Pierre Gladieux

122
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Publications

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Extensive immune receptor repertoire diversity in disease-resistant rice landraces

Pierre Gladieux , Cock van Oosterhout , Sebastian Fairhead , Agathe Jouet , Diana Ortiz et al.
Current Biology, 2024, 34, pp.3983-3995. ⟨10.1016/j.cub.2024.07.061⟩
Article dans une revue hal-04694233 v1
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Pyricularia oryzae : Lab star and field scourge

Maël Baudin , Marie Le Naour--Vernet , Pierre Gladieux , Didier Tharreau , Marc‐henri Lebrun et al.
Molecular Plant Pathology, 2024, 25 (4), pp.e13449. ⟨10.1111/mpp.13449⟩
Article dans une revue hal-04554386 v1
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The structural landscape and diversity of Pyricularia oryzae MAX effectors revisited

Mounia Lahfa , Philippe Barthe , Karine de Guillen , Stella Cesari , Mouna Raji et al.
PLoS Pathogens, 2024, 20 (5), pp.e1012176. ⟨10.1371/journal.ppat.1012176⟩
Article dans une revue hal-04594277 v1
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Deep population structure linked to host vernalization requirement in the barley net blotch fungal pathogen

Julie Ramírez Martínez , Sonia Guillou , Stéphanie Le Prieur , Pauline Di Vittorio , Florelle Bonal et al.
Microbial Genomics, 2024, 10 (5), pp.001241. ⟨10.1099/mgen.0.001241⟩
Article dans une revue hal-04572543 v1
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Emergence and spread of the barley net blotch pathogen coincided with crop domestication and cultivation history

Demetris Taliadoros , Alice Feurtey , Nathan Wyatt , Benoit Barrès , Pierre Gladieux et al.
PLoS Genetics, 2024, 20 (1), pp.e1010884. ⟨10.1371/journal.pgen.1010884⟩
Article dans une revue hal-04532805 v1
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Draft genome sequences of <i>Neurospora crassa</i> clade B, isolated from burned <i>Cytisus</i> sp. plants in France

Lucas Bonometti , Fabien de Bellis , Sandrine Cros-Arteil , Elise Guéret , Pierre Gladieux
Microbiology Resource Announcements, 2023, 12 (12), pp.e00627-23. ⟨10.1128/mra.00627-23⟩
Article dans une revue hal-04456049 v1
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Stepwise recombination suppression around the mating-type locus in an ascomycete fungus with self-fertile spores

Nina Vittorelli , Ricardo Rodríguez de La Vega , Alodie Snirc , Emilie Levert , Valérie Gautier et al.
PLoS Genetics, 2023, 19 (2), pp.e1010347. ⟨10.1371/journal.pgen.1010347⟩
Article dans une revue hal-04022779 v1
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Adaptive evolution in virulence effectors of the rice blast fungus Pyricularia oryzae

Marie Le Naour-Vernet , Florian Charriat , Jérôme Gracy , Sandrine Cros-Arteil , Sébastien Ravel et al.
PLoS Pathogens, 2023, 19 (9), pp.e1011294. ⟨10.1371/journal.ppat.1011294⟩
Article dans une revue hal-04234581 v1
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Genome-scale phylogeny and comparative genomics of the fungal order Sordariales

Noah Hensen , Lucas Bonometti , Ivar Westerberg , Ioana Onut Brännström , Sonia Guillou et al.
Molecular Phylogenetics and Evolution, 2023, 189, pp.107938. ⟨10.1016/j.ympev.2023.107938⟩
Article dans une revue hal-04709225 v1

Means, motive and opportunity for biological invasions: Genetic introgression in a fungal pathogen

Flávia Rogério , Cock van Oosterhout , Maisa Ciampi‐guillardi , Fernando Henrique Correr , Guilherme Kenichi Hosaka et al.
Molecular Ecology, 2023, 32 (10), pp.2428-2442. ⟨10.1111/mec.16366⟩
Article dans une revue hal-03583768 v1

Evolution of the rice blast pathogen on spatially structured rice landraces maintains multiple generalist fungal lineages

Sajid Ali , Pierre Gladieux , Sebastien Ravel , Henri Adreit , Isabelle Meusnier et al.
Molecular Ecology, 2023, 32 (10), pp.2519-2533. ⟨10.1111/mec.16927⟩
Article dans une revue hal-04084407 v1
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Hybridizations between formae speciales of Venturia inaequalis pave the way for a new biocontrol strategy to manage fungal plant pathogens

Valérie Caffier , Jason Shiller , Marie-Noëlle Bellanger , Jerome Collemare , Pascale Expert et al.
Phytopathology, 2022, 112 (7), pp.1401-1405. ⟨10.1094/phyto-05-21-0222-sc⟩
Article dans une revue hal-03560861 v1
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Maintenance of divergent lineages of the Rice Blast Fungus Pyricularia oryzae through niche separation, loss of sex and post-mating genetic incompatibilities

Maud Thierry , Florian Charriat , Joëlle Milazzo , Henri Adreit , Sébastien Ravel et al.
PLoS Pathogens, 2022, 18, pp.e1010687. ⟨10.1371/journal.ppat.1010687⟩
Article dans une revue hal-03948351 v1
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Botrytis cinerea strains infecting grapevine and tomato display contrasted repertoires of accessory chromosomes, transposons and small RNAs

Adeline Simon , Alex Mercier , Pierre P. Gladieux , Benoît Poinssot , Anne-Sophie Walker et al.
Peer Community Journal, 2022, 2, pp.e83. ⟨10.24072/pcjournal.211⟩
Article dans une revue hal-03910388 v1
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1H, 13C, 15 N backbone and side-chain NMR assignments for three MAX effectors from Magnaporthe oryzae

