Perrine Paul-Gilloteaux

61 %
Libre accès
173
Documents
Affiliation actuelle
  • BioCore [Nantes]
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Présentation


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Publications

Learn2Reg 2024: New Benchmark Datasets Driving Progress on New Challenges

Lasse Hansen , Wiebke Heyer , Christoph Großbröhmer , Frederic Madesta , Thilo Sentker et al.

Journal of Machine Learning for Biomedical Imaging, 2025, 3 (December 2025), pp.775-791. ⟨10.59275/j.melba.2025-gc8c⟩

Article dans une revue hal-05447071v1
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F-BIAS: Towards a distributed national core facility for bioimage analysis

Mélodie Ambroset , Marie Anselmet , Clément Benedetti , Arthur Meslin , Aurélien Maillot et al.

PLoS Computational Biology, 2025, 21 (6), pp.e1013058. ⟨10.1371/journal.pcbi.1013058⟩

Article dans une revue hal-05165608v1
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Single cell profiling of circulating autoreactive CD4 T cells from patients with autoimmune liver diseases suggests tissue imprinting

Anaïs Cardon , Thomas Guinebretière , Chuang Dong , Laurine Gil , Sakina Ado et al.

Nature Communications, 2025, 16 (1), pp.1161. ⟨10.1038/s41467-025-56363-2⟩

Article dans une revue hal-04926864v1

Multiplexing for a better understanding of the tissue environment: presentation of some methods

Stéphanie Blandin , Aurélie Domene , Philippe Hulin , Aurélie Joussaume , Steven Nedellec et al.

Revue Française d'Histotechnologie, 2025, 37 (1), pp.65-93. ⟨10.25830/afh.rfh.2025.37.1.65⟩

Article dans une revue hal-05219781v1
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The bacterial type three secretion system induces mechanoporation of vacuolar membranes

Léa Swistak , Marvin Albert , Camila Valenzuela , Elif Begüm Gökerküçük , Matthijn Vos et al.

PLoS Biology, 2025, 23 (5), pp.e3003135. ⟨10.1371/journal.pbio.3003135⟩

Article dans une revue hal-05056483v1

MIFA: Metadata, Incentives, Formats and Accessibility guidelines to improve the reuse of AI datasets for bioimage analysis

Teresa Zulueta-Coarasa , Florian Jug , Aastha Mathur , Josh Moore , Arrate Muñoz-Barrutia et al.

Nature Methods, 2025, Online ahead of print. ⟨10.1038/s41592-025-02835-8⟩

Article dans une revue hal-05307369v1

Deep Learning‐Based Blood Abnormalities Detection as a Tool for VEXAS Syndrome Screening

Cédric de Almeida Braga , Maxence Bauvais , Pierre Sujobert , Maël Heiblig , Maxime Jullien et al.

International Journal of Laboratory Hematology, 2024, ⟨10.1111/ijlh.14368⟩

Article dans une revue hal-04778186v1
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The crucial role of bioimage analysts in scientific research and publication

Beth Cimini , Peter Bankhead , Rocco d'Antuono , Elnaz Fazeli , Julia Fernandez-Rodriguez et al.

Journal of Cell Science, 2024, 137 (20), ⟨10.1242/jcs.262322⟩

Article dans une revue hal-04765111v1
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Correlated multimodal imaging in life sciences: lessons learnt

Pavitra Sokke Rudraiah , Rafael Camacho , Julia Fernandez-Rodriguez , Dror Fixler , Jan Grimm et al.

Frontiers in Biomaterials Science, 2024, 3, pp.1338115. ⟨10.3389/fbiom.2024.1338115⟩

Article dans une revue (article de synthèse) hal-05080566v1

Deep Learning Based Blood Abnormalities Detection As a Tool for Vexas Syndrome Screening

Cedric de Almeida Braga , Maxence Bauvais , Pierre Sujobert , Mael Heiblig , Maxime Jullien et al.

Blood, 2023, 142 (Supplement 1), pp.3648-3648. ⟨10.1182/blood-2023-186874⟩

Article dans une revue hal-04456433v1
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Visualizing enteric nervous system activity through dye-free dynamic full-field optical coherence tomography

Tony Durand , Perrine Paul-Gilloteaux , Michalina Gora , Lara Laboudie , Emmanuel Coron et al.

Communications Biology, 2023, 6 (1), pp.236. ⟨10.1038/s42003-023-04593-9⟩

Article dans une revue hal-04013867v1
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Multimodality imaging and transcriptomics to phenotype mitral valve dystrophy in a unique knock-in Filamin-A rat model

Constance Delwarde , Claire Toquet , Pascal Aumond , Amir Hossein Kayvanjoo , Adrien Foucal et al.

Cardiovascular Research, 2023, 119 (3), pp.759-771. ⟨10.1093/cvr/cvac136⟩

Article dans une revue hal-03765601v1
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Bioimage informatics: Investing in software usability is essential

Perrine Paul-Gilloteaux

PLoS Biology, 2023, 21 (7), pp.e3002213. ⟨10.1371/journal.pbio.3002213⟩

Article dans une revue hal-04175990v1
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A time-lapse embryo dataset for morphokinetic parameter prediction

Tristan Gomez , Magalie Feyeux , Justine Boulant , Nicolas Normand , Laurent David et al.

Data in Brief, 2022, pp.108258. ⟨10.1016/j.dib.2022.108258⟩

Article dans une revue hal-03667158v1
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A flexible open-source processing workflow for multiplexed fluorescence imaging based on cycles

Guillaume Potier , Aurélie Doméné , Perrine Paul-Gilloteaux

F1000Research, 2022, 11, pp.1121. ⟨10.12688/f1000research.124990.1⟩

Article dans une revue hal-03791824v1

Sample preparation and image registration for correlative cryo-FM and cryo-FIB-SEM of plunge-frozen mammalian cells

Nadav Scher , Katya Rechav , Perrine Paul-Gilloteaux , Ori Avinoam

STAR Protocols, 2022, 3 (1), pp.101142. ⟨10.1016/j.xpro.2022.101142⟩

Article dans une revue hal-03745072v1
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In situ fiducial markers for 3D correlative cryo-fluorescence and FIB-SEM imaging

Nadav Scher , Katya Rechav , Perrine Paul-Gilloteaux , Ori Avinoam

iScience, 2021, 24 (7), pp.102714. ⟨10.1016/j.isci.2021.102714⟩

Article dans une revue hal-03278159v1
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Bioimage analysis workflows: community resources to navigate through a complex ecosystem

Perrine Paul-Gilloteaux , Sébastien Tosi , Jean-Karim Hériché , Alban Gaignard , Hervé Ménager et al.

F1000Research, 2021, 10, pp.320. ⟨10.12688/f1000research.52569.1⟩

Article dans une revue hal-03208600v1

QUAREP‐LiMi: A community‐driven initiative to establish guidelines for quality assessment and reproducibility for instruments and images in light microscopy

Glyn Nelson , Ulrike Boehm , Steve Bagley , Peter Bajcsy , Johanna Bischof et al.

