-01247479v1

Impact of clay mineral, wood sawdust or root organic matter on the bacterial and fungal community structures in two aged PAH-contaminated soils

Aurélie Cébron , Thierry Beguiristain , Jeanne Bongoua-Devisme , Jérémie Denonfoux , Pierre Faure et al.

Environmental Science and Pollution Research, 2015, 22 (18), pp.13724-13738. ⟨10.1007/s11356-015-4117-3⟩

Article dans une revue hal-01248748v1
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Weevil endosymbiont dynamics is associated with a clamping of immunity

F. Masson , Y. Moné , A. Vigneron , A. Vallier , N. Parisot et al.

BMC Genomics, 2015, 16 (1), pp.819. ⟨10.1186/s12864-015-2048-5⟩

Article dans une revue hal-01449139v1

Capturing prokaryotic dark matter genomes

C. Gasc , C. Ribière , N. Parisot , R. Beugnot , C. Defois et al.

Research in Microbiology, 2015, 166 (10), pp.814-830. ⟨10.1016/j.resmic.2015.06.001⟩

Article dans une revue hal-01449140v1

Draft Genomes of Three Strains Representative of the Bacillus anthracis Diversity Found in France

G. Girault , N. Parisot , E. Peyretaillade , P. Peyret , Sylviane Derzelle

Genome Announcements, 2014, 2 (4), pp.25081258. ⟨10.1128/genomeA.00736-14⟩

Article dans une revue hal-01110149v1
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Hijacking of Host Cellular Functions by an Intracellular Parasite, the Microsporidian Anncaliia algerae

Johan Panek , Hicham El Alaoui , Anne Mone , Serge Urbach , Edith Demettre et al.

PLoS ONE, 2014, 9 (6), pp.e100791. ⟨10.1371/journal.pone.0100791⟩

Article dans une revue hal-01053924v1
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PhylOPDb: a 16S rRNA oligonucleotide probe database for prokaryotic identification

Faouzi Jaziri , Nicolas Parisot , Anis Abid , Jérémie Denonfoux , C. Ribière et al.

Database - The journal of Biological Databases and Curation, 2014, 2014, pp.bau036. ⟨10.1093/database/bau036⟩

Article dans une revue hal-01612766v1
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Solution Hybrid Selection Capture for the Recovery of Functional Full-Length Eukaryotic cDNAs From Complex Environmental Samples

Claudia Bragalini , Céline Ribière , Nicolas Parisot , Laurent Vallon , Elsa Prudent et al.

DNA Research, 2014, 21 (6), pp.685-694. ⟨10.1093/dnares/dsu030⟩

Article dans une revue hal-02487472v1
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Large Scale Explorative Oligonucleotide Probe Selection for Thousands of Genetic Groups on a Computing Grid: Application to Phylogenetic Probe Design Using a Curated Small Subunit Ribosomal RNA Gene Database

Faouzi Jaziri , Eric Peyretaillade , Mohieddine Missaoui , Nicolas Parisot , Sébastien Cipière et al.

The Scientific World Journal, 2014, 2014, pp.350487. ⟨10.1155/2014/350487⟩

Article dans une revue hal-01110169v2
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Comparative genomics highlights the unique biology of Methanomassiliicoccales, a Thermoplasmatales-related seventh order of methanogenic archaea that encodes pyrrolysine.

Guillaume Borrel , Nicolas Parisot , Hugh Harris , Eric Peyretaillade , Nadia Gaci et al.

BMC Genomics, 2014, 15 (1), pp.679. ⟨10.1186/1471-2164-15-679⟩

Article dans une revue pasteur-01059404v1

Exploiting the architecture and the features of the microsporidian genomes to investigate diversity and impact of these parasites on ecosystems

E Peyretaillade , D Boucher , N Parisot , C Gasc , R Butler et al.

Heredity, 2014, pp.25182222. ⟨10.1038/hdy.2014.78⟩

Article dans une revue hal-01110134v1
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Microsporidian Genomes Harbor a Diverse Array of Transposable Elements that Demonstrate an Ancestry of Horizontal Exchange with Metazoans.

Nicolas Parisot , Adrian Pelin , Cyrielle Gasc , Valérie Polonais , Abdel Belkorchia et al.

Genome Biology and Evolution, 2014, 6 (9), pp.2289-300. ⟨10.1093/gbe/evu178⟩

Article dans une revue hal-01071789v1
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The Human Gut Chip ‘‘HuGChip’’, an Explorative Phylogenetic Microarray for Determining Gut Microbiome Diversity at Family Level

William Tottey , Jeremie Denonfoux , Faouzi Jaziri , Nicolas Parisot , Mohiedine Missaoui et al.

PLoS ONE, 2013, 449, pp.804 - 804. ⟨10.1371/journal.pone.0062544.s004⟩

Article dans une revue hal-01612757v1
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Genome Sequence of "Candidatus Methanomassiliicoccus intestinalis" Issoire-Mx1, a Third Thermoplasmatales-Related Methanogenic Archaeon from Human Feces

Guillaume Borrel , Hugh Harris , Nicolas Parisot , Nadia Gaci , William Tottey et al.

Genome Announcements, 2013, 1 (4), pp.e00453-13. ⟨10.1128/genomeA.00453-13⟩

Article dans une revue pasteur-02445822v1
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Gene Capture Coupled to High-Throughput Sequencing as a Strategy for Targeted Metagenome Exploration

Jérémie Denonfoux , Nicolas Parisot , Eric Dugat-Bony , Corinne Petit , Delphine Boucher et al.

DNA Research, 2013, 20 (2), pp. 1-12. ⟨10.1093/dnares/dst001⟩

Article dans une revue hal-00783545v1
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Detecting unknown sequences with DNA microarrays: explorative probe design strategies.

Eric Dugat-Bony , Eric Peyretaillade , Nicolas Parisot , Corinne Biderre-Petit , Faouzi Jaziri et al.

Environmental Microbiology, 2012, 14 (2), pp.356-71. ⟨10.1111/j.1462-2920.2011.02559.x⟩

Article dans une revue istex hal-00822134v1

KASpOD a web service for highly specific and explorative oligonucleotide design

Nicolas Parisot , Jérémie Denonfoux , Eric Dugat-Bony , Pierre Peyret , Eric Peyretaillade

Bioinformatics, 2012, 28 (23), pp.3161-3162. ⟨10.1093/bioinformatics/bts597⟩

Article dans une revue hal-02651992v1

Annotation of microsporidian genomes using transcriptional signals.