Mounia Lahfa , André Padilla , Karine de Guillen , Joana Pissarra , Mouna Raji et al.
Biomolecular NMR Assignments, 2022, 16 (2), pp.305-309. ⟨10.1007/s12104-022-10095-2⟩
Article dans une revue hal-04234517 v1

1H, 13C, 15 N backbone and side-chain NMR assignments for three MAX effectors from Magnaporthe oryzae

Mounia Lahfa , André Padilla , Karine de Guillen , Joana Pissarra , Mouna Raji et al.
Biomolecular NMR Assignments, 2022, 16 (2), pp.305-309. ⟨10.1007/s12104-022-10095-2⟩
Article dans une revue hal-04706672 v1

Population Genomic- and Phylogenomic-Enabled Advances to Increase Insight Into Pathogen Biology and Epidemiology

Remco Stam , Pierre P. Gladieux , Boris Vinatzer , Erica Goss , Neha Potnis et al.
Phytopathology, 2021, 111 (1), pp.8-11. ⟨10.1094/PHYTO-11-20-0528-FI⟩
Article dans une revue hal-03152542 v1
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Tracing the Origin and Evolutionary History of Pyricularia oryzae Infecting Maize and Barnyard Grass

Adel Pordel , Sebastien Ravel , Florian Charriat , Pierre P. Gladieux , Sandrine Cros-Arteil et al.
Phytopathology, 2021, 111 (1), pp.128-136. ⟨10.1094/PHYTO-09-20-0423-R⟩
Article dans une revue hal-03468375 v1
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Population genomics reveals molecular determinants of specialization to tomato in the polyphagous fungal pathogen Botrytis cinerea in France

Alex Mercier , Adeline Simon , Nicolas Lapalu , Tatiana E Giraud , Marc Bardin et al.
Phytopathology, 2021, 111, pp.2355-2366. ⟨10.1094/PHYTO-07-20-0302-FI⟩
Article dans une revue hal-03197705 v1
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Higher gene flow in sex-related chromosomes than in autosomes 2 during fungal divergence

Fanny E Hartmann , Ricardo Rodriguez de La Vega , Pierre Gladieux , Wen-Juan Ma , Michael E Hood et al.
Molecular Biology and Evolution, 2020, 37 (3), pp.668-682. ⟨10.1093/molbev/msz252⟩
Article dans une revue hal-02334226 v2
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The taxonomy of the model filamentous fungus Podospora anserina

S Lorena Ament-Velásquez , Hanna Johannesson , Tatiana E Giraud , Robert Debuchy , Sven J Saupe et al.
MycoKeys, 2020, 75, pp.51-69. ⟨10.3897/mycokeys.75.55968⟩
Article dans une revue hal-03024403 v1
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Heterogeneity of the rice microbial community of the Chinese centuries-old Honghe Hani rice terraces system

Pascal Alonso , Laurence Blondin , Pierre Gladieux , Frédéric Mahé , Hervé Sanguin et al.
Environmental Microbiology, In press, ⟨10.1111/1462-2920.15114⟩
Article dans une revue hal-02907950 v1

A genomic approach to develop a new qPCR test enabling detection of the pyricularia oryzae lineage causing wheat blast

Maud Thierry , Pierre Gladieux , Elisabeth Fournier , Didier Tharreau , Renaud Ioos
Plant Disease, 2020, 104 (1), pp.60-70. ⟨10.1094/PDIS-04-19-0685-RE⟩
Article dans une revue hal-02622485 v1
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Origin of the aromatic group of cultivated rice (Oryza sativa L.) traced to the Indian subcontinent

Peter Civan , Sajid Ali , Riza Batista-Navarro , Konstantina Drosou , Chioma Ihejieto et al.
Genome Biology and Evolution, 2019, 11 (3), pp.832-843. ⟨10.1093/gbe/evz039⟩
Article dans une revue hal-02627393 v1
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Pyricularia graminis-tritici is not the correct species name for the wheat blast fungus: response to Ceresini et al. (MPP 20:2)

Barbara Valent , Mark Farman , Yukio Tosa , Dominik Begerow , Elisabeth Fournier et al.
Molecular Plant Pathology, 2019, 20 (2), pp.173-179. ⟨10.1111/mpp.12778⟩
Article dans une revue hal-02622189 v1
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Emergence of Southern Rice Black-Streaked Dwarf Virus in the Centuries-Old Chinese Yuanyang Agrosystem of Rice Landraces

Pascal Alonso , Pierre Gladieux , Oumaima Moubset , Pei-Jung Shih , Pierre Mournet et al.
Viruses, 2019, 11 (11), pp.1-13. ⟨10.3390/v11110985⟩
Article dans une revue hal-02619099 v1

Pyricularia oryzae : quelques précisions taxonomiques

Didier Tharreau , Elisabeth Fournier , Pierre P. Gladieux , Marc-Henri Lebrun
Phytoma la Défense des Végétaux, 2019, 723
Article dans une revue hal-02944071 v1

Programmed Cell Death in Neurospora crassa Is Controlled by the Allorecognition Determinant rcd-1

Asen Daskalov , Pierre Gladieux , Jens Heller , N. Louise Glass
Genetics, 2019, 213 (4), pp.1387-1400. ⟨10.1534/genetics.119.302617⟩
Article dans une revue hal-02619094 v1
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Understanding Adaptation, Coevolution, Host Specialization, and Mating System in Castrating Anther-Smut Fungi by Combining Population and Comparative Genomics

Fanny E Hartmann , Ricardo Rodriguez de La Vega , Fantin E Carpentier , Pierre Gladieux , Amandine Cornille et al.
Annual Review of Phytopathology, 2019, 57, pp.431-457. ⟨10.1146/annurev-phyto-082718-095947⟩
Article dans une revue hal-02281429 v1

Multiple Introductions Without Admixture of Colletotrichum truncatum Associated with Soybean Anthracnose in Brazil

