Olivier Langella

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Proteograph, typst package for proteomics data visualization directly from JSON

Olivier Langella

EuBIC-MS Winter School 2026, Jan 2026, Harrachov, Czech Republic

Poster de conférence hal-05451903v1
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Identifying Single Amino Acid Variant with SpecOMS an OpenModification Search engine

Olivier Langella , Rémy Séraphin , Luciana de Oliveira , Melisande Blein-Nicolas

EUPA 2025, Jun 2025, Saint Malo (FR), France

Poster de conférence hal-05108269v1
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MCQR: Enhancing the processing and analysis of quantitative proteomics data by incorporating chromatography and mass spectrometry information

Thierry Balliau , Anne Aubert-Frambourg , Olivier Langella , Martin-Magniette Marie-Laure , Michel Zivy et al.

EUPA 2025 saint-Malo, Jun 2025, Saint Malo (FR), France

Poster de conférence hal-05113649v1
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PROTEOBENCH, An open platform for comparing proteomics data analysis workflows

Robbe Devreese , Caroline Jachmann , Bart van Puyvelde , Holda A Anagho-Mattanovich , Witold E Wolski et al.

HUPO 2025, Nov 2025, Toronto, Canada

Poster de conférence hal-05357004v1
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Large scale plant protein turnover measurement

Willy Vincent Bienvenut , Marie-Hélène Andrieu , Olivier Langella , Thierry Balliau , Sophie Colombie et al.

Annual ASMS conference, Jun 2024, Anaheim (CA), United States

Poster de conférence hal-04590280v1
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i2MassChroQ : full native timsTOF PASEF-enabled quantitative proteomics

Olivier Langella , Thierry Balliau , Marlène Davanture , Mélisande Blein-Nicolas , Filippo Rusconi

EuBIC-MS Winter School 2024, Jan 2024, Winterberg, Germany

Poster de conférence hal-04321638v1
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Merging SpecOMS and X!Tandem identification results using machine learning algorithm in i2MassChroQ

Olivier Langella , Thierry Balliau , Marlène Davanture , Filippo Rusconi , Melisande Blein-Nicolas et al.

ProteoAix 2023 the 3rd Joint Meeting of Spanish, French, and Portuguese Proteomics Societies, Jun 2023, Aix en Provence, France

Poster de conférence hal-04103233v1
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X!TandemPipeline++: Software for Ion Mobility-Enabled Quantitative Proteomics in timsTOF Data Format

Olivier Langella , Thomas Renne , Thierry Balliau , Marlène Davanture , Sven Brehmer et al.

70th ASMS Conference on Mass Spectrometry and Allied Topics ( ASMS 2022 ), Jun 2022, Minneapolis, United States.

Poster de conférence hal-03687564v1
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Open Modification Search using SpecOMS and i2MassChroQ

Olivier Langella , Luciana de Oliveira , Michel Zivy , Melisande Blein-Nicolas , Dominique Tessier

analytics 2022, Sep 2022, Nantes, France

Poster de conférence hal-03735820v1
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Upgrading X!TandemPipeline and MassChroQ for fast and accurate timsTOF native raw data support for quantitative proteomics

Olivier Langella , Thomas Renne , Thierry Balliau , Marlène Davanture , Sven Brehmer et al.

ProteoVilamoura 2022, May 2022, Vilamoura, Portugal

Poster de conférence hal-03687443v1
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i2MassChroQ: Software for Ion Mobility-Enabled Quantitative Proteomics in timsTOF Data Format

Olivier Langella , Thomas Renne , Thierry Balliau , Marlène Davanture , Sven Brehmer et al.

Analytics 2022, Sep 2022, Nantes, France

Poster de conférence hal-03776788v1
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Sub optimal 15N metabolic labelling in plant: A new way to perform large scale protein turnovers determination using the peptides isotopic distribution

Willy Vincent Bienvenut , Liam Le Goffic , Olivier Langella , Thierry Balliau , Melisande Blein-Nicolas

Analytics 2022, Sep 2022, Nantes, France

Poster de conférence hal-03773594v1
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Plateforme d'Analyse Protéomique de Paris Sud-Ouest (PAPPSO)

Céline Henry , Thierry Balliau , Willy Vincent Bienvenut , Marlène Davanture , Olivier Langella et al.

