CV HAL - Philippe Ruiz

Metabolization of Flavan‐3‐ol Oligomers by Eggerthella lenta , a Human Gut Bacterium

Ruben Halifa , Claire Dufour , Agnes Cornu , Philippe Ruiz , Jeanne Danon et al.

Molecular Nutrition and Food Research, 2026, 70 (19), ⟨10.1002/mnfr.70615⟩

Article dans une revue hal-05768681v1

Evaluation of esophageal tubing and buccal swabbing versus rumen cannula to characterize ruminal microbiota in cows fed contrasting diets

Lysiane Dunière , Philippe Ruiz , Frédérique Chaucheyras-Durand , Mathieu Silberberg , Anne Boudon et al.

Scientific Reports, 2025, 15 (1), pp.34582. ⟨10.1038/s41598-025-18063-1⟩

Article dans une revue hal-05310805v1

Transcriptomic analysis of the interactions between Fibrobacter succinogenes S85, Selenomonas ruminantium PC18 and a live yeast strain used as a ruminant feed additive

Pauline Desvignes , Philippe Ruiz , Laurie Guillot , Jeanne Danon , Alexandra Durand et al.

BMC Genomics, 2025, 26 (1), pp.721. ⟨10.1186/s12864-025-11894-2⟩

Article dans une revue hal-05212728v1

The Genotoul-Bioinfo platform

Florent Blaise , Philippe Bordron , Patrice Dehais , Vincent Dominguez , Nicolas Enjalbert-Courrech et al.

JOBIM, Jun 2026, Strasbourg, France. 2026

Poster de conférence hal-05683773v1

Microbial transfers in dairy systems under changing climate and farming practices

Sébastien Theil , Mahendra Mariadassou , Philippe Ruiz , Guillaume Kon Kam King , Matthieu Bouchon et al.

JOBIM 20025, Jul 2025, Bordeaux, France

Poster de conférence hal-05168268v1

Microbial transfers in dairy systems under changing climate and farming practices

Sébastien Theil , Mahendra Mariadassou , Philippe Ruiz , Guillaume Kon Kam King , Matthieu Bouchon et al.

FROGS Days, Dec 2025, Toulouse, France

Poster de conférence hal-05462857v1

The Genotoul-Bioinfo platform

Florent Blaise , Philippe Bordron , Patrice Dehais , Vincent Dominguez , Christine Gaspin et al.

JOBIM2025, Jul 2025, Bordeaux, France

Poster de conférence hal-05163782v1

FAIRing Research Data to Live @AuBi Platform

Francis Ogereau , Mateo Hiriart , Pierre Marin , Bérénice Batut , Cléa Siguret et al.

JOBIM, Jun 2024, Toulouse (FR), France

Poster de conférence hal-04643973v1

Escobase and AcR: Escherichia coli databases of genomes and acid resistance genes from isolates from cattle farms

Lucile Martin , Philippe Ruiz , Sabine Leroy , Sapountzis Panagiotis

2025

Pré-publication, Document de travail hal-04990599v1

metagWGS

Jean Mainguy , Maïna Vienne , Joanna Fourquet , Pierre Martin , Vincent Darbot et al.

2024, ⟨swh:1:dir:4ac81dae5fd868ea7969796dea30de32c76ff170;origin=https://hal.archives-ouvertes.fr/hal-04694918;visit=swh:1:snp:2c5d39d733f88b185b285b21578d288c1f9d9ffa;anchor=swh:1:rel:a55bc4a3ca3ff027a6ded3b1de3fb7bcff1f0bc7;path=/⟩

Logiciel hal-04694918v1

Packages R pour contrôler son travail et ainsi mieux optimiser, réutiliser et communiquer autour de ses analyses

Cédric Midoux , Philippe Ruiz

Journées du PEPI IBIS, PEPI IBIS, Sep 2023, Paris, France

Communication dans un congrès hal-04229825v1

TANDEM : Flux microbiens au sein d’une chaîne alimentaire

Anne-Laure Abraham , Juliette Bloor , Céline Delbès , Annick Bernalier Donadille , Matthieu Bouchon et al.

Journées Portes Ouvertes UMRF, Jun 2023, Aurillac, France

Communication dans un congrès hal-04221497v1

Philippe Ruiz

Compétences

Publications

Publications

Metabolization of Flavan‐3‐ol Oligomers by Eggerthella lenta , a Human Gut Bacterium

Evaluation of esophageal tubing and buccal swabbing versus rumen cannula to characterize ruminal microbiota in cows fed contrasting diets

Transcriptomic analysis of the interactions between Fibrobacter succinogenes S85, Selenomonas ruminantium PC18 and a live yeast strain used as a ruminant feed additive

The Genotoul-Bioinfo platform

Microbial transfers in dairy systems under changing climate and farming practices

Microbial transfers in dairy systems under changing climate and farming practices

The Genotoul-Bioinfo platform

FAIRing Research Data to Live @AuBi Platform

Escobase and AcR: Escherichia coli databases of genomes and acid resistance genes from isolates from cattle farms

metagWGS

Packages R pour contrôler son travail et ainsi mieux optimiser, réutiliser et communiquer autour de ses analyses

TANDEM : Flux microbiens au sein d’une chaîne alimentaire