Phil M. Oger

205
Documents

Présentation

Education

2007 Habilitation à Diriger des Recherches de l'Université Claude Bernard Lyon 1

1995 PhD summa cum laude en Phytopathologie (Université Paris X1-Orsay)

1991 DEA en Phytopathologie (Université Paris X1-Orsay/INAP-G)

1991 Ingénieur agronome (Institut National Agronomique Paris-Grignon)

Expérience professionelle

2016-present DR CNRS, Adaptation aux Milieux Extrêmes, UMR 5240, INSA Lyon

2000-2015 CR puis DR CNRS, Géomicrobiology, Lab. de Géologie de Lyon, ENS de Lyon

1999-2000 Post-Doc, Institut des Sciences du Végétal, CNRS, Gif-sur-Yvette

1996-1999 Post-Doc, University of Illinois, Urbana-Champaign (USA)

Enseignement

2014 - auj.

2005 - 2014

1992 - 1995

Publications

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Publications

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Bilayer-Forming Lipids Enhance Archaeal Monolayer Membrane Stability

Margot Saracco , Philippe Schaeffer , Maxime Tourte , Sonja-Verena Albers , Yoann Louis et al.
International Journal of Molecular Sciences, 2025, 26 (7), pp.3045. ⟨10.3390/ijms26073045⟩
Article dans une revue hal-05007477 v1
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Genomic characterisation of novel extremophile lineages from the thalassohaline lake Dziani Dzaha expands the metabolic repertoire of the PVC superphylum

Adrien Vigneron , Lilian Cloarec , Céline Brochier-Armanet , Jean Pierre Flandrois , Marc Troussellier et al.
Environmental Microbiome, 2025, 20 (1), pp.48. ⟨10.1186/s40793-025-00699-1⟩
Article dans une revue hal-05065064 v1

Acidification-based mineral weathering mechanism involves a glucose/methanol/choline oxidoreductase in Caballeronia mineralivorans PML1(12)

Cintia Blanco Nouche , Laura Picard , Carine Cochet , Cédric Paris , Philippe Oger et al.
Applied and Environmental Microbiology, 2024, 90 (12), ⟨10.1128/aem.01221-24⟩
Article dans une revue hal-04771098 v1
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Biochemical characterization and mutational analysis of the NurA protein from the hyperthermophilic euryarchaeon Thermococcus barophilus Ch5

Guangyu Ma , Tan Lin , Peng Cao , Phil M. Oger , Kunming Dong et al.
Research in Microbiology, 2024, pp.104189. ⟨10.1016/j.resmic.2024.104189⟩
Article dans une revue hal-04480971 v1
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New insights into thermostable iron-containing/activated alcohol dehydrogenases from hyperthermophiles

Yushan Lin , Youcheng Yin , Phil M. Oger , Yong Gong , Xiaojian Zhou et al.
International Journal of Biological Macromolecules, 2024, 275, pp.133707. ⟨10.1016/j.ijbiomac.2024.133707⟩
Article dans une revue hal-04654920 v1
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Insights in extreme microbiology

Andreas Teske , Phil M. Oger
Frontiers in Microbiology, 2024, 15, pp.1473691. ⟨10.3389/fmicb.2024.1473691⟩
Article dans une revue hal-04677878 v1
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Lineage-dependent partitioning of activities in chemoclines defines Woesearchaeota ecotypes in an extreme aquatic ecosystem

Lilian A Cloarec , Thomas Bacchetta , Maxime Bruto , Christophe Leboulanger , Vincent Grossi et al.
Microbiome, 2024, 12 (1), pp.249. ⟨10.1186/s40168-024-01956-0⟩
Article dans une revue hal-04811121 v1
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Impact of Isotopic Exchange on Hydrated Protein Dynamics Revealed by Polarized Neutron Scattering