Journal of Microscopy, 2021, 284 (1), pp.56-73. ⟨10.1111/jmi.13041⟩

Article dans une revue hal-03745112v1
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Highlights from the 2016-2020 NEUBIAS training schools for Bioimage Analysts: a success story and key asset for analysts and life scientists

Gabriel Martins , Fabrice Cordelières , Julien Colombelli , Rocco D’antuono , Ofra Golani et al.

F1000Research, 2021, 10, pp.334. ⟨10.12688/f1000research.25485.1⟩

Article dans une revue hal-03214896v1
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An LDV based method to quantify the error of PC-MRI derived Wall Shear Stress measurement

Marco Castagna , Sébastien Levilly , Perrine Paul-Gilloteaux , Saïd Moussaoui , Jean-Marc Rousset et al.

Scientific Reports, 2021, 11 (1), pp.4112. ⟨10.1038/s41598-021-83633-y⟩

Article dans une revue hal-03149044v1

Protocol for image registration of correlative soft X-ray tomography and super-resolution structured illumination microscopy images

Nina Vyas , Stephan Kunne , Thomas Fish , Ian Dobbie , Maria Harkiolaki et al.

STAR Protocols, 2021, 2 (2), pp.100529. ⟨10.1016/j.xpro.2021.100529⟩

Article dans une revue hal-03223460v1
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REMBI: Recommended Metadata for Biological Images—enabling reuse of microscopy data in biology

Ugis Sarkans , Wah Chiu , Lucy Collinson , Michele Darrow , Jan Ellenberg et al.

Nature Methods, 2021, ⟨10.1038/s41592-021-01166-8⟩

Article dans une revue hal-03232628v1
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Correlated Multimodal Imaging in Life Sciences: Expanding the Biomedical Horizon

Andreas Walter , Perrine Paul-Gilloteaux , Birgit Plochberger , Ludek Sefc , Paul Verkade et al.

Frontiers in Physics, 2020, 8, ⟨10.3389/fphy.2020.00047⟩

Article dans une revue hal-02539357v1
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Kinetics of Plasmodium midgut invasion in Anopheles mosquitoes

Gloria Volohonsky , Perrine Paul-Gilloteaux , Jitka Štáfková , Julien Soichot , Jean Salamero et al.

PLoS Pathogens, 2020, 16 (9), ⟨10.1371/journal.ppat.1008739⟩

Article dans une revue hal-03093938v1

Imagerie tri-dimensionnelle d’échantillons par une technique de serial block face imaging amovible

Marine Malloci , Stéphanie Blandin , Philippe Hulin , Paul Dorval , Steven Nedellec et al.

Revue Française d'Histotechnologie, 2020, 32 (1), pp.187-197. ⟨10.25830/afh.rfh.2020.32.187.197⟩

Article dans une revue hal-03196150v1
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Towards Quantitative Evaluation of Wall Shear Stress from 4D Flow Imaging

Sébastien Levilly , Marco Castagna , Jérôme Idier , Félicien Bonnefoy , David Le Touzé et al.

Magnetic Resonance Imaging, 2020, ⟨10.1016/j.mri.2020.08.017⟩

Article dans une revue hal-02564861v1

Development of automated annotation software for human embryo morphokinetics

M. Feyeux , Arnaud Reignier , M. Mocaer , Jenna Lammers , Dimitri Meistermann et al.

Human Reproduction, 2020, 35 (3), pp.557-564. ⟨10.1093/humrep/deaa001⟩

Article dans une revue hal-02509917v1

BIAFLOWS: A Collaborative Framework to Reproducibly Deploy and Benchmark Bioimage Analysis Workflows

Ulysse Rubens , Romain Mormont , Lassi Paavolainen , Volker Bäcker , Benjamin Pavie et al.

Patterns, 2020, 1, pp.100040. ⟨10.1016/j.patter.2020.100040⟩

Article dans une revue hal-02799349v1
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3D Correlative Cryo-Structured Illumination Fluorescence and Soft X-ray Microscopy Elucidates Reovirus Intracellular Release Pathway

Ilias Kounatidis , Megan Stanifer , Michael Phillips , Perrine Paul-Gilloteaux , Xavier Heiligenstein et al. Article dans une revue hal-02886173v1
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The NEUBIAS Gateway: a hub for bioimage analysis methods and materials

Beth Cimini , Simon Nørrelykke , Marion Louveaux , Nataša Sladoje , Perrine Paul-Gilloteaux et al.

F1000Research, 2020, 9, pp.613. ⟨10.12688/f1000research.24759.1⟩

Article dans une revue hal-02903660v1
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Automatic Registration of Correlative Microscopies with Error Assessment and Applications for the Optimization of Multimodal Acquisitions.

Guillaume Potier , Romain Capoulade , Jean Merot , Frédéric Lavancier , Xavier Heiligenstein et al.

Microscopy and Microanalysis, 2019, 25 (S2), pp.1020-1021. ⟨10.1017/S143192761900583X⟩

Article dans une revue hal-02267554v1
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In-vitro validation of 4D flow MRI measurements with an experimental pulsatile flow model

A. David , D. Le Touzé , Thierry Le Tourneau , P. Paul-Gilloteaux , F. Bonnefoy et al.

Diagnostic and Interventional Imaging, 2019, 100 (1), pp.17-23. ⟨10.1016/j.diii.2018.08.012⟩

Article dans une revue hal-02267542v1

EP-1998: In silico modelling of the impact of the fractionation for hypofractionated prostate treatments

G. Delpon , J. N'Guessan , Perrine Paul-Gilloteaux , K. Clément-Colmou , V. Potiron et al.

Radiotherapy & Oncology, 2018, 127 (S2), pp.S1086-S1087. ⟨10.1016/S0167-8140(18)32307-7⟩

Article dans une revue hal-02736053v1

eC-CLEM: A multidimension, multimodel software to correlate intermodal images with a focus on light and electron microscopy.

Xavier Heiligenstein , Perrine Paul-Gilloteaux , Graça Raposo , Jean Salamero

Methods in Cell Biology, 2018, pp.335-352. ⟨10.1016/bs.mcb.2017.03.014⟩

Article dans une revue hal-01712180v1
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Human Motor Thalamus Reconstructed in 3D from Continuous Sagittal Sections with Identified Subcortical Afferent Territories

Igor Ilinsky , Andreas Horn , Perrine Paul-Gilloteaux , Pierre Gressens , Catherine Verney et al.

eNeuro, 2018, 5 (3), pp.ENEURO.0060-18.2018. ⟨10.1523/ENEURO.0060-18.2018⟩

Article dans une revue hal-02267562v1
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LINC complex-Lis1 interplay controls MT1-MMP matrix digest-on-demand response for confined tumor cell migration

Elvira Infante , Alessia Castagnino , Robin Ferrari , Pedro Monteiro , Sonia Agüera-González et al.

Nature Communications, 2018, 9 (1), ⟨10.1038/s41467-018-04865-7⟩

Article dans une revue hal-02267545v1
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Optimizing radiotherapy protocols using computer automata to model tumour cell death as a function of oxygen diffusion processes

Perrine Paul-Gilloteaux , Vincent Potiron , Grégory Delpon , Stéphane Supiot , Sophie Chiavassa et al.