Eric Peyretaillade , Nicolas Parisot , Valérie Polonais , Sébastien Terrat , Jérémie Denonfoux et al.

Nature Communications, 2012, 3 (1), pp.1137. ⟨10.1038/ncomms2156⟩

Article dans une revue hal-00813939v1
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Genome Sequence of "Candidatus Methanomethylophilus alvus" Mx1201, a Methanogenic Archaeon from the Human Gut Belonging to a Seventh Order of Methanogens

Guillaume Borrel , Hugh Mb Harris , William Tottey , A. Mihajlovski , Nicolas Parisot et al.

Journal of Bacteriology, 2012, 194 (24), pp.6944 - 6945. ⟨10.1128/JB.01867-12⟩

Article dans une revue hal-01612754v1

Extreme reduction and compaction of microsporidian genomes.

Eric Peyretaillade , Hicham El Alaoui , Marie Diogon , Valérie Polonais , Nicolas Parisot et al.

Research in Microbiology, 2011, 162 (6), pp.598-606. ⟨10.1016/j.resmic.2011.03.004⟩

Article dans une revue istex hal-00814808v1

Isolation of Insect as a Platform for Transcriptomic Analyses

Mélanie Ribeiro Lopes , Pierre Simonet , Gabrielle Duport , Karen Gaget , Severine Balmand et al.

RNA abundance analysis, 2170, pp.185-198, 2021, ⟨10.1007/978-1-0716-0743-5_13⟩

Chapitre d'ouvrage hal-03052268v1

Genetic Diversity of the Apoptotic Pathway in Insects

Mélanie Ribeiro Lopes , Nicolas Parisot , Patrick Callaerts , Federica Calevro

Evolution, Origin of Life, Concepts ans Methods, Springer International Publishing, pp.253-285, 2019, 978-3-030-30363-1. ⟨10.1007/978-3-030-30363-1_13⟩

Chapitre d'ouvrage hal-02304321v1

Targeted Gene Capture by Hybridization to Illuminate Ecosystem Functioning

Céline Ribière , Réjane Beugnot , Nicolas Parisot , Cyrielle Gasc , Clémence Defois et al.

Microbial Environmental Genomics (MEG), 1399, Springer New York, pp.167-182, 2016, Methods in Molecular Biology, ⟨10.1007/978-1-4939-3369-3_10⟩

Chapitre d'ouvrage hal-03772783v1

Probe design strategies for oligonucleotide microarrays

Nicolas Parisot , Eric Peyretaillade , Eric Dugat-Bony , Jérémie Denonfoux , Antoine Mahul et al.

Microarray Technology, 1368, Editions Springer, 2016, Methods in Molecular Biology, 978-1-4939-3135-4. ⟨10.1007/978-1-4939-3136-1_6⟩

Chapitre d'ouvrage hal-01273700v1

Software tools for the selection of oligonucleotide probes for microarrays.

Nicolas Parisot , Denonfoux Jérémie , Eric Dugat-Bony , Eric Peyretaillade , Pierre Peyret

Microarrays: Current technology, Innovations and Applications, Caister Academic Press, 2014

Chapitre d'ouvrage hal-03772798v1

Specific expansion and diversification of Inhibitors of APoptosis (IAPs) support symbiont maintenance and morph-specific regulation in aphids

Mélanie Ribeiro Lopes , Nicolas Parisot , Karen Gaget , Sergio Peignier , Emmanuelle Jousselin et al.

XII International Symposium on Aphids (ISA), Oct 2025, Pyeongchang, South Korea

Communication dans un congrès hal-05290694v1
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Evolution towards a two-way cooperation in a single symbiotic organ: the developmental chronicle of a multi-partner insect endosymbiosis

François Renoz , Karen Gaget , Hubert Charles , Nicolas Parisot , Patrice Baa-Puyoulet et al.

International congress of Ecology and Evolution (SFE2), Société Française d'Ecologie et d'Evolution (SFE2), Oct 2024, Lyon, France

Communication dans un congrès hal-04753005v1

Eavesdropping on the intimate dialogue between an insect and its nutritional endosymbiont along key stages of their life together

Mariana G. Ferrarini , Agnès Vallier , Nikoletta Galambos , Severine Balmand , Claudia Bellavicqua et al.

SymbNET International Conference on Host-Microbe Symbiosis, Jun 2024, Olhao - Faro, Portugal

Communication dans un congrès hal-04798309v1

Two-way cooperation in a single symbiotic organ: the developmental chronicle of a multi-partner insect endosymbiosis

François Renoz , Karen Gaget , Hubert Charles , Mélanie Ribeiro Lopes , Nicolas Parisot et al.

3rd Joint Congress on Evolutionary Biology, Jul 2024, Montreal, Canada

Communication dans un congrès hal-04753845v1

RNAseq analysis reveals new roles for conserved metazoan pathways in the regulation of bacteriocyte dynamics

Mélanie Ribeiro Lopes , Sergio Peignier , Karen Gaget , François Renoz , Patrick Callaerts et al.

14èmes rencontres du réseau français de Biologie Adaptative des Pucerons et Organismes Associés (BAPOA), Oct 2024, Montpellier, France

Communication dans un congrès hal-04783705v1

Evolutionarily conserved metazoan pathways have evolved new functions and regulate bacteriocytes' dynamics in the context of symbiosis

Mélanie Ribeiro Lopes , Nicolas Parisot , Sergio Peignier , Karen Gaget , François Renoz et al.

XXVII International Congress of Entomology, Aug 2024, Kyoto, Japan

Communication dans un congrès hal-04702864v1

A genome-wide annotation of transcription factors in the pea aphid, Acyrthosiphon pisum, and the related database, ATFdb

Nicolas Parisot , Mélanie Ribeiro Lopes , Hubert Charles , Sergio Peignier , Patrice Baa-Puyoulet et al.

13èmes rencontres du réseau français de Biologie Adaptative des Pucerons et Organismes Associés (BAPOA), Nov 2023, Villeurbanne, France

Communication dans un congrès hal-04524595v1

Acyrthosiphon pisum tissue-specific gene regulatory network inference

Sergio Peignier , Erwan Cruché , Elea Pauliat , Mélanie Ribeiro Lopes , Nicolas Parisot et al.