Flávia Rogério , Pierre Gladieux , Nelson Sidnei Massola , Maisa Ciampi-Guillardi
Phytopathology, 2019, 109 (4), pp.681-689. ⟨10.1094/PHYTO-08-18-0321-R⟩
Article dans une revue hal-02627952 v1
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The polyphagous plant pathogenic fungus Botrytis cinerea encompasses host-specialized and generalist populations

Alex Mercier , Florence Carpentier , Clémentine Duplaix , Annie Auger , Jean-Marc Pradier et al.
Environmental Microbiology, 2019, 21 (12), pp.4808-4821. ⟨10.1111/1462-2920.14829⟩
Article dans une revue hal-02618365 v1
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Co-occurrence among three divergent plant-castrating fungi in the same Silene host species

Jessica Lee Abbate , Pierre Gladieux , Michael E Hood , Damien de Vienne , Janis Antonovics et al.
Molecular Ecology, 2018, 27 (16), pp.3357 - 3370. ⟨10.1111/mec.14805⟩
Article dans une revue hal-01921830 v1

What makes a specialized endophyte special?

Pierre Gladieux
Molecular Ecology, 2018, 27 (15), pp.3037-3039. ⟨10.1111/mec.14775⟩
Article dans une revue hal-02620792 v1
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Coexistence of multiple endemic and pandemic lineages of the rice blast pathogen

Pierre Gladieux , Sébastien Ravel , Adrien Rieux , Sandrine Cros-Arteil , Henri Adreit et al.
mBio, 2018, 9 (2), ⟨10.1128/mBio.01806-17⟩
Article dans une revue hal-02624365 v1
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Updates in the Language of Histoplasma Biodiversity

Pierre Gladieux
mBio, 2018, 9 (3), ⟨10.1128/mBio.00181-18⟩
Article dans une revue hal-02619830 v1
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Genome wide analysis of the transition to pathogenic lifestyles in Magnaporthales fungi

Ning Zhang , Guohong Cai , Dana C. Price , Jo Anne Crouch , Pierre Gladieux et al.
Scientific Reports, 2018, 8, pp.1-13. ⟨10.1038/s41598-018-24301-6⟩
Article dans une revue hal-02621575 v1
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Gene Flow between Divergent Cereal- and Grass-Specific Lineages of the Rice Blast Fungus Magnaporthe oryzae

Pierre Gladieux , Bradford Condon , Sébastien Ravel , Darren Soanes , Joao Leodato Nunes Maciel et al.
mBio, 2018, 9 (1), ⟨10.1128/mBio.01219-17⟩
Article dans une revue hal-02625604 v1

NLR surveillance of essential SEC-9 SNARE proteins induces programmed cell death upon allorecognition in filamentous fungi

Jens Heller , Corinne Clavé , Pierre Gladieux , Sven J. Saupe , N. Louise Glass
Proceedings of the National Academy of Sciences of the United States of America, 2018, 115 (10), pp.E2292-E2301. ⟨10.1073/pnas.1719705115⟩
Article dans une revue hal-02624524 v1
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Genomic signatures of adaptation to wine biological aging conditions in biofilm-forming flor yeasts

Anna Lisa Coi , Frederic Bigey , Sandrine Mallet , Souhir Marsit , G. Zara et al.
Molecular Ecology, 2017, 26 (7), pp.2150-2166. ⟨10.1111/mec.14053⟩
Article dans une revue hal-01608516 v1
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Continental-level population differentiation and environmental adaptation in the mushroom Suillus brevipes

Sara Branco , Ke Bi , Hui-Ling Liao , Pierre Gladieux , Helene Badouin et al.
Molecular Ecology, 2017, 26 (7), pp.2063-2076. ⟨10.1111/mec.13892⟩
Article dans une revue hal-02624420 v1
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Co-occurrence and hybridization of anther-smut pathogens specialized on Dianthus hosts

Elsa Petit , Casey Silver , Amandine Cornille , Pierre Gladieux , Lisa Rosenthal et al.
Molecular Ecology, 2017, 26 (7), pp.1877-1890. ⟨10.1111/mec.14073⟩
Article dans une revue hal-01605903 v1
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Widespread selective sweeps throughout the genome of model plant pathogenic fungi and identification of effector candidates

Helene Badouin , Pierre Gladieux , Jerome Gouzy , Sophie Siguenza , Gabriela Aguileta et al.
Molecular Ecology, 2017, 26 (7), ⟨10.1111/mec.13976⟩
Article dans une revue hal-01448856 v1

Sources of Fungal Genetic Variation and Associating It with Phenotypic Diversity

J. W. Taylor , S. Branco , C. Gao , C. Hann-Soden , L. Montoya et al.
Microbiology Spectrum, 2017, 5 (5), pp.1-21. ⟨10.1128/microbiolspec.FUNK-0057-2016⟩
Article dans une revue hal-01608668 v1

cloncase : Estimation of sex frequency and effective population size by clonemate resampling in partially clonal organisms

Sajid S. Ali , Samuel Soubeyrand , Pierre Gladieux , Tatiana Giraud , Marc Leconte et al.
Molecular Ecology Resources, 2016, 16 (4), pp.845-861. ⟨10.1111/1755-0998.12511⟩
Article dans une revue istex hal-02328854 v1
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Emergence of wheat blast in Bangladesh was caused by a South American lineage of Magnaporthe oryzae

M. Tofazzal Islam , Daniel Croll , Pierre Gladieux , Darren M. Soanes , Antoine Persoons et al.
BMC Biology, 2016, 14, pp.1-11. ⟨10.1186/s12915-016-0309-7⟩
Article dans une revue hal-02638254 v1
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Characterization of greenbeard genes Involved in long-distance kind discrimination in a microbial eukaryote