Scientific Reports, 2017, 7 (1), pp.2280. ⟨10.1038/s41598-017-01757-6⟩

Article dans une revue inserm-01550008v1

eC-CLEM: Flexible Multidimensional Registration Software for Correlative Microscopies with Refined Accuracy Mapping

Xavier Heiligenstein , Perrine Paul-Gilloteaux , Martin Belle , Graca Raposo , Jean Salamero

Microscopy and Microanalysis, 2017, 23 (S1), pp.360-361. ⟨10.1017/S1431927617002483⟩

Article dans une revue hal-02735782v1

L. fermentum CECT 5716 prevents stress-induced intestinal barrier dysfunction in newborn rats

T. Vanhaecke , P. Aubert , P. Grohard , Thierry Durand , P. Hulin et al.

Neurogastroenterology & Motility, 2017, 29 (8), pp.e13069. ⟨10.1111/nmo.13069⟩

Article dans une revue hal-01712194v1

eC-CLEM: flexible multidimensional registration software for correlative microscopies

Perrine Paul-Gilloteaux , Xavier Heiligenstein , Martin Belle , Marie-Charlotte Domart , Banafshe Larijani et al.

Nature Methods, 2017, 14 (2), pp.102 - 103. ⟨10.1038/nmeth.4170⟩

Article dans une revue hal-01712184v1

Direct interaction between exocyst and Wave complexes promotes cell protrusions and motility.

Marco Biondini , Amel Sadou-Dubourgnoux , Perrine Paul-Gilloteaux , Giulia Zago , Melis D Arslanhan et al.

Journal of Cell Science, 2016, 129 (20), pp.3756-3769. ⟨10.1242/jcs.187336⟩

Article dans une revue hal-01452011v1

Control of the collective migration of enteric neural crest cells by the Complement anaphylatoxin C3a and N-cadherin

Florence Bondon Bondon Broders , Florence Broders-Bondon , Perrine Paul-Gilloteaux , Elodie Gazquez , Julie Heysch et al.

Developmental Biology, 2016, 414 (1), pp.85-99. ⟨10.1016/j.ydbio.2016.03.022⟩

Article dans une revue hal-03043888v1

Endothelin-3 stimulates cell adhesion and cooperates with β1-integrins during enteric nervous system ontogenesis

Florence Bondon Bondon Broders , Elodie Gazquez , Yuli Watanabe , Florence Broders-Bondon , Perrine Paul-Gilloteaux et al.

Scientific Reports, 2016, 6 (1), ⟨10.1038/srep37877⟩

Article dans une revue hal-03043883v1
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Endothelin-3 stimulates cell adhesion and cooperates with β1-integrins during enteric nervous system ontogenesis

Elodie Gazquez , Yuli Watanabe , Florence Broders-Bondon , Perrine Paul-Gilloteaux , Julie Heysch et al.

Scientific Reports, 2016, 6, pp.37877. ⟨10.1038/srep37877⟩

Article dans une revue hal-01426076v1

Control of the collective migration of enteric neural crest cells by the Complement anaphylatoxin C3a and N-cadherin

Florence Broders-Bondon , Perrine Paul-Gilloteaux , Elodie Gazquez , Julie Heysch , Matthieu Piel et al.

Developmental Biology, 2016, 414 (1), pp.85 - 99. ⟨10.1016/j.ydbio.2016.03.022⟩

Article dans une revue hal-01712198v1

Quantitative analysis of flagellar proteins in Drosophila sperm tails.

Teresa Mendes Maia , Perrine Paul-Gilloteaux , Renata Basto

Methods in Cell Biology, 2015, pp.263-78. ⟨10.1016/bs.mcb.2015.01.003⟩

Article dans une revue hal-01712207v1
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Myosin 1b functions as an effector of EphB signaling to control cell repulsion

Marie-Thérèse Prospéri , Priscilla Lépine , Florent Dingli , Perrine Paul-Gilloteaux , René Martin et al.

Journal of Cell Biology, 2015, 210 (2), pp.347 - 361. ⟨10.1083/jcb.201501018⟩

Article dans une revue hal-01712201v1
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Objective comparison of particle tracking methods

Nicolas Chenouard , Ihor Smal , Fabrice de Chaumont , Martin Maska , Ivo F. Sbalzarini et al.

Nature Methods, 2014, 11 (3), pp.281-289. ⟨10.1038/nmeth.2808⟩

Article dans une revue hal-00932869v1
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Control of MT1-MMP transport by atypical PKC during breast-cancer progression

Carine Rossé , Catalina Lodillinsky , Laetitia Fuhrmann , Maya Nourieh , Pedro Monteiro et al.

Proceedings of the National Academy of Sciences of the United States of America, 2014, 111 (18), pp.E1872 - E1879. ⟨10.1073/pnas.1400749111⟩

Article dans une revue hal-01712228v1

Concomitant Notch activation and p53 deletion trigger epithelial-to-mesenchymal transition and metastasis in mouse gut

Maia Chanrion , Inna Kuperstein , Cédric Barrière , Fatima El Marjou , David Cohen et al.

Nature Communications, 2014, 5 (1), pp.5005. ⟨10.1038/ncomms6005⟩

Article dans une revue hal-03941284v1
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Concomitant Notch activation and p53 deletion trigger epithelial-to-mesenchymal transition and metastasis in mouse gut

Maia Chanrion , Inna Kuperstein , Cédric Barrière , Fatima El Marjou , David Cohen et al.

Nature Communications, 2014, 5, pp.5005. ⟨10.1038/ncomms6005⟩

Article dans une revue hal-01712223v1
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Septin6 and Septin7 GTP Binding Proteins Regulate AP-3- and ESCRT-Dependent Multivesicular Body Biogenesis

Sofia Traikov , Christoph Stange , Thomas Wassmer , Perrine Paul-Gilloteaux , Jean Salamero et al.

PLoS ONE, 2014, 9 (11), pp.e109372. ⟨10.1371/journal.pone.0109372⟩

Article dans une revue hal-01712221v1

Fast high-resolution 3D total internal reflection fluorescence microscopy by incidence angle scanning and azimuthal averaging.

Jérôme Boulanger , Charles Gueudry , Daniel Münch , Bertrand Cinquin , Perrine Paul-Gilloteaux et al.

Proceedings of the National Academy of Sciences of the United States of America, 2014, 111 (48), pp.17164-9

Article dans une revue hal-01133826v1
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Recycling Endosome Tubule Morphogenesis from Sorting Endosomes Requires the Kinesin Motor KIF13A

Cédric Delevoye , Stephanie Miserey-Lenkei , Guillaume Montagnac , Floriane Gilles-Marsens , Perrine Paul-Gilloteaux et al.

Cell Reports, 2014, 6 (3), pp.445-454. ⟨10.1016/j.celrep.2014.01.002⟩

Article dans une revue hal-02735329v1
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The CryoCapsule: Simplifying Correlative Light to Electron Microscopy

Xavier Heiligenstein , Jérôme Heiligenstein , Cédric Delevoye , Ilse Hurbain , Sabine Bardin et al.

Traffic, 2014, 15 (6), pp.700 - 716. ⟨10.1111/tra.12164⟩

Article dans une revue hal-01712232v1

Sox10 and Itgb1 interaction in enteric neural crest cell migration

Yuli Watanabe , Florence Broders-Bondon , Viviane Baral , Perrine Paul-Gilloteaux , Veronique Pingault et al.