Journées scientifiques Biosphera, Oct 2022, Palaiseau, France

Poster de conférence hal-03878417v1
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Sub optimal 15N metabolic labelling in plant to determine protein turnovers: A new look at the isotopic distribution

Willy Vincent Bienvenut , Olivier Langella , Thierry Baillau , Filippo Rusconi , Marlène Davanture et al.

InPPO meeting, Mar 2021, Vancouvert, Canada

Poster de conférence hal-03683573v1

X!TandemPipeline new version brings native support of timsTOF raw data

Thomas Renne , Filippo Rusconi , Michel Zivy , Olivier Langella

JOBIM 2020, Jul 2020, Montpellier, France

Poster de conférence hal-03687673v1
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MassChroQ : A versatile tool for mass spectrometry quantification

Edlira Nano , Benoit Valot , Olivier Langella , Ludovic Bonhomme , Mélisande Blein et al.

Final COST meeting : Plant Proteomics in Europe, 2011, May 2011, Dijon, France

Poster de conférence hal-03663220v1

phpMyCampus, gestion d'un parc informatique à l'échelle d'un campus

Olivier Langella , Gilles Agogué , Philippe Peynot

JRES (Journées réseaux de l'enseignement et de la recherche ) 2003, Nov 2003, Lille, France. 2003

Poster de conférence hal-04802134v1

MCQR : Enhancing the Processing and Analysis of Quantitative Proteomics Data by Incorporating Chromatography and Mass Spectrometry Information

Thierry Balliau , Anne Frambourg , Olivier Langella , Marie-Laure Martin , Michel Zivy et al.

Journal of Proteome Research, 2025, ⟨10.1021/acs.jproteome.4c01119⟩

Article dans une revue hal-05087344v1
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(p)ppGpp modifies RNAP function to confer β-lactam resistance in a peptidoglycan-independent manner

Henri Voedts , Constantin Anoyatis-Pelé , Olivier Langella , Filippo Rusconi , Jean-Emmanuel Hugonnet et al.

Nature Microbiology, 2024, 9 (3), pp.647-656. ⟨10.1038/s41564-024-01609-w⟩

Article dans une revue hal-04492929v1
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Full native timsTOF PASEF-enabled quantitative proteomics with the i2MassChroQ software package

Olivier Langella , Thomas Renne , Thierry Balliau , Marlène Davanture , Sven Brehmer et al.

Journal of Proteome Research, In press, Online ahead of print. ⟨10.1021/acs.jproteome.3c00732⟩

Article dans une revue hal-04645948v2
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Fast alignment of mass spectra in large proteomics datasets, capturing dissimilarities arising from multiple complex modifications of peptides

Grégoire Prunier , Mehdi Cherkaoui , Albane Lysiak , Olivier Langella , Mélisande Blein-Nicolas et al.

BMC Bioinformatics, 2023, 24 (1), pp.421. ⟨10.1186/s12859-023-05555-y⟩

Article dans une revue hal-04296170v1
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Modern Metaproteomics: A Unique Tool to Characterize the Active Microbiome in Health and Diseases, and Pave the Road towards New Biomarkers—Example of Crohn’s Disease and Ulcerative Colitis Flare-Ups

Céline Henry , Ariane Bassignani , Magali Berland , Olivier Langella , Harry Sokol et al.

Cells, 2022, 11 (8), pp.1340. ⟨10.3390/cells11081340⟩

Article dans une revue hal-04007371v1
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A combined test for feature selection on sparse metaproteomics data—an alternative to missing value imputation

Sandra Plancade , Magali Berland , Mélisande Blein-Nicolas , Olivier Langella , Ariane Bassignani et al.

PeerJ, 2022, 10, pp.e13525. ⟨10.7717/peerj.13525⟩

Article dans une revue hal-04146583v1

Benefits of Iterative Searches of Large Databases to Interpret Large Human Gut Metaproteomic Data Sets

Ariane Bassignani , Sandra Plancade , Magali Berland , Melisande Blein-Nicolas , Alain Guillot et al.

