Olivier Langella

54
Documents

Publications

Publications

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MCQR: Enhancing the processing and analysis of quantitative proteomics data by incorporating chromatography and mass spectrometry information

Thierry Balliau , Anne Aubert-Frambourg , Olivier Langella , Martin-Magniette Marie-Laure , Michel Zivy et al.
EUPA 2025 saint-Malo, Jun 2025, Saint Malo (FR), France
Poster de conférence hal-05113649 v1
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Identifying Single Amino Acid Variant with SpecOMS an OpenModification Search engine

Olivier Langella , Rémy Séraphin , Luciana de Oliveira , Melisande Blein-Nicolas
EUPA 2025, Jun 2025, Saint Malo (FR), France
Poster de conférence hal-05108269 v1
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Large scale plant protein turnover measurement

Willy Vincent Bienvenut , Marie-Hélène Andrieu , Olivier Langella , Thierry Balliau , Sophie Colombie et al.
Annual ASMS conference, Jun 2024, Anaheim (CA), United States
Poster de conférence hal-04590280 v1
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i2MassChroQ : full native timsTOF PASEF-enabled quantitative proteomics

Olivier Langella , Thierry Balliau , Marlène Davanture , Mélisande Blein-Nicolas , Filippo Rusconi
EuBIC-MS Winter School 2024, Jan 2024, Winterberg, Germany
Poster de conférence hal-04321638 v1
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Merging SpecOMS and X!Tandem identification results using machine learning algorithm in i2MassChroQ

Olivier Langella , Thierry Balliau , Marlène Davanture , Filippo Rusconi , Melisande Blein-Nicolas et al.
ProteoAix 2023 the 3rd Joint Meeting of Spanish, French, and Portuguese Proteomics Societies, Jun 2023, Aix en Provence, France
Poster de conférence hal-04103233 v1
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Upgrading X!TandemPipeline and MassChroQ for fast and accurate timsTOF native raw data support for quantitative proteomics

Olivier Langella , Thomas Renne , Thierry Balliau , Marlène Davanture , Sven Brehmer et al.
ProteoVilamoura 2022, May 2022, Vilamoura, Portugal
Poster de conférence hal-03687443 v1
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Open Modification Search using SpecOMS and i2MassChroQ

Olivier Langella , Luciana de Oliveira , Michel Zivy , Melisande Blein-Nicolas , Dominique Tessier
analytics 2022, Sep 2022, Nantes, France
Poster de conférence hal-03735820 v1
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X!TandemPipeline++: Software for Ion Mobility-Enabled Quantitative Proteomics in timsTOF Data Format

Olivier Langella , Thomas Renne , Thierry Balliau , Marlène Davanture , Sven Brehmer et al.
70th ASMS Conference on Mass Spectrometry and Allied Topics ( ASMS 2022 ), Jun 2022, Minneapolis, United States.
Poster de conférence hal-03687564 v1
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Sub optimal 15N metabolic labelling in plant: A new way to perform large scale protein turnovers determination using the peptides isotopic distribution

Willy Vincent Bienvenut , Liam Le Goffic , Olivier Langella , Thierry Balliau , Melisande Blein-Nicolas
Analytics 2022, Sep 2022, Nantes, France
Poster de conférence hal-03773594 v1
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i2MassChroQ: Software for Ion Mobility-Enabled Quantitative Proteomics in timsTOF Data Format

Olivier Langella , Thomas Renne , Thierry Balliau , Marlène Davanture , Sven Brehmer et al.
Analytics 2022, Sep 2022, Nantes, France
Poster de conférence hal-03776788 v1
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Plateforme d'Analyse Protéomique de Paris Sud-Ouest (PAPPSO)

Céline Henry , Thierry Balliau , Willy Vincent Bienvenut , Marlène Davanture , Olivier Langella et al.
Journées scientifiques Biosphera, Oct 2022, Palaiseau, France
Poster de conférence hal-03878417 v1
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Sub optimal 15N metabolic labelling in plant to determine protein turnovers: A new look at the isotopic distribution

Willy Vincent Bienvenut , Olivier Langella , Thierry Baillau , Filippo Rusconi , Marlène Davanture et al.
InPPO meeting, Mar 2021, Vancouvert, Canada
Poster de conférence hal-03683573 v1