Developmental Biology, 2013, 379 (1), pp.92 - 106. ⟨10.1016/j.ydbio.2013.04.013⟩

Article dans une revue hal-01712242v1

Endosomal WASH and exocyst complexes control exocytosis of MT1-MMP at invadopodia

Pedro Monteiro , Carine Rossé , Antonio Castro-Castro , Marie Irondelle , Emilie Lagoutte et al.

Journal of Cell Biology, 2013, 203 (6), pp.1063 - 1079. ⟨10.1083/jcb.201306162⟩

Article dans une revue hal-01712237v1

The first World Cell Race (vol 22, pg R673, 2012)

Paolo Maiuri , Emmanuel Terriac , Perrine Paul-Gilloteaux , Timothee Vignaud , Krista Mcnally et al.

Current Biology, 2013, 23 (1), pp.97. ⟨10.1016/j.cub.2012.12.015⟩

Article dans une revue hal-03304887v1

Centrosome amplification causes microcephaly

Véronique Marthiens , Maria Rujano , Carole Pennetier , Sarah Tessier , Perrine Paul-Gilloteaux et al.

Nature Cell Biology, 2013, 15 (7), pp.731 - 740. ⟨10.1038/ncb2746⟩

Article dans une revue hal-01712239v1

Sox10 and Itgb1 interaction in enteric neural crest cell migration

Florence Bondon Bondon Broders , Yuli Watanabe , Florence Broders-Bondon , Viviane Baral , Perrine Paul-Gilloteaux et al.

Developmental Biology, 2013, 379 (1), pp.92-106. ⟨10.1016/j.ydbio.2013.04.013⟩

Article dans une revue hal-03043892v1

Centrosome amplification causes microcephaly

Véronique Marthiens , Maria Rujano , Carole Pennetier , Sarah Tessier , Perrine Paul-Gilloteaux et al.

Nature Cell Biology, 2013, 15 (7), pp.731-740. ⟨10.1038/ncb2746⟩

Article dans une revue hal-03453019v1

Complete Lateral and Angular Diffusion and Protein-Protein Interaction Description of a Membrane Protein

Ignacio Casuso , Jean-Pierre Duneau , Mohamed Chami , Perrine Paul-Gilloteaux , Mohamed Husain et al.

Biophysical Journal, 2012, 102 (3), pp.413a-414a. ⟨10.1016/j.bpj.2011.11.2261⟩

Article dans une revue hal-02735811v1

The first World Cell Race.

Paolo Maiuri , Emmanuel Terriac , Perrine Paul-Gilloteaux , Timothée Vignaud , Krista Mcnally et al.

Current Biology, 2012, 22 (17), pp.R673-5. ⟨10.1016/j.cub.2012.07.052⟩

Article dans une revue hal-00744751v1
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Software for drift compensation, particle tracking and particle analysis of high-speed atomic force microscopy image series †

Mohamed Husain , Thomas Boudier , Perrine Paul-Gilloteaux , Ignacio Casuso , Simon Scheuring

Journal of Molecular Recognition, 2012, 25 ((5)), pp.292-8. ⟨10.1002/jmr.2187⟩

Article dans une revue istex inserm-01363229v1

N-cadherin and β1-integrins cooperate during the development of the enteric nervous system

Florence Bondon Bondon Broders , Florence Broders-Bondon , Perrine Paul-Gilloteaux , Camille Carlier , Glenn Radice et al.

Developmental Biology, 2012, 364 (2), pp.178-191. ⟨10.1016/j.ydbio.2012.02.001⟩

Article dans une revue hal-03043897v1
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Characterization of the motion of membrane proteins using high-speed atomic force microscopy

Ignacio Casuso , Jonathan Khao , Mohamed Chami , Perrine Paul-Gilloteaux , Mohamed Husain et al.

Nature Nanotechnology, 2012, 7, pp.525-529. ⟨10.1038/nnano.2012.109⟩

Article dans une revue inserm-01363192v1

ATAT1/MEC-17 acetyltransferase and HDAC6 deacetylase control a balance of acetylation of alpha-tubulin and cortactin and regulate MT1-MMP trafficking and breast tumor cell invasion

Antonio Castro-Castro , Carsten Janke , Guillaume Montagnac , Perrine Paul-Gilloteaux , Philippe Chavrier

European Journal of Cell Biology, 2012, 91 (11-12), pp.950 - 960. ⟨10.1016/j.ejcb.2012.07.001⟩

Article dans une revue istex hal-01712252v1

N-cadherin and β1-integrins cooperate during the development of the enteric nervous system

Florence Broders-Bondon , Perrine Paul-Gilloteaux , Camille Carlier , Glenn Radice , Sylvie Dufour

Developmental Biology, 2012, 364 (2), pp.178 - 191. ⟨10.1016/j.ydbio.2012.02.001⟩

Article dans une revue hal-01712255v1

Automatic noise quantification for confocal fluorescence microscopy images

Perrine Paul , Heiko Duessmann , Tytus Bernas , Heinrich Huber , Dimitrios Kalamatianos

Computerized Medical Imaging and Graphics, 2010, 34 (6), pp.426-434. ⟨10.1016/j.compmedimag.2010.04.001⟩

Article dans une revue istex hal-02735528v1
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ALISSA: an automated live-cell imaging system for signal transduction analyses

Jakub Wenus , Heiko Dussmann , Perrine Paul , Dimitrios Kalamatianos , Markus Rehm et al.

Biotechniques, 2009, 47 (6), pp.1033-1040. ⟨10.2144/000113247⟩

Article dans une revue hal-02735355v1
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A surface registration method for quantification of intraoperative brain deformations in image-guided neurosurgery.

Perrine Paul , Xavier Morandi , Pierre Jannin

IEEE Transactions on Information Technology in Biomedicine, 2009, 13 (6), pp.976-83. ⟨10.1109/TITB.2009.2025373⟩

Article dans une revue inserm-00546498v1
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Augmented virtuality based on stereoscopic reconstruction in multimodal image-guided neurosurgery: methods and performance evaluation.

Perrine Paul , Oliver J. Fleig , Pierre Jannin

IEEE Transactions on Medical Imaging, 2005, 24 (11), pp.1500-11. ⟨10.1109/TMI.2005.857029⟩

Article dans une revue inserm-00136469v1
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FBI DATA : une gestion FAIR et libre des données de bio-imagerie

Théo Barnouin , Emmanuel Faure , Perrine Gilloteaux , Jean-François Guillaume , Marc Mongy et al.