13èmes rencontres du réseau français de Biologie Adaptative des Pucerons et Organismes Associés (BAPOA), Nov 2023, Villeurbanne, France

Communication dans un congrès hal-04670574v1

Cellular specialization inside the symbiotic organ of an insect pest: deciphering the dialog between host and symbiotic bacteria and their adaptation to different dietetic conditions

Nikoletta Galambos , Claudia Bevilacqua , Agnès Vallier , Severine Balmand , Benjamin Gillet et al.

Microlaser Biotech, Dec 2023, Paris, France

Communication dans un congrès hal-04807017v1

Étude des peptides antimicrobiens dans la symbiose mutualiste entre le charançon des céréales Sitophilus oryzae et la bactérie endosymbiotique Sodalis pierantonius

Carole Vincent-Monégat , Galambos N. , Nicolas Parisot , Agnès Vallier , Severine Balmand et al.

Colloque du réseau "MultiFonction des Peptides AntiMicrobiens" (MuFoPAM), Oct 2023, Lille, France

Communication dans un congrès hal-04530729v1

Cellular specialization inside the symbiotic organ of an insect pest: deciphering the dialog between host and symbiotic bacteria and their adaptation to different dietetic conditions

Nikoletta Galambos , Claudia Bevilacqua , Agnès Vallier , Severine Balmand , Benjamin Gillet et al.

Microgenomics 2023, Jun 2023, Florence (IT), Italy

Communication dans un congrès hal-04798331v1

Bacteriocyte-specific Cysteine-Rich (BCR) peptides form a new aphid-specific defensin-like family and are promising regulators of aphid symbiosis

Hugo Terrasson , Karine Loth , Nicolas Parisot , Françoise Paquet , Isabelle Rahioui et al.

Rencontres du Réseau Ecologie des Interactions Durables (REID), May 2023, Poitiers, France

Communication dans un congrès hal-04633283v1

Réseaux de régulation géniques : Méthodes d'inférence et questions biologiques dans le modèle puceron

Federica Calevro , Nicolas Parisot , Sergio Peignier

Première rencontre SPE et Numérique, INRAE département SPE, May 2022, Lyon, France

Communication dans un congrès hal-04783124v1

Utilisation de méthodes d'apprentissage automatique pour la reconstruction et modélisation de réseaux géniques développementaux chez les bactériocytes d'insectes

Sergio Peignier , Nicolas Parisot , Federica Calevro

1er séminaire Métaprogramme DIGIT-BIO, Dec 2022, Ecully, France

Communication dans un congrès hal-04889858v1

Les peptides « Bacteriocyte-specific Cystein-Rich » : une nouvelle famille de défensine. Régulateurs de la symbiose chez les pucerons ?

Hugo Terrasson , Karine Loth , Nicolas Parisot , Françoise Paquet , Isabelle Rahioui et al.

9ème Journées du GDR "MultiFonction des Peptides AntiMicrobiens" (MuFoPAM), Oct 2022, Amboise, France

Communication dans un congrès hal-04633233v1

Peptides « Bacteriocyte-specific Cysteine Rich » (BCR) : un rôle dans le contrôle de la symbiose ? Focus sur BCR4 chez le puceron du pois.

Hugo Terrasson , Karine Loth , Nicolas Parisot , Françoise Paquet , Isabelle Rahioui et al.

12èmes rencontres du réseau français de Biologie Adaptative des Pucerons et Organismes Associés (BAPOA), May 2022, Nice, France

Communication dans un congrès hal-04771966v1

Bacteriocyte differentiation and cell death in the aphid/Buchnera symbiotic system

Mélanie Ribeiro Lopes , Nicolas Parisot , Patrick Callaerts , Federica Calevro

XXVI International Congress of Entomology, Jul 2022, Helsinki, Finland

Communication dans un congrès hal-04670590v1

Transposable element regulation in the cereal weevil Sitophilus oryzae and its potential association with an endosymbiotic bacteria

Elisa Dell’aglio , Clément Goubert , Mariana G. Ferrarini , Agnès Vallier , Caroline Blanc et al.

CNET (23d congrès national des éléments transposables), Jul 2022, Paris, France

Communication dans un congrès hal-04783612v1

Unravelling the molecular bases of host-endosymbiont interactions at critical developmental stages of a cereal weevil

Mariana G. Ferrarini , Agnès Vallier , Elisa Dell’aglio , Carole Vincent-Monégat , Sandrine Hughes et al.

10th congress of the International Symbiosis Society (ISS) - 3rd International Conference on Holobionts (joint meeting), Jul 2022, Lyon, France

Communication dans un congrès hal-04771926v1

La face cachée des LncRNAs d’Acyrthosiphon pisum

Marion Cardinaud , Nicolas Parisot , Antonin Schmitz , Joris Villalba , Marie-Gabrielle Duport et al.

12ème Rencontre du Réseau Français de Biologie Adaptative des Pucerons et Organismes Associés - BAPOA, May 2022, Nice, France

Communication dans un congrès hal-04783582v1

The assembly of the rice weevil Sitophilus oryzae is dominated by transposable elements and shades light on the evolution of endosymbiosis in a major crop pest.

Nicolas Parisot , Carlos Vargas-Chávez , Clément Goubert , Patrice Baa-Puyoulet , Severine Balmand et al.

Arthropod Genomics Symposium 2022, Jun 2022, Notre Dame, United States

Communication dans un congrès hal-04783673v1

Décrypter le dialogue moléculaire hôte-symbiote pour l’étude systémique des interactions symbiotiques chez les insectes d’intérêt agronomique

Nicolas Parisot , Jonathan Rouzaud-Cornabas

Journée de l'Enjeu Santé Globale et Bioingénierie de l'INSA Lyon, Nov 2021, Villeurbanne, France

Communication dans un congrès hal-04784485v1

Immune functions and developmental processes promoting endosymbiosis maintenance in the cereal weevil Sitophilus spp.