Journal of Proteome Research, 2021, 20 (3), pp.1522-1534. ⟨10.1021/acs.jproteome.0c00669⟩

Article dans une revue hal-03135575v1

mineXpert2 : Full-Depth Visualization and Exploration of MS n Mass Spectrometry Data

Olivier Langella , Filippo Rusconi

Journal of The American Society for Mass Spectrometry, In press, ⟨10.1021/jasms.0c00402⟩

Article dans une revue hal-03166825v1
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Critical Assessment of MetaProteome Investigation (CAMPI): a multi-laboratory comparison of established workflows

Tim van den Bossche , Benoit Kunath , Kay Schallert , Stephanie Schäpe , Paul Abraham et al.

Nature Communications, 2021, 12 (1), pp. 7305. ⟨10.1038/s41467-021-27542-8⟩

Article dans une revue hal-04460334v1
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AgroDataRing: Une infrastructure partagée et mutualisée pour le stockage longue durée

Pierre Adenot , Stéphane Bansard , David Benaben , Veronique Brunaud , Christophe Caron et al.

Cahier des Techniques de l'INRA, 2018, N° Spécial: Données de la recherche, 7 p

Article dans une revue hal-02097192v1

X!TandemPipeline: a tool to manage sequence redundancy for protein inference and phosphosite identification

Olivier Langella , Benoît Valot , Thierry Balliau , Mélisande Blein-Nicolas , Ludovic Bonhomme et al.

Journal of Proteome Research, 2017, 16 (2), pp.494-503. ⟨10.1021/acs.jproteome.6b00632⟩

Article dans une revue hal-01484169v1

Large-scale phylogeographic study of the cosmopolitan aphid pest Brachycaudus helichrysi reveals host plant associated lineages that evolved in allopatry

Megan Popkin , Joséphine Piffaretti , Anne Laure Clamens , Ge-Xia Qiao , Jing Chen et al.

Biological Journal of the Linnean Society, 2017, 120 (1), pp.102 - 114

Article dans une revue hal-02623529v1

Interactions between genotype and environment drive the metabolic phenotype within Escherichia coli isolates

Victor Sabarly , Claire Aubron , Jérémy Glodt , Thierry Balliau , Olivier Langella et al.

Environmental Microbiology, 2016, 18 (1), pp.100-117. ⟨10.1111/1462-2920.12855⟩

Article dans une revue istex hal-01506467v1
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The Arabidopsis TOR Kinase Specifically Regulates the Expression of Nuclear Genes Coding for Plastidic Ribosomal Proteins and the Phosphorylation of the Cytosolic Ribosomal Protein S6

Thomas Dobrenel , Eder Mancera-Martinez , Céline Forzani , Marianne Azzopardi , Marlène Davanture et al.

Frontiers in Plant Science, 2016, 7, ⟨10.3389/fpls.2016.01611⟩

Article dans une revue hal-01532687v1
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O-Glycosylation of the N-terminal region of the serine-rich adhesin Srr1 of Streptococcus agalactiae explored by mass spectrometry.

Thibault Chaze , Alain Guillot , Benoît Valot , Olivier Langella , Julia Chamot-Rooke et al.

Molecular and Cellular Proteomics, 2014, 13 (9), pp.2168-82. ⟨10.1074/mcp.M114.038075⟩

Article dans une revue hal-01204448v1

Linking post-translational modifications and variation of phenotypic traits

Warren Albertin , Philippe Marullo , Marina Bely , Michel Aigle , Aurelie Bourgais et al.

Molecular and Cellular Proteomics, 2013, 12 (3), pp.720 - 735. ⟨10.1074/mcp.M112.024349⟩

Article dans une revue hal-01003318v1

Management and dissemination of MS proteomic data with PROTICdb: Example of a quantitative comparison between methods of protein extraction

Olivier Langella , Benoit B. Valot , Daniel Jacob , Thierry T. Balliau , Raphaël-Gauthier Flores et al.

Proteomics, 2013, 13 (9), pp.1457-1466. ⟨10.1002/pmic.201200564⟩

Article dans une revue istex hal-02651260v1
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MassChroQ: A versatile tool for mass spectrometry quantification

Benoit Valot , Olivier Langella , Edlira Nano , Michel Zivy

Proteomics, 2011, 11 (17), pp.3572 - 3577. ⟨10.1002/pmic.201100120⟩

Article dans une revue hal-01481216v1

Comparative proteomics of leaf, stem, and root tissues of synthetic Brassica napus

Warren Albertin , Olivier Langella , Johann Joets , Luc Negroni , Michel Zivy et al.