JRES 2024 - Journées réseaux de l'enseignement et de la recherche, Renater, Dec 2024, Rennes, France

Communication dans un congrès hal-04893882v1

How to describe bioimage data? Toward a community consensus, or how to create a metadata standard

Perrine Paul-Gilloteaux

Journée "Cycle de vie / Gestion des données de la biologie", Frédéric Brau, Apr 2024, Sophia Antipolis, France

Communication dans un congrès hal-04555129v1

Image analysis tools and applications for correlative microscopy

Perrine Paul-Gilloteaux

Séminaire de l'Institut de Génétique & Développement de Rennes, Apr 2023, Rennes, France

Communication dans un congrès hal-04217158v1

Development of correlation software for Correlative cryo light Soft X-Ray Tomography : example of 3d correlative cryo-structured illumination fluorescence and soft x-ray microscopy to ellucidate reovirus intracellular release pathway

Perrine Paul-Gilloteaux

INSTRUCT Soft X-ray Tomography workshop, Sep 2023, Didcot, United Kingdom

Communication dans un congrès hal-04217085v1

Linking and analyzing correlative datasets

Perrine Paul-Gilloteaux

ALL-HANDS NODES MEETINg&MORE, iNext DISCOVERY, Apr 2023, Heidelberg, Germany

Communication dans un congrès hal-04217201v1

Correlative microscopies : comulisglobe and news from ec-clem

Perrine Paul-Gilloteaux

France BioImaging CLEM day: What's new in multimodal imaging, Mar 2023, Paris, France

Communication dans un congrès hal-04217188v1

France Bio Imaging : setting up image data management solutions at the national level

Perrine Paul-Gilloteaux

BioImaging and the European Open Science Cloud, EOSC-Life, Apr 2023, Heidelberg, Germany

Communication dans un congrès hal-04217222v1

Correlative microscopies : image registration for clem and for deep learning What can bring error estimation ?

Perrine Paul-Gilloteaux

Colloque Français d'Intelligence Artificielle en Imagerie Biomédicale, Instituts 3IA MIAI, 3IA Cote d'Azur et PRAIRIE, Mar 2023, Paris, France

Communication dans un congrès hal-04217245v1

Image processing and analysis in clem : methods and pitfalls

Perrine Paul-Gilloteaux

Symposium on recent developments in cellular electron microscopy, AVIESAN ITMO MOLECULAR AND STRUCTURAL BASIS OF LIFE SCIENCES, Mar 2022, Paris, France

Communication dans un congrès hal-04217262v1

La tomographie par cohérence optique plein champ : un nouvel outil de microscopie optique dynamique pour l'analyse du système nerveux entérique

T Durand , L Laboudie , Perrine Paul-Gilloteaux , Isabelle Neveu , Philippe Naveilhan et al.

JFHOD, Mar 2022, Paris, France

Communication dans un congrès hal-03548856v1

Correlative microscopies: image registration for CLEM and for Deep Learning

Perrine Paul-Gilloteaux

Crick BioImage Analysis Symposium (CBIAS), Nov 2022, Londres (London), United Kingdom

Communication dans un congrès hal-04217278v1
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A Registration Error Estimation Framework for Correlative Imaging

Guillaume Potier , Frederic Lavancier , Stephan Kunne , Perrine Paul-Gilloteaux

2021 IEEE International Conference on Image Processing (ICIP), Sep 2021, Anchorage, United States. pp.131-135, ⟨10.1109/ICIP42928.2021.9506474⟩

Communication dans un congrès hal-03327500v1

EcClemv2: A new version of a flexible software for correlative workflows

Perrine Paul-Gilloteaux , Guillaume Potier , Frédéric Lavancier

COMULIS Conference, Sep 2021, Gothenburg, Sweden

Communication dans un congrès hal-04219791v1

High resolution correlative 3D imaging of the intracellular world under physiological conditions using the synergies of laser light and X-ray microscopes at cryogenic temperatures

Chidinma Okolo , Ilias Kounatidis , Perrine Paul-Gilloteaux , Ian Dobbie , Maria Harkiolaki

Microscience Microscopy Congress 2021 incorporating EMAG 2021, Jul 2021, Oxford, United Kingdom. ⟨10.22443/rms.mmc2021.71⟩

Communication dans un congrès hal-04219754v1

Méthodes et écueils du traitement des images issues de microscopie corrélative

Perrine Paul-Gilloteaux

6eme rencontre des microscopistes clermontois, Igred et Inrae, Oct 2021, Clermont-Ferrand, France

Communication dans un congrès hal-04214182v1

Correlative microscopies: quantitatively fusing information from 3D+ to 6D+ images

Perrine Paul-Gilloteaux

Microscience Microscopy Congress 2021 incorporating EMAG 2021, Jul 2021, Oxford, United Kingdom. ⟨10.22443/rms.mmc2021.69⟩

Communication dans un congrès hal-04219749v1

A FULL 3D CORRELATIVE IMAGING WORKFLOW: CHALLENGES IN COMPUTER VISION

Perrine Paul-Gilloteaux , Nina Vyas , Guillaume Potier , Stephan Kunne , Thomas M Fish et al.

IEEE ISBI 2021 (VIRTUAL)., Apr 2021, Nice, France

Communication dans un congrès hal-03258718v1

Quantification: extracting quantitative information from correlated multimodal dataset

Perrine Paul-Gilloteaux

IMAGE PROCESSING FOR CORRELATED AND MULTIMODAL IMAGING TECHNIQUES, VIB Training, Oct 2020, Ghent, Belgium

Communication dans un congrès hal-04214173v1

Leveraging Molecular and Cellular Fiducial Markers for Correlative Bio-Imaging

Chidinma Okolo , Ilias Kounatidis , Thomas Fish , Perrine Paul-Gilloteaux , Ian Dobbie et al.

Quantitative BioImaging, Jan 2020, Oxford, United Kingdom

Communication dans un congrès hal-04219534v1

French gastronomy and bio image analysis workflows

Perrine Paul-Gilloteaux

Virtual Analytical and Quantitative Microscopy, May 2020, Woods Hole, United States

Communication dans un congrès hal-02736886v1

Le dorica castra des images

Perrine Paul-Gilloteaux , Laurence Dubreil

Nuit Blanche des Chercheurs, Feb 2020, Nantes, France

Communication dans un congrès hal-02509532v1

Cross-modal registration using point clouds and graph-matching in the context of correlative microscopies

Stephan Kunne , Guillaume Potier , Jean Merot , Perrine Paul-Gilloteaux

iTWIST : international Traveling Workshop on Interactions between low-complexity data models and Sensing Techniques, Dec 2020, Nantes, France

Communication dans un congrès hal-03039114v1

Introduction to Correlation Software in CLEM

Perrine Paul-Gilloteaux

Correlated Multimodal Imaging Conference, Nov 2019, Vienne, Austria

Communication dans un congrès hal-02744299v1

NEUBIAS: BIOIMAGE ANALYSTS NETWORK TO SUPPORT LIFE SCIENTISTS THROUGH TRAINING, ONLINE TOOLS REPOSITORIES AND BENCHMARKING DEPLOYMENT FOR BIOIMAGE ANALYSIS WORKFLOWS

Kota Miura , Sebastian Munck , Florian Levet , Gabriel Martins , Fabrice Cordelières et al.

Focus on Microscopy, Apr 2019, Londres, United Kingdom

Communication dans un congrès hal-02746229v1

Les bases de données images: limitations et aspirations

Perrine Paul-Gilloteaux

Journée partenaire industriel GDR IMABIO, Jun 2019, Paris, France

Communication dans un congrès hal-02745126v1

Interdisciplinarity in a (still short) carreer: living and contributing to the creation of a new research field in biomedical image informatics.