Jens Heller , Jiuhai Zhao , Gabriel Rosenfield , David J. Kowbel , Pierre Gladieux et al.
PLoS Biology, 2016, 14 (4), pp.e1002431. ⟨10.1371/journal.pbio.1002431⟩
Article dans une revue hal-02638459 v1
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Pathogen effectors and plant immunity determine specialization of the blast fungus to rice subspecies

Jingjing Liao , Huichuan Huang , Isabelle Meusnier , Henri Adreit , Aurélie Ducasse et al.
eLife, 2016, 5, pp.1-18. ⟨10.7554/eLife.19377⟩
Article dans une revue hal-01602225 v1
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Strong phylogeographic costructure between the anther-smut fungus and its white campion host

Alice Feurtey , Pierre Gladieux , Michael E. Hood , Alodie Snirc , Amandine Cornille et al.
New Phytologist, 2016, 3 (212), pp.668-679. ⟨10.1111/nph.14125⟩
Article dans une revue hal-01365319 v1
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Distribution and population structure of the anther smut Microbotryum silenes-acaulis parasitizing an arctic-alpine plant

Britta Bueker , Chris Eberlein , Pierre P. Gladieux , Angela Schaefer , Alodie Snirc et al.
Molecular Ecology, 2016, 25 (3), pp.811--824. ⟨10.1111/mec.13512⟩
Article dans une revue hal-01497390 v1

Emergence of new virulent populations of apple scab from nonagricultural disease reservoirs

Christophe Lemaire , Marie de Gracia , Thibault Leroy , Monika Michalecka , Hanne Lindhard-Pedersen et al.
New Phytologist, 2015, 209 (3), pp.1220-1229. ⟨10.1111/nph.13658⟩
Article dans une revue hal-01392705 v1

Globally invading populations of the fungal plant pathogen Verticillium dahliae are dominated by multiple divergent lineages

Dylan Pg Short , Suraj Gurung , Pierre Gladieux , Patrik Inderbitzin , Zahi K Atallah et al.
Environmental Microbiology, 2015, 17 (8), pp.2824. ⟨10.1111/1462-2920.12789⟩
Article dans une revue istex hal-02631621 v1
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Genomic sequencing reveals historical, demographic and selective factors associated with the diversification of the fire-associated fungus Neurospora discreta

Pierre Gladieux , Benjamin Wilson , Fanny Perraudeau , Liliam Montoya , David Kowbel et al.
Molecular Ecology, 2015, 24 (22), pp.5657-5675. ⟨10.1111/mec.13417⟩
Article dans une revue hal-01303142 v1

Identification of allorecognition loci in neurospora crassa by genomics and evolutionary approaches

Jiuhai H. Zhao , Pierre Gladieux , Elisabeth Hutchison , Joanna Bueche , Charles Hall et al.
Molecular Biology and Evolution, 2015, 32 (9), pp.2417-2432. ⟨10.1093/molbev/msv125⟩
Article dans une revue hal-02633307 v1
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Population structure and temporal maintenance of the multihost fungal pathogen<em> Botrytis cinerea</em>: causes and implications for disease management.

Anne Sophie A. S. Walker , Pierre Gladieux , Véronique Decognet , Marc Fermaud , Johann J. Confais et al.
Environmental Microbiology, 2015, 17 (4), pp.1261-1274. ⟨10.1111/1462-2920.12563⟩
Article dans une revue hal-02638009 v1
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Genetic isolation between two recently diverged populations of a symbiotic fungus

Sara Branco , Pierre P. Gladieux , Christopher Ellison , Alan Kuo , Kurt Labutti et al.
Molecular Ecology, 2015, 24 (11), pp.2747-2758. ⟨10.1111/mec.13132⟩
Article dans une revue hal-01303143 v1
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The population biology of fungal invasions

Pierre Gladieux , Alice Feurtey , Michael E. Hood , Alodie Snirc , Joanne Clavel et al.
Molecular Ecology, 2015, 24 (9), pp.1969-1986. ⟨10.1111/mec.13028⟩
Article dans une revue istex hal-02328879 v1
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Anthropogenic and natural drivers of gene flow in a temperate wild fruit tree: a basis for conservation and breeding programs in apples

Amandine Cornille , Alice Feurtey , Uriel Gelin , Jeanne Ropars , Kristine Misvanderbrugge et al.
Evolutionary Applications, 2015, 8 (4), pp.373-384. ⟨10.1111/eva.12250⟩
Article dans une revue hal-02328871 v1
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Degeneration of the Nonrecombining Regions in the Mating-Type Chromosomes of the Anther-Smut Fungi

Eric Fontanillas , Michael E Hood , Hélène Badouin , Elsa Petit , Valérie Barbe et al.
Molecular Biology and Evolution, 2015, 32 (4), pp.928-943. ⟨10.1093/molbev/msu396⟩
Article dans une revue hal-01302682 v1
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Fungal evolutionary genomics provides insight into the mechanisms of adaptive divergence in eukaryotes

Pierre P. Gladieux , Jeanne Ropars , Helene Badouin , Antoine Branca , Gabriela G. Aguileta et al.
Molecular Ecology, 2014, 23 (4), pp.753-773. ⟨10.1111/mec.12631⟩
Article dans une revue hal-01302695 v1

The domestication and evolutionary ecology of apples

Amandine Cornille , Tatiana Giraud , Marinus J.M. Smulders , Isabel Roldán-Ruiz , Pierre Gladieux
Trends in Genetics, 2014, 30 (2), pp.57-65. ⟨10.1016/j.tig.2013.10.002⟩
Article dans une revue hal-02328898 v1

Inferring the contribution of sexual reproduction, migration and off-season survival to the temporal maintenance of microbial populations: a case study on the wheat fungal pathogen Puccinia striiformis f.sp. tritici