Agathe Nidriche , Martine Moulin , Phil M. Oger , J. Ross Stewart , Lucile Mangin-Thro et al.
PRX Life, 2024, 2 (1), pp.013005. ⟨10.1103/prxlife.2.013005⟩
Article dans une revue hal-04481004 v1
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Transcriptomic insights into the dominance of two phototrophs throughout the water column of a tropical hypersaline-alkaline crater lake (Dziani Dzaha, Mayotte)

Sébastien Duperron , Sébastien Halary , Jean-Pierre Bouly , Théotime Roussel , Mylène Hugoni et al.
Frontiers in Microbiology, 2024, 15, pp.1368523. ⟨10.3389/fmicb.2024.1368523⟩
Article dans une revue hal-04582518 v1
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Haloarchaea as Promising Chassis to Green Chemistry

Emma Bonnaud , Phil M. Oger , Avigaël Ohayon , Yoann Louis
Microorganisms, 2024, 12 (8), pp.1738. ⟨10.3390/microorganisms12081738⟩
Article dans une revue (article de synthèse) hal-04677423 v1
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Seismic events as potential drivers of the microbial community structure and evolution in a paleo-ocean analog

Adrien Vigneron , Lilian Cloarec , Hélène Agogué , Cécile Bernard , Sébastien Duperron et al.
Communications Earth & Environment, 2024, 5 (1), pp.504. ⟨10.1038/s43247-024-01615-0⟩
Article dans une revue hal-04709168 v1
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Effects of Crowding and Cosolutes on Biomolecular Function at Extreme Environmental Conditions

Judith Peters , Rosario Oliva , Antonino Caliò , Phil M. Oger , Roland Winter
Chemical Reviews, 2023, 123 (23), pp.13441-13488. ⟨10.1021/acs.chemrev.3c00432⟩
Article dans une revue (article de synthèse) hal-04296968 v1
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Phytoplanktonic species in the haloalkaline Lake Dziani Dzaha select their archaeal microbiome

Maxime Bruto , Phil M. Oger , Patrice Got , Cécile Bernard , Delphine Melayah et al.
Molecular Ecology, 2023, 32 (24), pp.6824-6838. ⟨10.1111/mec.17179⟩
Article dans une revue hal-04277813 v1

Biochemical and mutational studies of an endonuclease V from the hyperthermophilic crenarchaeon Sulfolobus islandicus REY15A

Youcheng Yin , Jingru Shi , Likui Zhang , Qing Liu , Yong Gong et al.
World Journal of Microbiology and Biotechnology, 2023, 39 (4), pp.90. ⟨10.1007/s11274-023-03526-2⟩
Article dans une revue hal-04297274 v1
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Bradyrhizobium commune sp. nov., isolated from nodules of a wide range of native legumes across the Australian continent

Bénédicte Lafay , Elina Coquery , Phil M. Oger
International Journal of Systematic and Evolutionary Microbiology, 2023, 73 (7), pp.005971. ⟨10.1099/ijsem.0.005971⟩
Article dans une revue hal-04191550 v1
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Incorporation and localisation of alkanes in a protomembrane model

Loreto Misuraca , Josephine Loricco , Phil M. Oger , Judith Peters , Bruno Demé
Biochimica et Biophysica Acta:Biomembranes, 2023, 1865 (3), pp.184119. ⟨10.1016/j.bbamem.2023.184119⟩
Article dans une revue hal-04297309 v1
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Biochemical characterization and mutational studies of endonuclease Q from the hyperthermophilic euryarchaeon Thermococcus gammatolerans

Mai Wu , Guangyu Ma , Yushan Lin , Phil M. Oger , Peng Cao et al.
DNA Repair, 2023, 126, pp.103490. ⟨10.1016/j.dnarep.2023.103490⟩
Article dans une revue hal-04297134 v1
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Thermostable DNA ligases from hyperthermophiles in biotechnology