Abdelaziz Heddi , Nicolas Parisot

Journées du réseau Etudes Fonctionnelles chez les ORganismes modèles - EFOR, May 2021, Virtual, France

Communication dans un congrès hal-04783524v1

The Inhibitor of APoptosis (IAP) gene family in aphids: between expansion and functional diversification

Mélanie Ribeiro Lopes , Nicolas Parisot , Sergio Peignier , Karen Gaget , Marie-Gabrielle Duport et al.

Webinaire du réseau français de Biologie Adaptative des Pucerons et Organismes Associés (BAPOA), 2021, Villeurbanne (virtual), France

Communication dans un congrès hal-03514209v1

Unraveling the molecular bases of the host-symbiont interactions at critical symbiotic stages

Mariana G. Ferrarini , Agnès Vallier , Elisa Dell’aglio , Carole Vincent-Monégat , Sandrine Hughes et al.

Webinaires du Groupe Régional de Recherche en Microbiologie des Interactions (G-RREMI) 2021, Jun 2021, Lyon, France

Communication dans un congrès hal-04771798v1

Analysis of the inhibitor of aPoptosis (IAP) repertoire in insects reveals a complex pattern of gene losses and amplifications

Mélanie Ribeiro Lopes , Jousselin Emmanuelle , Patrice Baa-Puyoulet , C. Huygens , Karen Gaget et al.

Incontri di diversità delle forme e degli animali, Università di Pisa, 2021, Pisa, Italy

Communication dans un congrès hal-03514196v1

Unraveling the molecular bases of the host-symbiont interactions at critical symbiotic stages

Mariana G. Ferrarini , Agnès Vallier , Elisa Dell’aglio , Carole Vincent-Monégat , Sandrine Hughes et al.

Molecular mechanisms of interspecies interactions, Dec 2021, Virtual conference, Chile

Communication dans un congrès hal-04792785v1

Setting up a Dual-RNAseq approach to unravel the modulation of symbiotic structures during the metamorphosis of the cereal weevil Sitophilus oryzae.

Mariana G. Ferrarini , Nicolas Parisot , Justin Maire , Agnès Vallier , Benjamin Gillet et al.

Insects: Immunity and Infection, Royal Entomology Society, Sep 2020, Virtual, France

Communication dans un congrès hal-04806873v1

PGRP-LB, acteur majeur du maintien et du contrôle de l’endosymbiose chez le charançon des céréales.

Julien Orlans , Carole Vincent-Monégat , Agnès Vallier , Isabelle Rahioui , Catherine Sivignon et al.

Colloque Réseau Ecologie des Interactions Durables (REID) et le réseau Immunologie des Invertébrés (IMMUNINV), May 2019, Montpellier, France

Communication dans un congrès hal-04784679v1

Development of a Dual-RNAseq strategy to unravel the molecular bases of host-symbiont interactions

Mariana G. Ferrarini , Nicolas Parisot , Agnès Vallier , Justin Maire , Benjamin Gillet et al.

Colloque Réseau Ecologie des Interactions Durables (REID) et le réseau Immunologie des Invertébrés (IMMUNINV), May 2019, Montpellier, France

Communication dans un congrès hal-04784637v1

Extreme makeover: Symbiosis remodeling and endosymbiont relocalization during host metamorphosis in the cereal weevil Sitophilus

Justin Maire , Nicolas Parisot , Mariana G. Ferrarini , Agnès Vallier , Benjamin Gillet et al.

2nd Microbial Ecology & Environmental Microbiology Meeting - MEEM, May 2019, Melbourne (AUS), Australia

Communication dans un congrès hal-04784732v1

Study of insect-bacteria symbiotic interactions by dual RNAseq

Natacha Kremer , Mariana G. Ferrarini , Hélène Henri , Sandrine Hughes , Benjamin Gillet et al.

Journée Transcriptomique Complexe des GDR GE et BIM, Dec 2019, Nancy, France

Communication dans un congrès hal-04784601v1

IAP (Inhibitor-of-Apoptosis Protein) gene family expansion and functional diversification in aphids

Mélanie Ribeiro Lopes , Nicolas Parisot , Karen Gaget , Marie-Gabrielle Duport , Korneel Hens et al.

2nd UK-France Joint meeting on Aphids - Royal Entomologial Society, Apr 2019, Rothamsted, United Kingdom

Communication dans un congrès hal-03512999v1

IAP (Inhibitor-of-Apoptosis Protein) gene family expansion and functional characterization in aphids

Mélanie Ribeiro Lopes , Nicolas Parisot , Karen Gaget , Marie-Gabrielle Duport , Korneel Hens et al.

8th International Symposium on Molecular Insect Science, Jul 2019, Sitges, Spain

Communication dans un congrès hal-03741297v1

Bacteriocyte reprogramming to cope with nutritional stress in a phloem sap feeding hemipteran, the pea aphid Acyrthosiphon pisum

Nicolas Parisot , Stefano Colella , Mélanie Ribeiro Lopes , Karen Gaget , Marie-Gabrielle Duport et al.

INSA Lyon International Partner Days, Oct 2018, Villeurbanne, France

Communication dans un congrès hal-03514034v1

Expansion of genes encoding Apoptosis Inhibitor Proteins (IAPs) and their role in a novel bacteriocyte cell death process in aphid symbiosis

Mélanie Ribeiro Lopes , Nicolas Parisot , Karen Gaget , Pierre Simonet , Severine Balmand et al.

22. Evolutionary Biology Meeting, Sep 2018, Marseille, France

Communication dans un congrès hal-03509938v1

Rôle clé du bactériocyte dans la résilience du puceron aux stress nutritionnels

Federica Calevro , Nicolas Parisot , Mélanie Ribeiro Lopes , Stefano Colella , Karen Gaget et al.

11ème Réunion du Réseau Français de Biologie Adaptative des Pucerons et Organismes Associés (BAPOA), Nov 2018, Rennes, France

Communication dans un congrès hal-03514026v1

A novel cell death process is involved in the elimination of bacteriocytes and their symbionts through aphid aging

Mélanie Ribeiro Lopes , Pierre Simonet , Karen Gaget , Severine Balmand , Nicolas Parisot et al.

France-Israel PRC Meeting – The role of metabolic interactions in shaping the bacterial endosymbiotic community of Hemyptera, Nov 2018, Villeurbanne, France

Communication dans un congrès hal-03514078v1

Another way to die for bacteriocytes in the aphid/Buchnera symbiotic system

Mélanie Ribeiro Lopes , Pierre Simonet , Karen Gaget , Severine Balmand , Kurt Buhler et al.