Sajid S. Ali , Pierre P. Gladieux , Hidayatur Rahman , Saqib Muhammad , Ahmad Habib et al.
Molecular Ecology, 2014, 23 (3), pp.603-617. ⟨10.1111/mec.12629⟩
Article dans une revue istex hal-01303146 v1
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Origin, Migration Routes and Worldwide Population Genetic Structure of the Wheat Yellow Rust Pathogen Puccinia striiformis f.sp. tritici

Sajid S. Ali , Pierre Gladieux , Marc Leconte , Angelique Gautier , A.F. Justesen et al.
PLoS Pathogens, 2014, 10 (1), pp.003903. ⟨10.1371/journal.ppat.1003903⟩
Article dans une revue hal-01019256 v1

A high virulence and pathotype diversity of Puccinia striiformis f.sp. tritici at its centre of diversity, the Himalayan region of Pakistan

Sajid S. Ali , Marc M. Leconte , Hidayatur Rahman , Shahab Saqib , Pierre Gladieux et al.
European Journal of Plant Pathology, 2014, 140 (2), pp.275-290. ⟨10.1007/s10658-014-0461-2⟩
Article dans une revue hal-02640142 v1

Purifying selection after episodes of recurrent adaptive diversification in fungal pathogens

Pierre Gladieux , Benjamin Devier , Gabriela Aguileta , Corinne Cruaud , Tatiana Giraud
Infection, Genetics and Evolution, 2013, 17, pp.123-131. ⟨10.1016/j.meegid.2013.03.012⟩
Article dans une revue istex hal-02328913 v1
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The ‘Dr Jekyll and Mr Hyde fungus’: noble rot versus gray mold symptoms of Botrytis cinerea on grapes

Elisabeth Fournier , Pierre Gladieux , Tatiana Giraud
Evolutionary Applications, 2013, 6 (6), pp.960-969. ⟨10.1111/eva.12079⟩
Article dans une revue hal-02328908 v1
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Crop-to-wild gene flow and spatial genetic structure in the closest wild relatives of the cultivated apple

Amandine Cornille , Pierre Gladieux , Tatiana Giraud
Evolutionary Applications, 2013, 6 (5), pp.737-748. ⟨10.1111/eva.12059⟩
Article dans une revue hal-02328919 v1

Postglacial recolonization history of the European crabapple (Malus sylvestris Mill.), a wild contributor to the domesticated apple

A. Cornille , T. Giraud , C. Bellard , A. Tellier , Bruno Le Cam et al.
Molecular Ecology, 2013, 22 (8), pp.2249 - 2263. ⟨10.1111/mec.12231⟩
Article dans une revue istex hal-01209911 v1

History of the invasion of the anther smut pathogen on Silene latifolia in North America

Michaël Fontaine , Pierre Gladieux , Michael E Hood , Tatiana Giraud
New Phytologist, 2013, 198 (3), pp.946-956. ⟨10.1111/nph.12177⟩
Article dans une revue hal-02328942 v1

Migration patterns and changes in population biology associated with the worldwide spread of the oilseed rape pathogen Leptosphaeria maculans

Azita A. Dilmaghani , P. P. Gladieux , Lilian L. Gout , Tatiana T. Giraud , P. P. Brunner et al.
Molecular Ecology, 2012, 21 (10), pp.2519-2533. ⟨10.1111/j.1365-294X.2012.05535.x⟩
Article dans une revue hal-01000602 v1
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Evolution of pathogenicity traits in the apple scab fungal pathogen in response to the domestication of its host

Amandine Le Van , Pierre Gladieux , Christophe Lemaire , Amandine Cornille , Tatiana Giraud et al.
Evolutionary Applications, 2012, 5 (7), pp.694 - 704. ⟨10.1111/j.1752-4571.2012.00246.x⟩
Article dans une revue hal-01209918 v1
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New insight into the history of domesticated apple: secondary contribution of the European wild apple to the genome of cultivated varieties

Amandine Cornille , Pierre Gladieux , Marinus J. M. Smulders , Isabel Roldan-Ruiz , Francois Laurens et al.
PLoS Genetics, 2012, 8 (5), ⟨10.1371/journal.pgen.1002703⟩
Article dans une revue hal-01209929 v1

Emergence of novel fungal pathogens by ecological speciation: importance of the reduced viability of immigrants

Pierre Gladieux , Fabien Guérin , Tatiana Giraud , Valérie Caffier , Christophe Lemaire et al.
Molecular Ecology, 2011, 20 (21), pp.4521-4532. ⟨10.1111/j.1365-294X.2011.05288.x⟩
Article dans une revue istex hal-02329021 v1
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The genetic structure of the plant pathogenic fungus Melampsora larici-populina on its wild host is extensively impacted by host domestication

Constance Xhaard , Bénédicte Fabre , Axelle Andrieux , P. Gladieux , Benoît Barres et al.
Molecular Ecology, 2011, 20 (13), pp.2739-2755. ⟨10.1111/j.1365-294X.2011.05138.x⟩
Article dans une revue hal-01136973 v1

Distinct invasion sources of common ragweed (Ambrosia artemisiifolia) in Eastern and Western Europe

Pierre Gladieux , Tatiana Giraud , Levente Kiss , Benjamin Genton , Odile Jonot et al.
Biological Invasions, 2011, 13 (4), pp.933-944. ⟨10.1007/s10530-010-9880-y⟩
Article dans une revue istex hal-02329038 v1

Distribution of the anther-smut pathogen Microbotryum on species of the Caryophyllaceae

Michael E Hood , Jorge Mena-Alí , Amanda K Gibson , Bengt Oxelman , Tatiana Giraud et al.
New Phytologist, 2010, 187 (1), pp.217-229. ⟨10.1111/j.1469-8137.2010.03268.x⟩
Article dans une revue hal-02333085 v1

Maintenance of Fungal Pathogen Species That Are Specialized to Different Hosts: Allopatric Divergence and Introgression through Secondary Contact

P. Gladieux , E. Vercken , M. Fontaine , M. Hood , O. Jonot et al.
Molecular Biology and Evolution, 2010, 28 (1), pp.459-471. ⟨10.1093/molbev/msq235⟩
Article dans une revue hal-02333046 v1

Evolution of the population structure of Venturia inaequalis, the apple scab fungus, associated with the domestication of its host

Pierre Gladieux , Xiu-Guo Zhang , Isabel Roldan-Ruiz , Valérie Caffier , Thibault Leroy et al.
Molecular Ecology, 2010, 19 (4), pp.658-674. ⟨10.1111/j.1365-294X.2009.04498.x⟩
Article dans une revue istex hal-04331642 v1

Host-specific differentiation among populations of Venturia inaequalis causing scab on apple, pyracantha and loquat.

