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Pedro H. Oliveira

Lab Head / Research Director
88%
Open access
16
Documents
Current affiliations
  • 55375
  • 21582
  • 1096787
Researcher identifiers
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Presentation

Research domains


Skills

Genomics Computational Biology Multiscale Biology Biotechnology Epigenetics

Publications

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The defensome of complex bacterial communities

Angelina Beavogui , Auriane Lacroix , Nicolas Wiart , Julie Poulain , Tom O Delmont
Nature Communications, 2023, 15, pp.2146. ⟨10.1101/2023.08.12.553040⟩
Journal articles hal-04406189v2
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Diversity of the Pacific Ocean coral reef microbiome

Pierre Galand , Hans-Joachim Ruscheweyh , Guillem Salazar , Corentin Hochart , Nicolas Henry
Nature Communications, 2023, 14 (1), pp.3039. ⟨10.1038/s41467-023-38500-x⟩
Journal articles hal-04176291v1
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Integrative omics framework for characterization of coral reef ecosystems from the Tara Pacific expedition

Caroline Belser , Julie Poulain , Karine Labadie , Frederick Gavory , Adriana Alberti
Scientific Data , 2023, 10 (1), pp.326. ⟨10.1038/s41597-023-02204-0⟩
Journal articles hal-04176297v1
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Complete Genome Sequence of Tepidibacter sp. Strain 8C15b, Isolated from Bank Sediments of Haiphong Bay, Vietnam

Stéphanie Fouteau , Vuong Bui Van , Zoé Rouy , Mélanie Beraud , Corinne Cruaud
Microbiology Resource Announcements, 2022, 11 (7), ⟨10.1128/mra.00132-22⟩
Journal articles hal-03778996v1
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Bacterial epigenomics: coming of age

Pedro H. Oliveira
mSystems, 2021, 6 (4), pp.e00747-21. ⟨10.1128/mSystems.00747-21⟩
Journal articles hal-04288989v1
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Conserved DNA Methyltransferases: A Window into Fundamental Mechanisms of Epigenetic Regulation in Bacteria

Pedro H. Oliveira , Gang Fang
Trends in Microbiology, 2021, 29 (1), pp.28-40. ⟨10.1016/j.tim.2020.04.007⟩
Journal articles hal-04325259v1
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Epigenomic characterization of Clostridioides difficile finds a conserved DNA methyltransferase that mediates sporulation and pathogenesis

Pedro Oliveira , John Ribis , Elizabeth Garrett , Dominika Trzilova , Alex Kim
Nature Microbiology, 2020, 5 (1), pp.166-180. ⟨10.1038/s41564-019-0613-4⟩
Journal articles hal-02988691v1
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The chromosomal organization of horizontal gene transfer in bacteria

Pedro H. Oliveira , Marie Touchon , Jean Cury , Eduardo P C Rocha
Nature Communications, 2017, 8 (1), pp.841. ⟨10.1038/s41467-017-00808-w⟩
Journal articles hal-04325283v1
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Regulation of genetic flux between bacteria by restriction–modification systems

Pedro H. Oliveira , Marie Touchon , Eduardo P. C. Rocha
Proceedings of the National Academy of Sciences of the United States of America, 2016, 113 (20), pp.5658 - 5663. ⟨10.1073/pnas.1603257113⟩
Journal articles pasteur-01374969v1
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The interplay of restriction-modification systems with mobile genetic elements and their prokaryotic hosts

P. H. Oliveira , M. Touchon , E. P. C. Rocha
Nucleic Acids Research, 2014, 42 (16), pp.10618 - 10631. ⟨10.1093/nar/gku734⟩
Journal articles pasteur-01374960v1

The anti-phage defensome of ocean, soil, and human gut microbiomes

Pedro H. Oliveira
Microbiome Meeting, Cold Spring Harbor, Oct 2022, New York, NY, United States
Conference papers hal-04406266v1
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European mink (Mustela lutreola) reference genome and population genomics

Alice Mouton , Christine Fournier-Chambrillon , Pascal Fournier , Jakub Skorupski , Przemysław Śmietana
34th European Mustelid Colloquium, Sep 2022, Online conference, France
Conference papers hal-03787589v1

Conserved DNA methyltransferases as keystones of epigenetic regulation in Bacteria

Pedro H. Oliveira
26th Boston Bacterial Meeting, Jul 2020, Boston (MA), United States
Conference papers hal-04406307v1
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Diversity, dynamics and evolution of bacterial epigenomes

Pedro H. Oliveira
Life Sciences [q-bio]. University of Paris Saclay, 2022
Habilitation à diriger des recherches tel-04562706v1