X!TandemPipeline new version brings native support of timsTOF raw data

Thomas Renne , Filippo Rusconi , Michel Zivy , Olivier Langella
JOBIM 2020, Jul 2020, Montpellier, France
Poster de conférence hal-03687673 v1
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MassChroQ : A versatile tool for mass spectrometry quantification

Edlira Nano , Benoit Valot , Olivier Langella , Ludovic Bonhomme , Mélisande Blein et al.
Final COST meeting : Plant Proteomics in Europe, 2011, May 2011, Dijon, France
Poster de conférence hal-03663220 v1

phpMyCampus, gestion d'un parc informatique à l'échelle d'un campus

Olivier Langella , Gilles Agogué , Philippe Peynot
JRES (Journées réseaux de l'enseignement et de la recherche ) 2003, Nov 2003, Lille, France. 2003
Poster de conférence hal-04802134 v1

MCQR : Enhancing the Processing and Analysis of Quantitative Proteomics Data by Incorporating Chromatography and Mass Spectrometry Information

Thierry Balliau , Anne Frambourg , Olivier Langella , Marie-Laure Martin , Michel Zivy et al.
Journal of Proteome Research, 2025, ⟨10.1021/acs.jproteome.4c01119⟩
Article dans une revue hal-05087344 v1
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(p)ppGpp modifies RNAP function to confer β-lactam resistance in a peptidoglycan-independent manner

Henri Voedts , Constantin Anoyatis-Pelé , Olivier Langella , Filippo Rusconi , Jean-Emmanuel Hugonnet et al.
Nature Microbiology, 2024, 9 (3), pp.647-656. ⟨10.1038/s41564-024-01609-w⟩
Article dans une revue hal-04492929 v1
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Full native timsTOF PASEF-enabled quantitative proteomics with the i2MassChroQ software package

Olivier Langella , Thomas Renne , Thierry Balliau , Marlène Davanture , Sven Brehmer et al.
Journal of Proteome Research, In press, Online ahead of print. ⟨10.1021/acs.jproteome.3c00732⟩
Article dans une revue hal-04645948 v2
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Fast alignment of mass spectra in large proteomics datasets, capturing dissimilarities arising from multiple complex modifications of peptides

Grégoire Prunier , Mehdi Cherkaoui , Albane Lysiak , Olivier Langella , Mélisande Blein-Nicolas et al.
BMC Bioinformatics, 2023, 24 (1), pp.421. ⟨10.1186/s12859-023-05555-y⟩
Article dans une revue hal-04296170 v1
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Modern Metaproteomics: A Unique Tool to Characterize the Active Microbiome in Health and Diseases, and Pave the Road towards New Biomarkers—Example of Crohn’s Disease and Ulcerative Colitis Flare-Ups

Céline Henry , Ariane Bassignani , Magali Berland , Olivier Langella , Harry Sokol et al.
Cells, 2022, 11 (8), pp.1340. ⟨10.3390/cells11081340⟩
Article dans une revue hal-04007371 v1
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A combined test for feature selection on sparse metaproteomics data—an alternative to missing value imputation

Sandra Plancade , Magali Berland , Mélisande Blein-Nicolas , Olivier Langella , Ariane Bassignani et al.
PeerJ, 2022, 10, pp.e13525. ⟨10.7717/peerj.13525⟩
Article dans une revue hal-04146583 v1
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Critical Assessment of MetaProteome Investigation (CAMPI): a multi-laboratory comparison of established workflows

Tim van den Bossche , Benoit Kunath , Kay Schallert , Stephanie Schäpe , Paul Abraham et al.
Nature Communications, 2021, 12 (1), pp. 7305. ⟨10.1038/s41467-021-27542-8⟩
Article dans une revue hal-04460334 v1

mineXpert2 : Full-Depth Visualization and Exploration of MS n Mass Spectrometry Data

Olivier Langella , Filippo Rusconi
Journal of The American Society for Mass Spectrometry, In press, ⟨10.1021/jasms.0c00402⟩
Article dans une revue hal-03166825 v1

Benefits of Iterative Searches of Large Databases to Interpret Large Human Gut Metaproteomic Data Sets