Pierre Gladieux , Valérie Caffier , Martine Devaux , Bruno Le Cam
Fungal Genetics and Biology, 2010, 47 (6), pp.511-521. ⟨10.1016/j.fgb.2009.12.007⟩
Article dans une revue istex hal-02668199 v1
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Glacial Refugia in Pathogens: European Genetic Structure of Anther Smut Pathogens on Silene latifolia and Silene dioica

Elodie Vercken , Michaël Fontaine , Pierre Gladieux , Michael E Hood , Odile Jonot et al.
PLoS Pathogens, 2010, 6 (12), pp.e1001229. ⟨10.1371/journal.ppat.1001229⟩
Article dans une revue hal-02333050 v1

Genetic polymorphism of Microbotryum violaceum sl Isolates collected from different plant species on the territory of Russia

Ar Karapetyan , Pierre Gladieux , Ia Zakharov
Genetika / Russian Journal of Genetics, 2010, 46 (11), pp.1395-1398. ⟨10.1134/S1022795410110165⟩
Article dans une revue istex hal-02657820 v1

Linking the emergence of fungal plant diseases with ecological speciation

Tatiana Giraud , Pierre Gladieux , Sergey Gavrilets
Trends in Ecology & Evolution, 2010, 25 (7), pp.387-395. ⟨10.1016/j.tree.2010.03.006⟩
Article dans une revue hal-02333057 v1
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On the Origin and Spread of the Scab Disease of Apple: Out of Central Asia

Pierre Gladieux , Xiu-Guo Zhang , Damien Afoufa-Bastien , Rosa-Maria Valdebenito Sanhueza , Mohamed Sbaghi et al.
PLoS ONE, 2008, 3 (1), pp.e1455. ⟨10.1371/journal.pone.0001455⟩
Article dans une revue hal-02669128 v1

Origin and colonization history of newly virulent strains of the phytopathogenic fungus Venturia inaequalis

Fabien Guérin , Pierre Gladieux , Bruno Le Cam
Fungal Genetics and Biology, 2007, 44 (4), pp.284-292. ⟨10.1016/j.fgb.2006.10.005⟩
Article dans une revue istex hal-02661237 v1
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Establishment of pangenome graphs for the analysis and monitoring of fungal plant pathogen populations

Nicolas Lapalu , Antoine Loth , Fabrice Legeai , Ludovic Duvaux , Elisabeth Fournier et al.
ISCLB 2024 (International Symposium on Cereal Leaf Blights), Jun 2024, Zurich (CH), Switzerland. ⟨10.15454/1.5572369328961167E12⟩
Poster de conférence hal-04623680 v1

Could small interfering RNA be involved in host specialization in the grey mould fungus Botrytis cinerea?

Adeline Simon , Alex Mercier , Guillaume Morgant , Pierre Gladieux , Anne-Sophie Walker et al.
ECFG15 European conference on fungal genetics, Feb 2020, Rome, Italy. p.310
Poster de conférence hal-04275453 v1

Population structure and host specialization in Botrytis cinerea

Alex Mercier , Marguerite Cuel , Jean-Marc Pradier , Adeline Simon , Muriel Viaud et al.
30. Fungal Genetics Conference, Mar 2019, Asilomar, United States. , 2019
Poster de conférence hal-02786283 v1
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Genomic study shows endemic and pandemic rice blast lineages and lineages between rice and setaria infecting gene pools

Maud Thierry , Adrien Rieux , Sébastien Ravel , Sandrine Cros-Arteil , Henri Adreit et al.
10. French Society for Plant Pathology (SFP), May 2017, Dunkerque, Malo-les-Bains, France. , 236 p., 2017, Deepen Knowledge in Plant Pathology for Innovative Agro-Ecology : Book of Abstracts
Poster de conférence hal-01606836 v1
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Population structure and host specialization in Botrytis cinerea

Anne-Sophie Walker , Alex Mercier , Marguerite Cuel , Jean-Marc Pradier , Adeline Simon et al.
10. French Society for Plant Pathology (SFP), May 2017, Dunkerque, Malo-les-Bains, France. , 236 p., 2017, Deepen Knowledge in Plant Pathology for Innovative Agro-Ecology : Book of Abstracts
Poster de conférence hal-01603401 v1

Population structure and host specialization in Botrytis cinerea

Anne-Sophie Walker , A. Mercier , M. Cuel , Jean Marc Pradier , Adeline Simon et al.
10th French society for plant pathology conference, May 2017, Dunkerque, France.
Poster de conférence hal-04289673 v1

Population structure and host specialization in Botrytis cinerea

Anne-Sophie Walker , Alex Mercier , Marguerite Cuel , Jean-Marc Pradier , Adeline Simon et al.
17. International Botrytis Symposium, Oct 2016, Santa-Cruz, Chile. , 178 p., 2016, Abstract book : XVII International Botrytis Symposium
Poster de conférence hal-01532611 v1
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Population structure and temporal maintenance of Puccinia striiformis in the Himalayan region of Pakistan