Journée des doctorants du département SPE, Jun 2018, Nice, France

Communication dans un congrès hal-03510629v1

Bacteriocyte reprogramming to cope with nutritional stress in a phloem sap feeding hemipteran, the pea aphid Acyrthosiphon pisum

Nicolas Parisot , Mélanie Ribeiro Lopes , Karen Gaget , Marie-Gabrielle Duport , Patrice Baa-Puyoulet et al.

France-Israel PRC Meeting – The role of metabolic interactions in shaping the bacterial endosymbiotic community of Hemyptera, Nov 2018, Villeurbanne, France

Communication dans un congrès hal-03514051v1

Amplification des gènes codant les protéines de la famille des IAP et leur rôle dans l'homéostasie bactériocytaire

Mélanie Ribeiro Lopes , Nicolas Parisot , Karen Gaget , Marie-Gabrielle Duport , Korneel Hens et al.

11èmes rencontres du réseau de Biologie Adaptative des Pucerons et Organismes Associés (BAPOA), Nov 2018, Rennes, France

Communication dans un congrès hal-03741308v1

Life history traits and tissue-specific gene expression changes underlying the symbiotic pea aphid resilience to a tyrosine and phenylalanine depleted diet

Nicolas Parisot , Pierre Simonet , Karen Gaget , Marie-Gabrielle Duport , Patrice Baa-Puyoulet et al.

9. Réunion du Réseau Français de Biologie Adaptative des Pucerons et Organismes Associés (BAPOA), Nov 2016, Amiens, France

Communication dans un congrès hal-03506796v1

Une nouvelle forme de mort cellulaire impliquée dans la dégénérescence des cellules bactériocytaires chez le puceron du pois, Acyrthosiphon pisum

Pierre Simonet , Severine Balmand , Karen Gaget , Marie-Gabrielle Duport , Nicolas Parisot et al.

18. Colloque Biologie de l'Insecte, Jun 2016, Tours, France

Communication dans un congrès hal-03506790v1

The long-term relationship with Buchnera aphidicola imposes another way to die for Acyrthosiphon pisum bacteriocytes

Pierre Simonet , Severine Balmand , Karen Gaget , Karine Buhler , Nicolas Parisot et al.

9. Réunion annuelle du Réseau BAPOA (Biologie Adaptative des Pucerons et Organismes Associés), Nov 2016, Amiens, France

Communication dans un congrès hal-03506794v1
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From SymbAphidBase to SymbAphidCyc: two companion databases to study and compare aphid symbionts from genomes to metabolic pathways

Patrice Baa-Puyoulet , Mathieu Labernardiere , Nicolas Parisot , Jean-Pierre Gauthier , Gérard Febvay et al.

JOBIM 2015 - Journées Ouvertes Biologie Informatique Mathématiques, Université d'Auvergne - Clermont-Ferrand I (UdA). FRA., Jul 2015, Clermont-Ferrand, France. 1 p

Communication dans un congrès hal-01208786v1

Propositional Logic for Efficient Microbial Community Assessment by DNA Microarray Data Analysis

F. Jaziri , C. Ribiere , C. Gasc , N. Parisot , C. Defois et al.

JOBIM, 2015, Clermont-Fd, France. pp.1-9

Communication dans un congrès hal-02077182v1

Fungal secondary metabolites from Monascus spp. reduce methane production by affecting rumen methanogenic Archaea diversity in wethers

Milka Popova , Nicolas Parisot , Céline Ribière , Jérémie Denonfoux , Eric Dugat-Bony et al.

Greenhouse Gases and Animal Agriculture Conference, 2013, Dublin, Ireland

Communication dans un congrès hal-02746467v1

MetaExploArrays: a large-scale oligonucleotide probe design software for explorative DNA microarrays

Faouzi Jaziri , David R.C. Hill , Nicolas Parisot , Jeremie Denonfoux , Eric Dugat-Bony et al.

13. International Conference on Parallel and Distributed Computing, Applications and Technologies, Dec 2012, Bejing, China. ⟨10.1109/PDCAT.2012.94⟩

Communication dans un congrès hal-01393662v1
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Détermination de sondes oligonucléotidiques pour biopuces phylogénétiques en environnement grille de calcul

Faouzi Jaziri , Sébastien Cipière , Mohieddine Missaoui , Denonfoux Jérémie , Eric Dugat-Bony et al.

Rencontres Scientifiques France Grilles 2011, Sep 2011, Lyon, France

Communication dans un congrès hal-00658712v1

Annotation et évolution des familles de transporteurs chez le puceron du pois (Acyrthosiphon pisum)

Nicolas Parisot , Karen Gaget , Stefano Colella , Andréane Rabatel , Federica Calevro et al.

3. Réunion Réseau Français de Biologie Adaptative des Pucerons, Institut National de Recherche Agronomique (INRA). UMR Biologie Fonctionnelle, Insectes et Interactions (0203)., Oct 2010, Lyon, France. n. p

Communication dans un congrès hal-02818835v1

Genomic analysis of the transport function in the symbiotic system of the pea aphid Acyrthosiphon pisum

Yvan Rahbé , Nicolas Parisot , Karen Gaget , Stefano Colella , Andréane Rabatel et al.

5. Meeting GDRE-RA "Comparative genomics", Institut d'Estudis Catalans (IEC). Barcelona, ESP., Nov 2010, Barcelone, Spain. n. p

Communication dans un congrès hal-02823073v1

Origin and evolution of Inhibitors of apoptosis (IAPs) in early metazoans

Mélanie Ribeiro Lopes , Nicolas Parisot , Sergio Peignier , François Renoz , Patrice Baa-Puyoulet et al.

EVOLYON 2025, Nov 2025, Villeurbanne, France

Poster de conférence hal-05290683v1

How advanced microscopy tools are uncovering unexpected ways of exchanging nutrients in insect symbiosis

Severine Balmand , Camille Rivard , Sergio Peignier , Rachel Santarella-Mellwig , Meriem Ghanem-Debbache et al.