Perrine Paul-Gilloteaux

Opening conference of Angers Summer schools, Jun 2019, Angers, France

Communication dans un congrès hal-02745462v1

An in Vitro and in Silico Validation Study for PC MRI and Derived Bio‐markers

Marco Castagna , Sébastien Levilly , Perrine Paul-Gilloteaux , Félicien Bonnefoy , Jérôme Idier et al.

31st Society for Magnetic Resonance Angiography conference (SMRA 2019), Aug 2019, Nantes, France

Communication dans un congrès hal-03130185v1

Introduction to transformations and registrations

Perrine Paul-Gilloteaux , Martin Schorb

High-Accuracy CLEM: Applications at Room Temperature and in cryo, Apr 2019, Heidelberg, Germany

Communication dans un congrès hal-02746707v1

Advanced Image analysis

Perrine Paul-Gilloteaux

Analytical & Quantitative Light Microscopy, May 2019, Woods Hole, United States

Communication dans un congrès hal-02736802v1

Linking cell scales: methods and software for correlative imaging workflows

Perrine Paul-Gilloteaux

La microscopie électronique pour les sciences du vivant. Journées Scientifiques de l'Université de Nantes, Jun 2019, Nantes, France

Communication dans un congrès hal-02745260v1

RECALAGE EN MICROSCOPIES CORRÉLATIVES POUR LA CARACTÉRISATION PHYSIOPATHOLOGIQUE DE LA VALVULOPATHIE

Perrine Paul-Gilloteaux

16eme colloque de la société Française des Microscopies, Jul 2019, Poitiers, France

Communication dans un congrès hal-02745967v1

Automatic Registration of Correlative Microscopies with Error Assessment and Applications for the Optimization of Multimodal Acquisitions

Perrine Paul-Gilloteaux

SCANDEM 2019, Jun 2019, Gothenburg, Sweden

Communication dans un congrès hal-02736339v1

Bio-Imagerie: mathématiques et informatique pour la compréhension du vivant

Perrine Paul-Gilloteaux

Immersion Science, Mar 2018, Ile Tudy, France

Communication dans un congrès hal-02736939v1

Computer vision methods for multidimensional correlative microscopies

Perrine Paul-Gilloteaux

Journées communes des GdR MIA et ImaBio "Microscopie et traitement d'image", Nov 2018, Strasbourg, France

Communication dans un congrès hal-02736491v1

Automatic registration for multidimensional correlative microscopies with error assessment and detections of deformations

Perrine Paul-Gilloteaux

International Microscopy Congress, Sep 2018, Sydney, Australia

Communication dans un congrès hal-02736564v1

Computer vision methods for multidimensional correlative microscopies: optimizing acquisitions using maths

Perrine Paul-Gilloteaux

Colloqium: Future Microscopy and Analysis, Nov 2018, Ghent, Belgium

Communication dans un congrès hal-02736454v1

Constructing workflows in Bio Image Analysis

Perrine Paul-Gilloteaux

Analytical & Quantitative Light Microscopy, May 2018, Woods Hole, United States

Communication dans un congrès hal-02736843v1

Bio-image DATA in Life Sciences Research Infrastructures. From SCRATCH to intelligent integrated solutions

Perrine Paul-Gilloteaux

Storage Day, Jan 2018, Paris, France

Communication dans un congrès hal-02737009v1

COMULIS, a new network to bridge (pre) clinical imaging and correlative Light Electron microscopy. Focus on multidimensional registration software

Perrine Paul-Gilloteaux

ASCB-EMBO 2018, Dec 2018, San Diego, United States

Communication dans un congrès hal-02736408v1

Besoins en bio-informatique liés àl’activité de l’infrastructure nationale France Bio Imaging

Perrine Paul-Gilloteaux

Assemblée générale de l'INBS Institut Français de Bioinformatique, Jan 2017, paris, France

Communication dans un congrès hal-02747035v1

Le recalage d'image sous ICY

Perrine Paul-Gilloteaux , Xavier Heiligenstein

Journée Thématique conjointe sur le repositionnement et la relocalisation/recalage, Nov 2017, Orléans, France

Communication dans un congrès hal-02746899v1

Challenges in image correlation for CLEM (and partial solutions)

Perrine Paul-Gilloteaux

Crick Electron Microscopy Opening Symposium, Jul 2017, Londres, United Kingdom

Communication dans un congrès hal-02747126v1
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Filtrage spatio-temporel en IRM de flux sanguin 4D

Sébastien Levilly , Jérôme Idier , Félicien Bonnefoy , David Le Touzé , Perrine Paul-Gilloteaux et al.

XXVIème colloque GRETSI sur le Traitement du Signal et des Images, Sep 2017, Juan-Les-Pins, France

Communication dans un congrès hal-01720339v1

Introduction to transformations and registrations

Perrine Paul-Gilloteaux , Martin Schorb

High-Accuracy CLEM: Applications at Room Temperature and in cryo, Dec 2017, Heidelberg, Germany

Communication dans un congrès hal-02746508v1

Flexible multidimensional registration software for correlative microscopies with refined accuracy mapping: eC-CLEM easy Cell Correlative Light to Electron Microscopy

Perrine Paul-Gilloteaux

Symposium and Workshop on correlative light, electron, and X-ray microscopy, Mar 2017, Harwell, United Kingdom

Communication dans un congrès hal-02747152v1

Gestion et analyse d’images à moyen débit : exemple en microscopie confocale et sur lames virtuelles

Perrine Paul-Gilloteaux

Quand la bio-imagerie rencontre la bio-informatique : vers une intégration des données hétérogènes. Journée d'animation Biogenouest, Oct 2017, Rennes, France

Communication dans un congrès hal-02745560v1

Cycle de vie des images en microscopie : de l’acquisition au partage des données

Perrine Paul-Gilloteaux

La diversité tumorale à travers les plateformes technologiques franciliennes, Jan 2016, Paris, France

Communication dans un congrès hal-02746957v1

Multiscale and multidimensional Image registration for CLEM : techniques and pitfalls

Perrine Paul-Gilloteaux

High-Accuracy Correlated Light and Electron Microscopy: Applications at Room Temperature and in Cryo, Apr 2016, Heildelberg, Germany

Communication dans un congrès hal-02746687v1

Ec-CLEM: an open source plugin for CLEM image and volume registration

Perrine Paul-Gilloteaux

EMBL Workshop: From 3D Light to 3D Electron Microscopy, Mar 2016, Heidelberg, Germany

Communication dans un congrès hal-02746474v1

Le numérique dans les biotechnologies: exemple de la bio imagerie

Perrine Paul-Gilloteaux

TechnoConférence Pole Image et Réseau #17, Jun 2016, Nantes, France

Communication dans un congrès hal-02746143v1

Methodes de traitement et analyse d’images comme aide à la quantification des biomarqueurs en imagerie: de l’in vitro à la clinique

Perrine Paul-Gilloteaux

Ateliers du DHU2020, Jun 2015, Nantes, France

Communication dans un congrès hal-02908867v1

Gestion du cycle de vie des images en microscopie pour la biologie: Extraction de connaissances à partir d’une base de données images

Perrine Paul-Gilloteaux

Séminaire de l'INRA OPEN DATA, Dec 2015, Montpellier, France

Communication dans un congrès hal-02908891v1

Développement et déploiement d’une base de données image commune : bilan

Perrine Paul-Gilloteaux , Corinne Laplace-Builhé

Imagerie et cancers : optique et imagerie multiphotonique, Sep 2014, Paris, France

Communication dans un congrès hal-02746819v1

Robust parametric stabilization of moving cells with intensity correction in light microscopy image sequences

Solene Ozere , Patrick Bouthemy , Fabien Spindler , Perrine Paul-Gilloteaux , Charles Kervrann

ISBI - IEEE International Symposium on Biomedical Imaging, Apr 2013, San-Francisco, United States. pp.468-471, ⟨10.1109/ISBI.2013.6556513⟩

Communication dans un congrès hal-00931371v1

Correlation and variational approaches for motion and diffusion estimation in fluorescence imaging

Denis Fortun , Chen Chen , Perrine Paul-Gilloteaux , François Waharte , Jean Salamero et al.