Sajid S. Ali , Pierre Gladieux , Hidayatur Rahman , Shahab Saqib , Muhammad Fiaz et al.
Disease risk and food security. Proceedings of the 13th International cereal rusts and powdery mildews conference,, Aug 2012, Beijing, China. Wan-Quan CHEN, 2012, Session 2. population genetics and pathogen diversity
Poster de conférence hal-01191240 v1

Worldwide population genetic analyses suggests Himalaya as a centre of diversity for Puccinia striiformis f.sp. with high sex ability and temperature adaptation

Sajid S. Ali , Jerome Enjalbert , P. Gladieux , Marc Leconte , Angelique Gautier et al.
8° Colloque de la Société Française de Phytopathologie (SFP), Jun 2012, Paris, France. , 2012, Session Posters Ecologie évolutive du parasitisme et de la symbiose - biologie et génétique des populations de bioagresseurs et des symbiotes
Poster de conférence hal-01191173 v1
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Adaptive evolution in virulence effectors of the rice blast fungus Pyricularia oryzae

Marie Le Naour-Vernet , Florian Charriat , Jérôme Gracy , Sandrine Cros-Arteil , Sébastien Ravel et al.
2024
Pré-publication, Document de travail (preprint/prepublication) hal-04709363 v1
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The structural landscape and diversity of Pyricularia oryzae MAX effectors revisited

Mounia Lahfa , Philippe Barthe , Karine De Guillen , Stella Cesari , Mouna Raji et al.
2023
Pré-publication, Document de travail hal-04236508 v1

Stepwise recombination suppression around the mating-type locus in the fungus Schizothecium tetrasporum (Ascomycota, Sordariales)

Nina Vittorelli , Alodie Snirc , Emilie Levert , Valérie Gautier , Christophe Lalanne et al.
2022
Pré-publication, Document de travail (preprint/prepublication) hal-03812349 v1

Ecological Differentiation and Incipient Speciation in the Fungal Pathogen Causing Rice Blast

Maud Thierry , Joëlle Milazzo , Henri Adreit , Sébastien Ravel , Sonia Borron et al.
2020
Pré-publication, Document de travail (preprint/prepublication) hal-02944041 v1
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The polyphagous plant pathogenic fungus Botrytis cinerea encompasses host-specialized and generalist populations

Alex Mercier , Florence Carpentier , Clémentine Duplaix , Annie Auger , Jean-Marc Pradier et al.
2019
Pré-publication, Document de travail (preprint/prepublication) hal-02944047 v1

Coexistence of multiple endemic and pandemic lineages of the rice blast pathogen

Pierre P. Gladieux , Sébastien Ravel , Adrien Rieux , Sandrine Cros-Arteil , Henri Adreit et al.
2020
Pré-publication, Document de travail (preprint/prepublication) hal-02944054 v1

Gene flow between divergent cereal‐ and grass-specific lineages of the rice blast fungus Magnaporthe oryzae

Pierre P. Gladieux , Bradford Condon , Sebastien Ravel , Darren Soanes , Joao Leodato Nunes Maciel et al.
2020
Pré-publication, Document de travail (preprint/prepublication) hal-02944056 v1

Emergence of wheat blast in Bangladesh was caused by a South American lineage of Magnaporthe oryzae

Tofazzal Islam , Daniel Croll , Pierre P. Gladieux , Darren Soanes , Antoine Persoons et al.
2020
Pré-publication, Document de travail hal-02944058 v1

Botrytis cinerea strains infecting grapevine and tomato display contrasted repertoires of accessory chromosomes, transposons and small RNAs

Adeline Simon , Alex Mercier , Pierre P. Gladieux , Benoit Poinssot , Anne-Sophie Walker et al.
1st Joint Botrytis-Sclerotinia Symposium, Jul 2022, Avignon, France
Communication dans un congrès hal-04084480 v1

Eternal Rice: a case study of sustainable management of plant resistance

H. Huang , J. Liao , Isabelle Meusnier , Didier Tharreau , Henri Adreit et al.
18th Ecology and Evolution of Infectious Diseases meeting, Jun 2021, Montpellier, France
Communication dans un congrès hal-04481342 v1

Exploring NLR diversity in Oryza sativa

S. Fairhead , Thomas Kroj , Pierre Gladieux , A. Jouet , K. Witek et al.
18. Congress of International-Society-for-Molecular-Plant-Microbe-Interactions (IS-MPMI), International Society for Molecular Plant-Microbe Interactions (IS-MPMI). INT., Jul 2019, Glasgow, United Kingdom
Communication dans un congrès hal-02734788 v1

Disease Emergence and Fungal Speciation

Pierre Gladieux
Séminaires du WSL, Institut Fédéral de Recherches sur la Forêt, la Neige et le Paysage WSL. CHE., 2019, Birmensdorf, Switzerland
Communication dans un congrès hal-02786338 v1
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Population structure and host specialization in Botrytis cinerea

Alex Mercier , Adeline Simon , Clémentine Duplaix , Marguerite Cuel , Jean-Marc Pradier et al.
Journées Jean Chevauchon JJC2018 - 12èmes Rencontres de Phytopathologie & Mycologie,, Jan 2018, Aussois, France. p.19
Communication dans un congrès hal-02785894 v1

Disease Emergence and Fungal Speciation

Pierre Gladieux
Séminaires du Centre for Ecological and Evolutionary Synthesis, Centre for Ecological and Evolutionary Synthesis (CEES). Oslo., 2018, Oslo, Norway
Communication dans un congrès hal-02785216 v1

Disease Emergence and Fungal Speciation

Pierre Gladieux
Séminaires du département de Génétique de l'Université de Neuchatel, Université de Neuchâtel (UNINE). Neuchâtel, CHE., 2018, Neuchatel, Switzerland
Communication dans un congrès hal-02785215 v1