Jingru Shi , Phil M. Oger , Peng Cao , Likui Zhang
Frontiers in Microbiology, 2023, 14, ⟨10.3389/fmicb.2023.1198784⟩
Article dans une revue hal-04297154 v1
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Molecular Rearrangements in Protomembrane Models Probed by Laurdan Fluorescence

Loreto Misuraca , Roland Winter , Bruno Demé , Phil M. Oger , Judith Peters
Membranes, 2023, 13 (4), pp.386. ⟨10.3390/membranes13040386⟩
Article dans une revue hal-04297292 v1
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The non-ribosomal peptide synthetase-independent siderophore (NIS) rhizobactin produced by Caballeronia mineralivorans PML1(12) confers the ability to weather minerals

Cintia Blanco Nouche , Cédric Paris , Tiphaine Dhalleine , Phil M. Oger , Marie-Pierre Turpault et al.
Applied and Environmental Microbiology, 2023, 89 (10), pp.0045323. ⟨10.1128/aem.00453-23⟩
Article dans une revue hal-04297012 v1
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Alkanes as Membrane Regulators of the Response of Early Membranes to Extreme Temperatures

Loreto Misuraca , Antonino Caliò , Josephine Loricco , Ingo Hoffmann , Roland Winter et al.
Life, 2022, 12 (3), pp.445. ⟨10.3390/life12030445⟩
Article dans une revue hal-03930744 v1
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Unravelling the Adaptation Mechanisms to High Pressure in Proteins

Antonino Caliò , Cécile Dubois , Stéphane Fontanay , Michael Marek Koza , François Hoh et al.
International Journal of Molecular Sciences, 2022, Feature Papers in Molecular Biophysics, 23 (15), pp.8469. ⟨10.3390/ijms23158469⟩
Article dans une revue hal-03744880 v1
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The Exploration of the Thermococcus barophilus Lipidome Reveals the Widest Variety of Phosphoglycolipids in Thermococcales

Maxime Tourte , Sarah Coffinet , Lars Wörmer , Julius S Lipp , Kai-Uwe Hinrichs et al.
Frontiers in Microbiology, 2022, 13, pp.869479. ⟨10.3389/fmicb.2022.869479⟩
Article dans une revue hal-03722871 v1
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Biochemical characterization and mutational analysis of a novel flap endonuclease 1 from Thermococcus barophilus Ch5

Tan Lin , Likui Zhang , Donghao Jiang , Leilei Wu , Kaige Chen et al.
International Journal of Biochemistry and Cell Biology, 2022, 143, pp.106154. ⟨10.1016/j.biocel.2021.106154⟩
Article dans une revue hal-03722823 v1
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Synthesis of phospholipids under plausible prebiotic conditions and analogies with phospholipid biochemistry or origin of life studies

Michele Fiore , Carolina Chieffo , Augustin Lopez , Dimitri Fayolle , Johal Ruiz et al.
Astrobiology, In press, ⟨10.1089/ast.2021.0059⟩
Article dans une revue hal-03591985 v1
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High temperature molecular motions within a model protomembrane architecture

Loreto Misuraca , Tatsuhito Matsuo , Aline Cisse , Josephine Loricco , Antonino Caliò et al.
Physical Chemistry Chemical Physics, 2022, 24, pp.15083-15090. ⟨10.1039/D2CP01205G⟩
Article dans une revue hal-03722910 v1

Biochemical characterization and mutational analysis of a mismatch glycosylase from the hyperthermophilic euryarchaeon Thermococcus barophilus Ch5

Lei Wang , Tan Lin , Phil M. Oger , Yong Gong , Likui Zhang
DNA Repair, 2022, 114, pp.103321. ⟨10.1016/j.dnarep.2022.103321⟩
Article dans une revue hal-03722864 v1
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Genomic and transcriptomic characterization of the Collimonas quorum sensing genes and regulon