EUSIPCO 2013 - European Signal Processing Conference, Sep 2013, Marrakech, Morocco. pp.1-5

Communication dans un congrès hal-00931408v1

Aggregation of patch-based estimations for illumination-invariant optical flow in live cell imaging

Denis Fortun , Patrick Bouthemy , Perrine Paul-Gilloteaux , Charles Kervrann

ISBI - IEEE International Symposium on Biomedical Imaging, Apr 2013, San-Francisco, United States. pp.660-663, ⟨10.1109/ISBI.2013.6556561⟩

Communication dans un congrès hal-00931377v1

Correlation and variational approaches for motion and diffusion estimation in fluorescence imaging

Denis Fortun , Chen Chen , Perrine Paul-Gilloteaux , François Waharte , Jean Salamero et al.

European Light Microscopy Initiative (ELMI'13), May 2013, Arcachon, France

Communication dans un congrès hal-00931593v1

Computational modeling of the consequences of embryonic neurogenesis disorders

Perrine Paul-Gilloteaux , Renata Basto , Veronique Marthiens

Molecular Biology of The Cell. ASCB, 2013, Nouvelle-Orleans, United States. pp.3775-3775, ⟨10.1091/mbc.E13-10-0584⟩

Communication dans un congrès hal-02908946v1

Image Data Base on a microscopy facility: Presentation and use for remote collaborations

Perrine Paul-Gilloteaux

Nouvelles méthodologies en imagerie du vivant, Dec 2012, Lyon, France

Communication dans un congrès hal-02746303v1

Developpement des methodes de correlation d images pour l analyse de la mobilite moleculaire dans un systeme biologique complexe spatialement et temporellement

C. Chen , P. Paul-Gilloteaux , T. Vignaud , J. Salamero , F. Waharte

OPTDIAG, May 2012, Paris, France

Communication dans un congrès hal-02746408v1

Study of the 3D repartition of vesicles normalized by the distance to the cell periphery

Perrine Paul-Gilloteaux , Elisabetta Padovan , Claire L Hivroz

Focus On Microscopy, Apr 2011, Konstanz, Germany

Communication dans un congrès hal-02746059v1

Automatic quality assessment for fluorescence microscopy images

Perrine Paul , Dimitrios Kalamatianos , Heiko Duessmann , Heinrich Huber

2008 8th IEEE International Conference on Bioinformatics and BioEngineering (BIBE), Oct 2008, Athens, France. pp.1-6, ⟨10.1109/BIBE.2008.4696665⟩

Communication dans un congrès hal-02735370v1
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Image Guidance in neurosurgical procedures, the "VISAGES" point of view

Christian Barillot , Pierrick Coupé , Bernard Gibaud , Pierre Hellier , Pierre Jannin et al.

4th IEEE International Symposium on Biomedical Imaging: From Nano to Macro, Apr 2007, Arlington, United States. pp.1056-1059, ⟨10.1109/ISBI.2007.357037⟩

Communication dans un congrès inserm-00152147v1
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Knowledge modeling in image guided neurosurgery: application in understanding intra-operative brain shift

Perrine Paul , Xavier Morandi , Pierre Jannin , Julien Cohen-Adad

SPIE Medical Imaging 2006: Visualization, Image-Guided Procedures and Display, Mar 2006, San Diego, United States. ⟨10.1117/12.655752⟩

Communication dans un congrès inserm-00147527v1
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A surface registration approach for video-based analysis of intraoperative brain surface deformations

Perrine Paul , Aurélie Quere , Élise Arnaud , Xavier Morandi , Pierre Jannin

Oct 2006, pp.0

Communication dans un congrès inserm-00109455v1
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Virtualité augmentée en neurochirurgie guidée par l'image

Perrine Paul , Oliver J. Fleig , Xavier Morandi , Pierre Jannin

2005, pp.99-104

Communication dans un congrès inserm-00138138v1

Performance Evaluation of a Stereoscopic Based 3D Surface Localiser for Image-Guided Neurosurgery

Perrine Paul , Oliver J. Fleig , Sabine Tranchant , Pierre Jannin

MICCAI, Sep 2004, Saint-Malo, France. pp.510-517, ⟨10.1007/978-3-540-30136-3_63⟩

Communication dans un congrès hal-02735433v1
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The ELIXIR research software ecosystem

Hans-Ioan Ienasescu , Salvador Capella-Gutierrez , Frederik Coppens , José Mª Fernandez , Alban Gaignard et al.

24th annual Bioinformatics Open Source Conference (BOSC 2023), Jul 2023, Lyon, France. , ⟨10.7490/f1000research.1119595.1⟩

Poster de conférence hal-05206335v1

EDAM-bioimaging : The ontology of bioimage informatics operations, topics, data, and formats (update 2019)

Matúš Kalaš , Laure Plantard , Nataša Sladoje , Joakim Lindblad , Moritz Alexander Kirschmann et al.

3rd NEUBIAS Bioimage Analysis Community Conference 2019, Jun 2020, Luxembourg, Luxembourg

Poster de conférence hal-02910949v1

EDAM-bioimaging : The ontology of bioimage informatics operations, topics, data, and formats (update 2020)

Matúš Kalaš , Laure Plantard , Nataša Sladoje , Joakim Lindblad , Moritz Alexander Kirschmann et al.

ELIXIR All Hands 2020, Jun 2020, Virtual, United Kingdom

Poster de conférence hal-02910948v1
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EDAM-bioimaging : The ontology of bioimage informatics operations, topics, data, and formats

Matúš Kalaš , Laure Plantard , Nataša Sladoje , Joakim Lindblad , Moritz Alexander Kirschmann et al.

NEUBIAS, Feb 2019, Luxembourg, Luxembourg. ⟨10.7490/f1000research.1115257.1⟩

Poster de conférence hal-02267597v1
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Analyse d’un échantillon en 3 dimensions par une technique de Serial Block Face Imaging amovible

Marine Malloci , Stéphanie Blandin , Paul Dorval , Philippe Hulin , Pierre-Alix Dancer et al.

AFH 2019, Jun 2019, Strasbourg, France

Poster de conférence hal-02267585v1
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Wall Shear Stress Quantification in the context of 4D Flow MRI Simulation on Carotids

Levilly Sébastien , Jérôme Idier , Félicien Bonnefoy , David Le Touzé , Perrine Paul-Gilloteaux et al.