Emergence and spread of the multihost pathogen Pyricularia oryzae

Pierre Gladieux
Fungal Ecology And Evolution, Max-Planck-Institut. DEU., Mar 2018, Plön, Germany
Communication dans un congrès hal-02786565 v1

Multiple endemic and pandemic lineages of the rice blast pathogen and gene flow into recombining populations from Southeast continental Asia

Pierre Gladieux , Maud Thierry , Adrien Rieux , Sébastien Ravel , Sandrine Cros-Arteil et al.
International Conference on Population Genomics of Fungal and Oomycete Diseases of Animals and Plants, May 2017, Ascona, Switzerland
Communication dans un congrès hal-02785211 v1

Genomic analysis reveals multiple endemic and pandemic lineages of rice blast and gene flow into recombining populations from southeast continental Asia

Pierre Gladieux , Maud Thierry , Adrien Rieux , Sébastien Ravel , Sandrine Cros-Arteil et al.
29. Fungal Genetics Conference, Genetics Society of America (GSA). USA., Mar 2017, Asilomar, United States. 290 p
Communication dans un congrès hal-02733567 v1

Population genomics of pandemic and endemic rice-infecting lineages of Magnaporthe oryzae

Pierre Gladieux , Sébastien Ravel , Adrien Rieux , Elisabeth Fournier , Didier Tharreau
13. European Conference on Fungal Genetics (ECFG13), Apr 2016, Paris, France. 620 p
Communication dans un congrès hal-02739165 v1

Genomic Sequencing Reveals Demographic, Historical, and Selective Factors Associated with the Diversification of the Fire-Associated Fungus Neurospora discreta

Pierre Gladieux , Ben Wilson , Fanny Perraudeau , Liliam A Montoya , David Kowbel et al.
15. workshop of the COST Action SUSTAIN on Evolutionary genomics of plant pathogens, Aug 2015, Kiel, Germany. 79 p
Communication dans un congrès hal-02741270 v1
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Inferring the origin and trajectories of recent invasions of wheat yellow rust strains from worldwide population structrure

Sajid S. Ali , Jerome J. Enjalbert , Pierre P. Gladieux , Mogens Støvring M. S. Hovmøller , Claude C. Pope de Vallavieille
Borlaug Global Rust Initiative (BGRI) Technical Workshop, Aug 2013, New-Delhi, India
Communication dans un congrès hal-01004260 v1

When Resistance genes introgressed in agrosystems act as gateways for virulent populations from the wild: the apple scab case study

Christophe Lemaire , Thibault Leroy , Pierre Gladieux , Marie de Gracia , Fabien Guérin et al.
Plant Resistance Sustainability International Conference, 2012, La Colle sur Loup, France
Communication dans un congrès hal-03284033 v1

Magic traits drive the emergence of pathogens

Pierre Gladieux , Fabien Guérin , Tatiana Giraud , Valérie Caffier , Christophe Lemaire et al.
26th Fungal Genetics Conference, 2011, Asilomar, United States
Communication dans un congrès hal-03284030 v1

Worldwide spread and evolution of pathogenicity traits of the apple scab fungus Venturia inaequalis associated with the domestication of its host

Bruno Le Cam , Pierre Gladieux , Amandine Lê Van , Charles-Eric Durel , Thibault Leroy et al.
Cycle de division : dans le temps et l’espace - Conférences Jacques Monod, 2010, Roscoff, France
Communication dans un congrès hal-03284024 v1

Origine de la tavelure du pommier et changements évolutifs liés à la domestication de son hôte

Amandine Le Van , Pierre Gladieux , Valérie Caffier , Charles Eric Durel , Bruno Le Cam
7. Colloque National de la Société Française de Phytopathologie, Jun 2009, Lyon, France. 1 p
Communication dans un congrès hal-02819227 v1
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Chapter 13 - Neurospora from Natural Populations: Population Genomics Insights into the Life History of a Model Microbial Eukaryote

Pierre Gladieux , Fabien de Bellis , Christopher Hann-Soden , Jesper Svedberg , Hanna Johannesson et al.
Julien Y. Dutheil. Statistical Population Genomics, 2090, Springer Nature; Springer Protocols; Humana Press, pp.313-336, 2020, Methods in Molecular Biology, 978-1-0716-0198-3. ⟨10.1007/978-1-0716-0199-0_13⟩
Chapitre d'ouvrage hal-02281657 v2

Neurospora from Natural Populations: Population Genomics Insights into the Life History of a Model Microbial Eukaryote

Pierre Gladieux , Fabien de Bellis , Christopher Hann-Soden , Jesper Svedberg , Hanna Johannesson et al.
Statistical Population Genomics, 2090, Springer Nature Switzerland AG, pp.313-336, 2020, Methods in Molecular Biology, 978-1-0716-0198-3. ⟨10.1007/978-1-0716-0199-0_13⟩
Chapitre d'ouvrage hal-02789844 v1

Understanding Adaptation, Coevolution, Host Specialization, and Mating System in Castrating Anther-Smut Fungi by Combining Population and Comparative Genomics

Fanny E. Hartmann , Ricardo C. Rodriguez de La Vega , Fantin Carpentier , Pierre Gladieux , Amandine Cornille et al.
Annual Review of Phytopathology, 57, Annual Reviews, 529 p., 2019, Annual Review of Phytopathology, 978-0-8243-1357-9. ⟨10.1146/annurev-phyto-082718095947⟩
Chapitre d'ouvrage hal-02791443 v1
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Epidemiology and Evolution of Fungal Pathogens in Plants and Animals

Pierre Gladieux , Edmond Byrnes , Gabriela Aguileta , Matthew C. Fisher , Joseph Heitman et al.
Genetics and Evolution of Infectious Disease, Elsevier, pp.59-132, 2011, 978-0-12-384891-8. ⟨10.1016/B978-0-12-384890-1.00004-2⟩
Chapitre d'ouvrage hal-02333038 v1