Stephane Uroz , Océane Geisler , Laure Fauchery , Raphaël Lami , Alice M.S. Rodrigues et al.
FEMS Microbiology Ecology, 2022, 98 (11), ⟨10.1093/femsec/fiac100⟩
Article dans une revue hal-03915632 v1
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The mineral weathering ability of Collimonas pratensis PMB3(1) involves a Malleobactin-mediated iron acquisition system

Laura Picard , Cédric Paris , Tiphaine Dhalleine , Emmanuelle Morin , Phil M. Oger et al.
Environmental Microbiology, 2022, 24 (2), pp. 784-802. ⟨10.1111/1462-2920.15508⟩
Article dans une revue hal-03194986 v1
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Membrane adaptation in the hyperthermophilic archaeon Pyrococcus furiosus relies upon a novel strategy involving glycerol monoalkyl glycerol tetraether lipids

Maxime Tourte , Philippe Schaeffer , Vincent Grossi , Phil M. Oger
Environmental Microbiology, 2022, 24 (4), pp.2029-2046. ⟨10.1111/1462-2920.15923⟩
Article dans une revue hal-03845187 v1
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Complete Genome Sequence of Bradyrhizobium sp. Strain BDV5040, Representative of Widespread Genospecies B in Australia

Christine Oger-Desfeux , Jérôme Briolay , Phil M. Oger , Bénédicte Lafay
Microbiology Resource Announcements, 2021, 10 (3), pp.e01326-20. ⟨10.1128/MRA.01326-20⟩
Article dans une revue hal-03118246 v1
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Alkanes increase the stability of early life membrane models under extreme pressure and temperature conditions

Loreto Misuraca , Bruno Demé , Phil M. Oger , Judith Peters
Communications Chemistry, 2021, ⟨10.1038/s42004-021-00467-5⟩
Article dans une revue hal-03154757 v1
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Identification of a novel bifunctional uracil DNA glycosylase from Thermococcus barophilus Ch5

Likui Zhang , Donghao Jiang , Qi Gan , Haoqiang Shi , Li Miao et al.
Applied Microbiology and Biotechnology, In press, ⟨10.1007/s00253-021-11422-8⟩
Article dans une revue hal-03280471 v1
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Reappraisal of archaeal C20-C25 diether lipid (extended archaeol) origin and use as a biomarker of hypersalinity

Flore Vandier , Maxime Tourte , Cara Doumbe-Kingue , Julien Plancq , Philippe Schaeffer et al.
Organic Geochemistry, 2021, 159, pp.104276. ⟨10.1016/j.orggeochem.2021.104276⟩
Article dans une revue hal-03289860 v2

Straightforward Synthesis of Chiral Terpenoid Building Blocks by Ru-Catalyzed Enantioselective Hydrogenation

Johal Ruiz , Phil M. Oger , Laurent Soulère , Florence Popowycz
Journal of Organic Chemistry, 2021, ⟨10.1021/acs.joc.1c00677⟩
Article dans une revue hal-03275385 v1
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Complete genome of Bradyrhizobium sp. strain BDV5419, representative of Australian genospecies L

Christine Oger-Desfeux , Jerome Briolay , Phil M. Oger , Bénédicte Lafay
Microbiology Resource Announcements, 2021, 10 (8), pp.e00042-21. ⟨10.1128/MRA.00042-21⟩
Article dans une revue hal-03138171 v1
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The Piezo-Hyperthermophilic Archaeon Thermococcus piezophilus Regulates Its Energy Efficiency System to Cope With Large Hydrostatic Pressure Variations

Yann Moalic , Jordan Hartunians , Cécile Dalmasso , Damien Courtine , Myriam Georges et al.
Frontiers in Microbiology, 2021, 12, pp.730231. ⟨10.3389/fmicb.2021.730231⟩
Article dans une revue hal-03413270 v1
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Characterization of a novel type III alcohol dehydrogenase from Thermococcus barophilus Ch5