Proteomics, 2009, 9 (3), pp.793-799. ⟨10.1002/pmic.200800479⟩

Article dans une revue (data paper) istex hal-01608289v1

PROTICdb: a web-based application to store, track, query, and compare plant proteome data

Hélène Ferry Dumazet , Gwenn Houel , Pierre Montalent , Luc Moreau , Olivier Langella et al.

Proteomics, 2005, 5 (8), pp.2069-2081. ⟨10.1002/pmic.200401111⟩

Article dans une revue istex hal-02676901v1

PROTICdb: a web-based application to store, track, query, and compare plant proteome data

Hélène Ferry-Dumazet , Gwenn Houel , Pierre Montalent , Luc Moreau , Olivier Langella et al.

Proteomics, 2005, 5, pp.2069-2081

Article dans une revue hal-00306584v1

A two-dimensional proteome map of maize endosperm

Valérie Méchin , Thierry Balliau , S. Chateau-Joubert , Marlène Davanture , Olivier Langella et al.

Phytochemistry, 2004, 65 (11), pp.1609-1618. ⟨10.1016/j.phytochem.2004.04.035⟩

Article dans une revue istex hal-02675725v1

Full DDA quantitative proteomics with the i2MassChroQ software project

Olivier Langella , Filippo Rusconi

Journées du PROTEOME VERT, Institut Agro Montpellier, Jun 2024, Montpelier, France

Communication dans un congrès hal-04593889v1
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Logiciels libres : à la recherche du bien commun

Edlira Nano , Olivier Langella , Filippo Rusconi

JRES (Journées réseaux de l'enseignement et de la recherche ) 2021, Renater, May 2022, Marseille, France

Communication dans un congrès hal-04807360v1

Développements pour la protéomique végétale à haut-débit

Melisande Blein-Nicolas , Olivier Langella , Thomas Renne , Thierry Balliau , Marlène Davanture et al.

Journées du Protéome Vert, Jun 2022, Gif-sur-Yette, France

Communication dans un congrès hal-03878360v1
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Sub optimal 15N metabolic labelling in plant: A new way to perform large scale protein turnovers determination using the peptides isotopic distribution.

Willy Vincent Bienvenut , Olivier Langella , Thierry Balliau , Filippo Rusconi , Marlène Davanture et al.

ProteoVilamoura, Spanish, French and Portuguese Proteomics Societies, May 2022, VilaMoura, Portugal

Communication dans un congrès hal-03815633v1

i2MassChroQ: a TimsTOF pro enhanced data processing solution

Olivier Langella

Bruker PaSER and timsTOF Proteomics data processing, Nov 2022, Paris, France

Communication dans un congrès hal-03860048v1
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Logiciels libres : à la recherche du bien commun

Edlira Nano , Olivier Langella , Filippo Rusconi

Journées Réseaux de l'Enseignement et de la Recherche JRES 2022, May 2022, Marseille, France

Communication dans un congrès hal-03663215v1

SpecOMS, an open search approach challenging the identification of peptides showing sequence polymorphism

Luciana de Oliveira , Olivier Langella , Thierry Balliau , Dominique Tessier , Melisande Blein-Nicolas et al.

Journées du Protéome Vert, Jun 2021, Visioconférence, France

Communication dans un congrès hal-03879748v1

SpecOMS, an open modification search approach challenging high-throughput single amino acid variations identification

Luciana de Oliveira , Olivier Langella , Thierry Balliau , Dominique Tessier , Melisande Blein-Nicolas et al.

4th INPPO Conference, Mar 2021, Visioconférence, France

Communication dans un congrès hal-03879763v1

Fermentation rate, population size, CO2 flux and quantitative proteomics: a multi-level approach applied to alcoholic fermentation in Saccharomyces cerevisiae

Warren Albertin , Philippe Marullo , Michel Aigle , Aurélie Bourgais , Olivier Langella et al.

Oeno 2011. 9è Symposium International d'Oenologie de Bordeaux, Jun 2011, Bordeaux, France. 1186 p

Communication dans un congrès hal-01204311v1
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PROTIC workshop: A bioinformatics environment for proteome data validation, analysis and integration

Renaud Flores , Johann J. Joets , Olivier Langella , Benoit B. Valot , Michel M. Zivy et al.

Plant Genomics seminar 2010, Mar 2010, Pont Royal en Provence, France

Communication dans un congrès hal-02758409v1