Groupe régional de recherche en microbiologie des interactions (G-RREMI), Nov 2025, Lyon, France

Poster de conférence hal-05419490v1

Exploring the genomic basis underlying the diversity of host-endosymbiont interactions in Sitophilus spp. weevils

J Uxue Mendez Leyva , Agnès Vallier , Benjamin Gillet , Sandrine Hughes , Carole Vincent-Monégat et al.

ALPHY - AIEM, Feb 2025, Lyon, France

Poster de conférence hal-04940843v1

Origin and evolution of Inhibitors of apoptosis (IAP) in early metazoans

Mélanie Ribeiro Lopes , Nicolas Parisot , Sergio Peignier , François Renoz , Patrice Baa-Puyoulet et al.

Jacque Monod conference, Molecular basis for membrane remodelling and organisation, Jun 2025, Roscoff, France

Poster de conférence hal-05137897v1

Efficient compartmentalization in insect bacteriomes protects symbiotic bacteria from host immune system

Carole Vincent-Monégat , Mariana G. Ferrarini , Elisa Dell’aglio , Agnès Vallier , Severine Balmand et al.

8th International Symposium on Antimicrobial Peptides, Jun 2024, Marseille (13), France

Poster de conférence hal-04771905v1

The aphid BCR4 structure and activity uncover a new defensin peptide superfamily

Hugo Terrasson , Karine Loth , Nicolas Parisot , Françoise Paquet , Isabelle Rahioui et al.

XXVII International Congress of Entomology, Aug 2024, Kyoto, Japan

Poster de conférence hal-04702878v1

How advanced microscopy tools are uncovering unexpected ways of exchanging nutrients in insect symbiosis

Severine Balmand , Camille Rivard , Sergio Peignier , Rachel Santarella-Mellwig , Meriem Ghanem-Debbache et al.

13èmes Journées Scientifiques et Techniques du Réseau des Microscopistes INRAE, Nov 2024, Villenave d'Ornon, France

Poster de conférence hal-04810099v1

Intracellular endosymbionts impact DNA methylation in Sitophilus oryzae

J Uxue Mendez Leyva , Agnès Vallier , Mariana Galvão Ferrarini , Nicolas Parisot , Abdelaziz Heddi et al.

SymbNET International Conference on Host-Microbe Symbiosis, Jun 2024, Olhão, Portugal

Poster de conférence hal-04733153v1

Aphid defense strategies, symbiotic dynamics and the role of transposable elements in parasitoid interactions

Mariane Possignolo Gomes , Fernando Luis Cônsoli , Nicolas Parisot , Tobias Baril , Clément Goubert et al.

International congress of transposable elements, Apr 2024, Saint Malo, France

Poster de conférence hal-04790787v1

Genome assembly of the cereal aphid Sipha maydis, a model for the study of dual endosymbiosis in insects

François Renoz , Nicolas Parisot , Patrice Baa-Puyoulet , Léo Gerlin , Samir Fakhour et al.

13e Rencontre du Réseau Français de Biologie Adaptative des Pucerons et Organismes Associés (BAPOA), Nov 2023, Villeurbanne, France

Poster de conférence hal-04524568v1

Cellular specialization inside the symbiotic organ of an insect pest: deciphering the dialog between host and symbiotic bacteria and their adaptation to different dietetic conditions

Nikoletta Galambos , Claudia Bevilacqua , Agnès Vallier , Severine Balmand , Benjamin Gillet et al.

Groupe Régional de Recherche en Microbiologie des Interactions (G-RREMI), Nov 2023, Lyon, France

Poster de conférence hal-04807966v1

The Bacteriocyte-specific Cysteine-Rich (BCR) proteins: a role in the control of aphid symbiosis ?

Hugo Terrasson , Karine Loth , Françoise Paquet , Nicolas Parisot , Isabelle Rahioui et al.

Journée scientifique enjeu « santé globale et bio‐ingénierie » de l'INSA Lyon, Apr 2023, Villeurbanne, France

Poster de conférence hal-04633269v1

Deciphering bacteriocyte differentiation by laser-capture microdissection and dual RNA-sequencing in Sitophilus oryzae / Sodalis pierantonius

Nikoletta Galambos , Justin Maire , Claudia Bevilacqua , Severine Balmand , Agnès Vallier et al.

10th congress of the International Symbiosis Society (ISS) - 3rd International Conference on Holobionts (joint meeting), Jul 2022, Lyon, France

Poster de conférence hal-04788603v1

High-throughput genomics and transcriptomics to decipher host-symbiont molecular dialogue in the cereal weevil Sitophilus oryzae and Sodalis pierantonius endosymbiotic association

Nicolas Parisot , Mariana Galvão Ferrarini , Clément Goubert , Carlos Vargas-Chávez , Agnès Vallier et al.

10th congress of the International Symbiosis Society (ISS) - 3rd International Conference on Holobionts (joint meeting), Jul 2022, Lyon, France

Poster de conférence hal-03810657v1

From genomes to metabolism reconstruction: companion collections of databases to study symbiotic interactions between insects and their bacterial symbionts.

Patrice Baa-Puyoulet , Nicolas Parisot , Sergio Peignier , Federica Calevro , Hubert Charles

12èmes rencontres du réseau français de Biologie Adaptative des Pucerons et Organismes Associés (BAPOA), May 2022, Nice, France

Poster de conférence hal-03810352v1

ER stress as a major regulator of aphid bacteriocyte cell death

Karen Gaget , Mélanie Ribeiro Lopes , Marie-Gabrielle Duport , Patrick Callaerts , Nicolas Parisot et al.

12èmes rencontres du réseau français de Biologie Adaptative des Pucerons et Organismes Associés (BAPOA), May 2022, Nice, France

Poster de conférence hal-03741344v1

Small RNAs as cross-kingdom communication agents in the cereal pest Sitophilus oryzae

Mariana G. Ferrarini , Elisa Dell’aglio , Agnès Vallier , Luis Alfonso Arteaga-Figueroa , Nicolas Parisot et al.

10th congress of the International Symbiosis Society (ISS) - 3rd International Conference on Holobionts (joint meeting), Jul 2022, Lyon, France. 2022

Poster de conférence hal-04783615v1

Cellular specialization inside the symbiotic organ of an insect pest: deciphering the dialog between host and symbiotic bacteria and their adaptation to different dietetic conditions

Nikoletta Galambos , Justin Maire , Claudia Bevilacqua , Severine Balmand , Agnès Vallier et al.