Likui Zhang , Donghao Jiang , Yuting Li , Leilei Wu , Qing Liu et al.
International Journal of Biological Macromolecules, 2021
Article dans une revue hal-03090883 v1
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Biochemical characterization and mutational studies of a novel 3-methlyadenine DNA glycosylase II from the hyperthermophilic Thermococcus gammatolerans

Donghao Jiang , Likui Zhang , Kunming Dong , Yong Gong , Phil M. Oger
DNA Repair, 2021
Article dans une revue hal-03035060 v1
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Acid Hydrolysis for the Extraction of Archaeal Core Lipids and HPLC-MS Analysis

Maxime Tourte , Philippe Schaeffer , Vincent Grossi , Phil M. Oger
Bio-protocol , 2021, 11 (16), ⟨10.21769/bioprotoc.4118⟩
Article dans une revue hal-03379753 v1
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Identification of a novel type of glucose dehydrogenase involved in the mineral weathering ability of Collimonas pratensis strain PMB3(1)

Laura Picard , Marie-Pierre M.-P. Turpault , Phil M. Oger , Stephane Uroz
FEMS Microbiology Ecology, 2021, 97 (1), pp.fiaa232. ⟨10.1093/femsec/fiaa232⟩
Article dans une revue hal-03000681 v1
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Characterisation of a synthetic Archeal membrane reveals a possible new adaptation route to extreme conditions

Marta Salvador-Castell , Maksym Golub , Nelli Erwin , Bruno Demé , Nicholas J Brooks et al.
Communications Biology, 2021, 4, ⟨10.1038/s42003-021-02178-y⟩
Article dans une revue hal-03272003 v1
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Non-Polar Lipids as Regulators of Membrane Properties in Archaeal Lipid Bilayer Mimics

Marta Salvador-Castell , Nicholas J Brooks , Roland Winter , Judith Peters , Phil M. Oger
International Journal of Molecular Sciences, 2021, 22 (11), ⟨10.3390/ijms22116087⟩
Article dans une revue hal-03272006 v1
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Dual transcriptomics and proteomics analyses of the early stage of interaction between Caballeronia mineralivorans PML1(12) and mineral

Stephane Uroz , Laura Picard , Marie-Pierre M.-P. Turpault , Lucas Auer , J. Armengaud et al.
Environmental Microbiology, In press, 22 (9), pp.3838-3862. ⟨10.1111/1462-2920.15159⟩
Article dans une revue hal-02902180 v1
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Novel intact polar and core lipid compositions in the Pyrococcus model species, P. furiosus and P. yayanosii, reveal the largest lipid diversity amongst Thermococcales

Maxime Tourte , Vanessa Kuentz , Philippe Schaeffer , Vincent Grossi , Anaïs Cario et al.
Biomolecules, 2020, 10 (6), pp.830. ⟨10.3390/biom10060830⟩
Article dans une revue hal-02861881 v1
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Induction of non-lamellar phases in archaeal lipids at high temperature and high hydrostatic pressure by apolar polyisoprenoids

Marta Salvador-Castell , Nicholas Brooks , Judith Peters , Phil M. Oger
Biochimica et Biophysica Acta:Biomembranes, 2020, 1862 (2), pp.183130. ⟨10.1016/j.bbamem.2019.183130⟩
Article dans une revue hal-02364592 v1
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Characterization and application of a family B DNA polymerase from the hyperthermophilic and radioresistant euryarchaeon Thermococcus gammatolerans

Likui Zhang , Donghao Jiang , Haoqiang Shi , Mai Wu , Qi Gan et al.
International Journal of Biological Macromolecules, 2020, 156, pp.217-224. ⟨10.1016/j.ijbiomac.2020.03.204⟩
Article dans une revue hal-02526997 v1
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Characterization of a Family IV uracil DNA glycosylase from the hyperthermophilic euryarchaeon Thermococcus barophilus Ch5