Society for Magnetic Resonance Angiography conference, 31st Annual International Conference, Aug 2019, Nantes, France

Poster de conférence hal-03466557v1
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Registration and error estimation in correlated multimodal imaging

Guillaume Potier , Stephan Kunne , Frédéric Lavancier , Perrine Paul-Gilloteaux

Correlated Multimodal Imaging Conference, Nov 2019, Vienna, Austria

Poster de conférence hal-02744368v1
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Spatio-temporal filtering of blood flow in 4D Phase-Contrast MRI

Sébastien Levilly , Jérôme Idier , David Le Touzé , Perrine Paul-Gilloteaux , Félicien Bonnefoy et al.

Society for Magnetic Resonance Angiography, 29th Annual International Conference (SMRA 2017), Oct 2017, Stellenbosch, South Africa. 61, pp.3163 - 3178, 2015

Poster de conférence hal-01720378v1

Computer-assisted analysis of multimodal image data—perspectives and conclusion

Nataša Sladoje , Joakim Lindblad , Perrine Paul-Gilloteaux

Imaging Modalities for Biological and Preclinical Research: A Compendium, Volume 2, IOP Publishing, 2021, ⟨10.1088/978-0-7503-3747-2ch30⟩

Chapitre d'ouvrage hal-03232548v1
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Resolving the Process of Clathrin Mediated Endocytosis Using Correlative Light and Electron Microscopy (CLEM)

Martin Schorb , Perrine Paul-Gilloteaux

Kota Miura; Nataša Sladoje. Bioimage Data Analysis Workflows, Springer, pp.143-166, 2020, Learning Materials in Biosciences, 978-3-030-22385-4. ⟨10.1007/978-3-030-22386-1_6⟩

Chapitre d'ouvrage hal-02735825v1
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Workflows and Components of Bioimage Analysis

Kota Miura , Perrine Paul-Gilloteaux , Sébastien Tosi , Julien Colombelli

Bioimage Data Analysis Workflows. Learning Materials in Biosciences. Springer, Cham, pp.1-7, 2020, ⟨10.1007/978-3-030-22386-1_1⟩

Chapitre d'ouvrage hal-02735486v1

Correlating Data from Imaging Modalities

Perrine Paul-Gilloteaux , Martin Schorb

Correlative Imaging: Focusing on the Future, 1, Wiley, 2019, ⟨10.1002/9781119086420.ch11⟩

Chapitre d'ouvrage hal-02735744v1

A Biologist-Friendly Method to Analyze Cross-Correlation Between Protrusion Dynamics and Membrane Recruitment of Actin Regulators

Perrine Paul-Gilloteaux , François Waharte , Manish Kumar Singh , Maria Carla Parrini

Methods Mol Biol, pp.279-289, 2018

Chapitre d'ouvrage hal-02267604v1
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Quantitative Evaluation of Multicellular Movements in Drosophila Embryo

Perrine Paul-Gilloteaux , Sébastien Tosi

Kota Miura. Bioimage Data Analysis, Wiley-VCH, 2016, 978-3-527-80092-6

Chapitre d'ouvrage hal-02910999v1
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Bioimage Analysis Tools

Kota Miura , Sébastien Tosi , Christoph Möhl , Chong Zhang , Perrine Paul-Gilloteaux et al.

Kota Miura. Bioimage Data Analysis, Wiley-VCH, 2016, 978-3-527-80092-6

Chapitre d'ouvrage hal-02910986v1
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Cell Polarity: Focal Adhesion and Actin Dynamics in Migrating Cells

Perrine Paul-Gilloteaux , Christoph Möhl

Kota Miura. Bioimage Data Analysis, Wiley-VCH, pp.198-218, 2016, 978-3-527-80092-6

Chapitre d'ouvrage hal-02910995v1

Quantitative analysis of flagellar proteins in Drosophila sperm tails

Teresa Mendes Maia , Perrine Paul-Gilloteaux , Renata Basto

Methods in Cilia & Flagella, 127, Elsevier, pp.263-278, 2015, Methods in Cell Biology, ⟨10.1016/bs.mcb.2015.01.003⟩

Chapitre d'ouvrage hal-03453032v1

Microscopy control system and method

Heinrich Huber , Heiko Dussmann , Perrine Paul-Gilloteaux , Jakub Wenus , Dimitrios Kalamatianos et al.

United States, Patent n° : US 2010/0251438 A1. 2010, https://patentimages.storage.googleapis.com/bb/3d/c1/00174666d137a7/US20100251438A1.pdf

Brevet hal-02735674v1

Tripartite ER-Mitochondria-Lipid Droplets contact sites control adipocyte metabolic flexibility

Marie Palard , Gilliane Chadeuf , Maxime Carpentier , Samuel Frey , Mikael Croyal et al.

2025

Pré-publication, Document de travail hal-05376862v1

Bio-Image Informatics Index BIII: A unique database of image analysis tools and workflows for and by the bioimaging community

Chong Zhang , Alban Gaignard , Matus Kalas , Florian Levet , Felipe Delestro et al.

2024

Pré-publication, Document de travail hal-04453549v1

Label-free imaging of large samples: 3D rendering and morphological analysis within histological workflows using serial block face imaging

Marine Malloci , Perrine de Villemagne , Paul Dorval , Magalie Feyeux , Stéphanie Blandin et al.

2022

Pré-publication, Document de travail hal-03745095v1
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QUAREP‐LiMi: A community‐driven initiative to establish guidelines for quality assessment and reproducibility for instruments and images in light microscopy

Glyn Nelson , Ulrike Boehm , Steve Bagley , Peter Bajcsy , Johanna Bischof et al.

2023

Pré-publication, Document de travail hal-03120748v1

Kinetics of Plasmodium midgut invasion in Anopheles mosquitoes

Gloria Volohonsky , Perrine Paul-Gilloteaux , Jitka Štáfková , Julien Soichot , Jean Salamero et al.

2020

Pré-publication, Document de travail hal-02509933v1

Correlative cryo-structured illumination fluorescence microscopy and soft X-ray tomography elucidates reovirus intracellular release pathway

Ilias Kounatidis , Megan L Stanifer , Michael A Phililips , Perrine Paul-Gilloteaux , Xavier Heiligenstein et al.

2020

Pré-publication, Document de travail hal-02509948v1
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BIAFLOWS: A collaborative framework to benchmark bioimage analysis workflows

Ulysse Rubens° , Romain Mormont° , Volker Baecker , Gino Michiels , Lassi Paavolainen et al.

2019

Pré-publication, Document de travail hal-02267577v1

Multiview contrastive learning for myelodysplastic syndrome screening : adding deep image representation to blood parameters

Cédric de Almeida Braga , Maxence Bauvais , Samy Benhouhou , Alice Garnier , Pierre Peterlin et al.

Computer-Aided Diagnosis, Feb 2025, San Diego, France. Journal of Medical Imaging, 13407, SPIE, pp.109, 2025, ⟨10.1117/12.3047178⟩

Proceedings/Recueil des communications hal-05070292v1