Ariane Bassignani , Sandra Plancade , Magali Berland , Melisande Blein-Nicolas , Alain Guillot et al.
Journal of Proteome Research, 2021, 20 (3), pp.1522-1534. ⟨10.1021/acs.jproteome.0c00669⟩
Article dans une revue hal-03135575 v1
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AgroDataRing: Une infrastructure partagée et mutualisée pour le stockage longue durée

Pierre Adenot , Stéphane Bansard , David Benaben , Veronique Brunaud , Christophe Caron et al.
Cahier des Techniques de l'INRA, 2018, N° Spécial: Données de la recherche, 7 p
Article dans une revue hal-02097192 v1

X!TandemPipeline: a tool to manage sequence redundancy for protein inference and phosphosite identification

Olivier Langella , Benoît Valot , Thierry Balliau , Mélisande Blein-Nicolas , Ludovic Bonhomme et al.
Journal of Proteome Research, 2017, 16 (2), pp.494-503. ⟨10.1021/acs.jproteome.6b00632⟩
Article dans une revue hal-01484169 v1

Large-scale phylogeographic study of the cosmopolitan aphid pest Brachycaudus helichrysi reveals host plant associated lineages that evolved in allopatry

Megan Popkin , Joséphine Piffaretti , Anne Laure Clamens , Ge-Xia Qiao , Jing Chen et al.
Biological Journal of the Linnean Society, 2017, 120 (1), pp.102 - 114
Article dans une revue hal-02623529 v1

Interactions between genotype and environment drive the metabolic phenotype within Escherichia coli isolates

Victor Sabarly , Claire Aubron , Jérémy Glodt , Thierry Balliau , Olivier Langella et al.
Environmental Microbiology, 2016, 18 (1), pp.100-117. ⟨10.1111/1462-2920.12855⟩
Article dans une revue istex hal-01506467 v1
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The Arabidopsis TOR Kinase Specifically Regulates the Expression of Nuclear Genes Coding for Plastidic Ribosomal Proteins and the Phosphorylation of the Cytosolic Ribosomal Protein S6

Thomas Dobrenel , Eder Mancera-Martinez , Céline Forzani , Marianne Azzopardi , Marlène Davanture et al.
Frontiers in Plant Science, 2016, 7, ⟨10.3389/fpls.2016.01611⟩
Article dans une revue hal-01532687 v1
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O-Glycosylation of the N-terminal region of the serine-rich adhesin Srr1 of Streptococcus agalactiae explored by mass spectrometry.

Thibault Chaze , Alain Guillot , Benoît Valot , Olivier Langella , Julia Chamot-Rooke et al.
Molecular and Cellular Proteomics, 2014, 13 (9), pp.2168-82. ⟨10.1074/mcp.M114.038075⟩
Article dans une revue hal-01204448 v1

Linking post-translational modifications and variation of phenotypic traits

Warren Albertin , Philippe Marullo , Marina Bely , Michel Aigle , Aurelie Bourgais et al.
Molecular and Cellular Proteomics, 2013, 12 (3), pp.720 - 735. ⟨10.1074/mcp.M112.024349⟩
Article dans une revue hal-01003318 v1

Management and dissemination of MS proteomic data with PROTICdb: Example of a quantitative comparison between methods of protein extraction

Olivier Langella , Benoit B. Valot , Daniel Jacob , Thierry T. Balliau , Raphaël-Gauthier Flores et al.
Proteomics, 2013, 13 (9), pp.1457-1466. ⟨10.1002/pmic.201200564⟩
Article dans une revue istex hal-02651260 v1
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MassChroQ: A versatile tool for mass spectrometry quantification

Benoit Valot , Olivier Langella , Edlira Nano , Michel Zivy
Proteomics, 2011, 11 (17), pp.3572 - 3577. ⟨10.1002/pmic.201100120⟩
Article dans une revue hal-01481216 v1

Comparative proteomics of leaf, stem, and root tissues of synthetic Brassica napus

Warren Albertin , Olivier Langella , Johann Joets , Luc Negroni , Michel Zivy et al.
Proteomics, 2009, 9 (3), pp.793-799. ⟨10.1002/pmic.200800479⟩
Article dans une revue (data paper) istex hal-01608289 v1