Rencontres du Groupe Régional de Recherche en Microbiologie des Interactions (G-RREMI) 2022, Nov 2022, Lyon, France

Poster de conférence hal-04788646v1

Efficient compartmentalization in insect bacteriomes protects symbiotic bacteria from host immune system

Mariana G. Ferrarini , Elisa Dell’aglio , Agnès Vallier , Severine Balmand , Carole Vincent-Monégat et al.

10th congress of the International Symbiosis Society (ISS) - 3rd International Conference on Holobionts (joint meeting), Jul 2022, Lyon, France

Poster de conférence hal-04783698v1

Bacteriocytes and the interorgan communication network regulating physiology and metabolism of the pea aphid

Cissy Huygens , Mélanie Ribeiro Lopes , Karen Gaget , Marie-Gabrielle Duport , Sergio Peignier et al.

10th congress of the International Symbiosis Society (ISS) - 3rd International Conference on Holobionts (joint meeting), Jul 2022, Lyon, France

Poster de conférence hal-03741324v1

Bacteriocyte specific Cystein Rich peptides, a new defensin like protein family , are promising regulators of aphid symbiosis

Hugo Terrasson , Karine Loth , Nicolas Parisot , Françoise Paquet , Isabelle Rahioui et al.

10th congress of the International Symbiosis Society (ISS) - 3rd International Conference on Holobionts (joint meeting), Jul 2022, Lyon, France

Poster de conférence hal-04771990v1

From genomes to metabolism reconstruction: companion collections of databases to study symbiotic interactions between insects and their bacterial symbionts

Patrice Baa-Puyoulet , Nicolas Parisot , Sergio Peignier , Federica Calevro , Hubert Charles

10th congress of the International Symbiosis Society (ISS) - 3rd International Conference on Holobionts (joint meeting), Jul 2022, Lyon, France

Poster de conférence hal-04784498v1

Unraveling the molecular bases of the host-symbiont interactions at critical symbiotic stages

Mariana G. Ferrarini , Agnès Vallier , Elisa Dell’aglio , Carole Vincent-Monégat , Sandrine Hughes et al.

The Rise and Fall of Mutualisms, Oct 2021, Meinz, Germany

Poster de conférence hal-04744865v1

Transposable element dynamics in the host-bacteria association of the cereal weevil Sitophilus oryzae

Mariana G. Ferrarini , Clément Goubert , Nicolas Parisot , Carlos Vargas-Chávez , Agnès Vallier et al.

Mobile DNA 2021, Jun 2021, Virtual, France

Poster de conférence hal-04790867v1

From genomes to metabolism reconstruction: companion collections of databases to study symbiotic interactions between insects and their bacterial symbionts

Patrice Baa-Puyoulet , Nicolas Parisot , Sergio Peignier , Federica Calevro , Hubert Charles

13. Réunion du Réseau Français de Biologie Adaptative des Pucerons et Organismes Associés (BAPOA), 2020, Nice (virtuel), France

Poster de conférence hal-03514174v1

A novel cell death process eliminates both bacteriocytes and their symbionts in the pea aphid/Buchnera symbiotic system

Mélanie Ribeiro Lopes , Pierre Simonet , Karen Gaget , Severine Balmand , Nicolas Parisot et al.

2nd UK-France Joint meeting on Aphids - Royal Entomological Society, Apr 2019, Rothamsted, United Kingdom

Poster de conférence hal-03513018v1

4IN: an interactive database for insect innate immunity

Carole Vincent-Monégat , Nicolas Parisot , Carlos Vargas-Chávez , Louis Beranger , Aymeric Bonnamour et al.

Colloque Réseau Ecologie des Interactions Durables (REID) et le réseau Immunologie des Invertébrés (IMMUNINV), May 2019, Montpellier, France

Poster de conférence hal-04784931v1

4IN: an interactive database for insect innate immunity

Carole Vincent-Monégat , Nicolas Parisot , Carlos Vargas-Chávez , Louis Beranger , Aymeric Bonnamour et al.

Auvergne Rhône-Alpes Regional Workshop on Microbiome, Nov 2019, Villeurbanne, France

Poster de conférence hal-04784972v1

Intracellular bacterial symbiosis in a non-conventional insect: the challenges of imaging subcellular functional organization & bacterial-host co-development

Justin Maire , Severine Balmand , Nicolas Parisot , Agnès Vallier , Mariana G. Ferrarini et al.

10th Imaging the cell meeting, Nov 2019, Lyon, France

Poster de conférence hal-04785062v1

Development of a dual RNA-seq strategy to unravel the molecular bases of host-symbiont interactions

Nicolas Parisot , Agnès Vallier , Justin Maire , Mariana G. Ferrarini , Benjamin Gillet et al.

Journée scientifique de la FR BioEnviS, Jan 2019, Villeurbanne, France

Poster de conférence hal-04804142v1

Transposable element dynamics in Sitophilus oryzae

Clément Goubert , Mariana G. Ferrarini , Agnès Vallier , Nicolas Parisot , Matthieu Boulesteix et al.

Auvergne Rhône-Alpes Regional Workshop on Microbiome, Nov 2019, Villeurbanne, France

Poster de conférence hal-04785024v1

Transposable element dynamics and regulation in a major crop pest: Sitophilus oryzae.

Caroline Blanc , Théo Chancy , Agnès Vallier , Severine Balmand , Clément Goubert et al.

Congrès national sur les éléments transposables, Jul 2019, Lyon, France

Poster de conférence hal-04790834v1

Bacteriocyte reprogramming to maintain organismal homeostasis under nutritional stress in aphid symbiosis

Nicolas Parisot , Stefano Colella , Pierre Simonet , Karen Gaget , Marie-Gabrielle Duport et al.

2nd UK-France Joint meeting on Aphids - Royal Entomological Society, Apr 2019, Rothamsted, United Kingdom

Poster de conférence hal-03513048v1

Development of a dual RNA-seq strategy to unravel the molecular bases of host-symbiont interactions

Nicolas Parisot , Agnès Vallier , Justin Maire , Mariana G. Ferrarini , Benjamin Gillet et al.