PROTICdb: a web-based application to store, track, query, and compare plant proteome data

Hélène Ferry-Dumazet , Gwenn Houel , Pierre Montalent , Luc Moreau , Olivier Langella et al.
Proteomics, 2005, 5, pp.2069-2081
Article dans une revue hal-00306584 v1

PROTICdb: a web-based application to store, track, query, and compare plant proteome data

Hélène Ferry Dumazet , Gwenn Houel , Pierre Montalent , Luc Moreau , Olivier Langella et al.
Proteomics, 2005, 5 (8), pp.2069-2081. ⟨10.1002/pmic.200401111⟩
Article dans une revue istex hal-02676901 v1

A two-dimensional proteome map of maize endosperm

Valérie Méchin , Thierry Balliau , S. Chateau-Joubert , Marlène Davanture , Olivier Langella et al.
Phytochemistry, 2004, 65 (11), pp.1609-1618. ⟨10.1016/j.phytochem.2004.04.035⟩
Article dans une revue istex hal-02675725 v1

Full DDA quantitative proteomics with the i2MassChroQ software project

Olivier Langella , Filippo Rusconi
Journées du PROTEOME VERT, Institut Agro Montpellier, Jun 2024, Montpelier, France
Communication dans un congrès hal-04593889 v1
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Sub optimal 15N metabolic labelling in plant: A new way to perform large scale protein turnovers determination using the peptides isotopic distribution.

Willy Vincent Bienvenut , Olivier Langella , Thierry Balliau , Filippo Rusconi , Marlène Davanture et al.
ProteoVilamoura, Spanish, French and Portuguese Proteomics Societies, May 2022, VilaMoura, Portugal
Communication dans un congrès hal-03815633 v1
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Logiciels libres : à la recherche du bien commun

Edlira Nano , Olivier Langella , Filippo Rusconi
JRES (Journées réseaux de l'enseignement et de la recherche ) 2021, Renater, May 2022, Marseille, France
Communication dans un congrès hal-04807360 v1

Développements pour la protéomique végétale à haut-débit

Melisande Blein-Nicolas , Olivier Langella , Thomas Renne , Thierry Balliau , Marlène Davanture et al.
Journées du Protéome Vert, Jun 2022, Gif-sur-Yette, France
Communication dans un congrès hal-03878360 v1
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Logiciels libres : à la recherche du bien commun

Edlira Nano , Olivier Langella , Filippo Rusconi
Journées Réseaux de l'Enseignement et de la Recherche JRES 2022, May 2022, Marseille, France
Communication dans un congrès hal-03663215 v1

i2MassChroQ: a TimsTOF pro enhanced data processing solution

Olivier Langella
Bruker PaSER and timsTOF Proteomics data processing, Nov 2022, Paris, France
Communication dans un congrès hal-03860048 v1

SpecOMS, an open search approach challenging the identification of peptides showing sequence polymorphism

Luciana de Oliveira , Olivier Langella , Thierry Balliau , Dominique Tessier , Melisande Blein-Nicolas et al.
Journées du Protéome Vert, Jun 2021, Visioconférence, France
Communication dans un congrès hal-03879748 v1

SpecOMS, an open modification search approach challenging high-throughput single amino acid variations identification

Luciana de Oliveira , Olivier Langella , Thierry Balliau , Dominique Tessier , Melisande Blein-Nicolas et al.
4th INPPO Conference, Mar 2021, Visioconférence, France
Communication dans un congrès hal-03879763 v1

Fermentation rate, population size, CO2 flux and quantitative proteomics: a multi-level approach applied to alcoholic fermentation in Saccharomyces cerevisiae

Warren Albertin , Philippe Marullo , Michel Aigle , Aurélie Bourgais , Olivier Langella et al.
Oeno 2011. 9è Symposium International d'Oenologie de Bordeaux, Jun 2011, Bordeaux, France. 1186 p
Communication dans un congrès hal-01204311 v1
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PROTIC workshop: A bioinformatics environment for proteome data validation, analysis and integration

Renaud Flores , Johann J. Joets , Olivier Langella , Benoit B. Valot , Michel M. Zivy et al.
Plant Genomics seminar 2010, Mar 2010, Pont Royal en Provence, France
Communication dans un congrès hal-02758409 v1