Auvergne Rhône-Alpes Regional Workshop on Microbiome, Nov 2019, Villeurbanne, France

Poster de conférence hal-04785000v1

A novel cell death process eliminates both bacteriocytes and their symbionts in the pea aphid/Buchnera symbiotic system

Karen Gaget , Severine Balmand , Kurt Buhler , Patrick Callaerts , Nicolas Parisot et al.

INSA Lyon International Partner Days, Oct 2018, Villeurbanne (INSA-Lyon), France

Poster de conférence hal-03514067v1

Molecular characterization of aphid bacteriocyte cell death by RNAseq analysis

Mélanie Ribeiro Lopes , Nicolas Parisot , Karen Gaget , Patrick Callaerts , Federica Calevro

11th European Congress of Entomology, Jul 2018, Naples, Italy

Poster de conférence hal-03741337v1

A novel cell death process eliminates both bacteriocytes and their symbionts in the pea aphid/Buchnera symbiotic system

Mélanie Ribeiro Lopes , Pierre Simonet , Karen Gaget , Severine Balmand , Nicolas Parisot et al.

11. European Congress of Entomology, Jul 2018, Naples, Italy

Poster de conférence hal-03509913v1

Molecular characterization of aphid bacteriocyte cell death by RNAseq analysis

Nicolas Parisot , Stefano Colella , Mélanie Ribeiro Lopes , Karen Gaget , Marie-Gabrielle Duport et al.

INSA Lyon International Partner Days, Oct 2018, Lyon, France

Poster de conférence hal-03741347v1

Evaluating the essentiality of the primary endosymbiont of the rice weevil Sitophilus oryzae through genome analysis

Carlos Vargas-Chavez , Nicolas Parisot , C. Goubert , Patrice Baa-Puyoulet , Severine Balmand et al.

6. Meeting of the Spanish Society for Evolutionary Biology (SESBE), Jan 2018, Palma of Mallorca, Balearic Islands, Spain

Poster de conférence hal-03514015v1

Bacteriocyte reprogramming to maintain organismal homeostasis under nutritional stress in aphid symbiosis

Nicolas Parisot , Stefano Colella , Pierre Simonet , Karen Gaget , Marie-Gabrielle Duport et al.

XIth European Congress of Entomology, Jul 2018, Naples, Italy

Poster de conférence hal-03509885v1

The draft genome sequence of the rice weevil Sitophilus oryzae as a model to explore the host-symbiont interactions in a nascent stage of endosymbiosis

Carlos Vargas-Chavez , Nicolas Parisot , Clément Goubert , Patrice Baa-Puyoulet , Severine Balmand et al.

Journées Ouvertes Biologie Informatique Mathématiques (JOBIM), Jun 2016, Lyon, France

Poster de conférence hal-03506786v1

Analyse génomique de la fonction de transport dans le système symbiotique du puceron du pois Acyrthosiphon pisum

Nicolas Parisot , Karen Gaget , Stefano Colella , Andréane Rabatel , Federica Calevro et al.

16. Colloque de Biologie de l’Insecte, Oct 2010, Lyon, France. , 126 p., 2010, CBI-2010 : 16ème Colloque de Biologie de l’Insecte, Lyon, 18 au 20 octobre 2010

Poster de conférence hal-02755294v1

Bacterial Tubular Networks Channel Carbohydrates in Insect Endosymbiosis

Séverine Balmand , Camille Rivard , Sergio Peignier , Rachel Santarella-Mellwig , Meriem Ghanem-Debbache et al.

2024

Pré-publication, Document de travail hal-04792721v1
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Comprehensive annotation of transcription factors, chromatin-associated factors, and basal transcription machinery in the pea aphid, Acyrthosiphon pisum

Nicolas Parisot , Mélanie Ribeiro Lopes , Sergio Peignier , Patrice Baa-Puyoulet , Hubert Charles et al.

2024

Pré-publication, Document de travail hal-04792881v1
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High-throughput Tn-seq screens identify both known and novel<i>Pseudomonas putida</i>KT2440 genes involved in metal resistance

Kevin Royet , Laura Kergoat , Stefanie Lutz , Charlotte Oriol , Nicolas Parisot et al.

2024

Pré-publication, Document de travail hal-04791915v1
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Transcriptional survey of ovarian bacteriomes in the cereal weevil,<i>Sitophilus oryzae</i>, shows down-regulation of immune effectors at the onset of sexual maturity

Mariana Galvão Ferrarini , Agnès Vallier , Elisa Dell’aglio , Séverine Balmand , Carole Vincent-Monégat et al.

2024

Pré-publication, Document de travail hal-04791940v1
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Cereal Weevil’s Antimicrobial Peptides: At the Crosstalk between Development, Endosymbiosis and Immune Response

N. Galambos , Carole Vincent-Monégat , Agnès Vallier , Nicolas Parisot , Abdelaziz Heddi et al.

2024

Pré-publication, Document de travail hal-04791881v1
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Coordination of host and endosymbiont gene expression governs endosymbiont growth and elimination in the cereal weevil<i>Sitophilus</i>spp

Mariana Galvão Ferrarini , Agnès Vallier , Carole Vincent-Monégat , Elisa Dell’aglio , Benjamin Gillet et al.

2024

Pré-publication, Document de travail hal-04791892v1
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Efficient compartmentalization in insect bacteriomes protects symbiotic bacteria from host immune system

Mariana Galvão Ferrarini , Elisa Dell’aglio , Agnès Vallier , Séverine Balmand , Carole Vincent-Monégat et al.

2024

Pré-publication, Document de travail hal-04792685v1

The transposable element-rich genome of the cereal pest Sitophilus oryzae

Nicolas Parisot , Carlos Vargas-Chavez , Clément Goubert , Patrice Baa-Puyoulet , Séverine Balmand et al.

2024

Pré-publication, Document de travail hal-04706472v1
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Genome Wide Identification Of Bacterial Genes Required For Plant Infection By Tn-Seq

Kévin Royet , Nicolas Parisot , Agnès Rodrigue , Erwan Gueguen , Guy Condemine

2019

Pré-publication, Document de travail hal-01991141v1

Molecular evolutionary trends and feeding ecology diversification in the Hemiptera, anchored by the milkweed bug genome

Kristen Panfilio , Iris Jentzsch , Joshua Benoit , Deniz Erezyilmaz , Yuichiro Suzuki et al.

2020

Pré-publication, Document de travail hal-02936178v1