Qi Gan , Mengfan He , Haoqiang Shi , Phil M. Oger , Zhihui Yang et al.
International Journal of Biological Macromolecules, 2020, 146, pp.475-481. ⟨10.1016/j.ijbiomac.2019.12.202⟩
Article dans une revue hal-02441935 v1
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An alternative pathway for repair of deaminated bases in DNA triggered by archaeal NucS endonuclease

Likui Zhang , Haoqiang Shi , Qi Gan , Yuxiao Wang , Mai Wu et al.
DNA Repair, 2020, pp.102734. ⟨10.1016/j.dnarep.2019.102734⟩
Article dans une revue hal-02334467 v1
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Structural Characterization of an Archaeal Lipid Bilayer as a Function of Hydration and Temperature

Marta Salvador-Castell , Bruno Demé , Phil M. Oger , Judith Peters
International Journal of Molecular Sciences, 2020, 21 (5), pp.1816. ⟨10.3390/ijms21051816⟩
Article dans une revue hal-02508365 v1
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COVID-19 infection in first trimester of pregnancy marked by a liver cytolysis in a woman previously treated by hydroxychloroquine for repeated implantation failure: a case report

F. Lamazou , P. Oger , R. Dieli-Crimi , A. Guerin , V. Letouzey et al.
BMC Infectious Diseases, 2020, 20, pp.845. ⟨10.1186/s12879-020-05551-0⟩
Article dans une revue hal-03278006 v1
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Lipid phase separation induced by the apolar polyisoprenoid squalane demonstrates its role in membrane domain formation in archaeal membranes

Marta Salvador-Castell , Bruno Demé , Phil M. Oger , Judith Peters
Langmuir, 2020, 36 (26), pp.7375-7382. ⟨10.1021/acs.langmuir.0c00901⟩
Article dans une revue hal-02862864 v1
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Apolar Polyisoprenoids Located in the Midplane of the Bilayer Regulate the Response of an Archaeal-Like Membrane to High Temperature and Pressure

Josephine Loricco , Marta Salvador-Castell , Bruno Demé , Judith Peters , Phil M. Oger
Frontiers in Chemistry, 2020, 8, pp.594039. ⟨10.3389/fchem.2020.594039⟩
Article dans une revue hal-03000614 v2
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High-Temperature Behavior of Early Life Membrane Models

Loreto Misuraca , Antonino Caliò , Isabelle Grillo , Axelle Grélard , Phil M. Oger et al.
Langmuir, 2020, 36 (45), pp.13516-13526. ⟨10.1021/acs.langmuir.0c02258⟩
Article dans une revue hal-02988681 v1
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New Insights Into DNA Repair Revealed by NucS Endonucleases From Hyperthermophilic Archaea

Likui Zhang , Donghao Jiang , Mai Wu , Zhihui Yang , Phil M. Oger
Frontiers in Microbiology, 2020, 11, ⟨10.3389/fmicb.2020.01263⟩
Article dans une revue hal-02887791 v1
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Draft Genome Sequence of Collimonas pratensis Strain PMB3(1), an Effective Mineral-Weathering and Chitin-Hydrolyzing Bacterial Strain

Laura Picard , Phil M. Oger , Marie-Pierre M.-P. Turpault , Stephane Uroz
Microbiology Resource Announcements, 2020, 9 (37), ⟨10.1128/MRA.00601-20⟩
Article dans une revue hal-02939115 v1
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Functionalized Membrane Domains: An Ancestral Feature of Archaea?

Maxime Tourte , Philippe Schaeffer , Vincent Grossi , Phil M. Oger
Frontiers in Microbiology, 2020, 11, pp.526. ⟨10.3389/fmicb.2020.00526⟩
Article dans une revue hal-02553764 v1

Protomembranes at the origin of life

Loreto Misuraca , Bruno Demé , Judith Peters , Phil M. Oger , Phil M. Oger
European Biophysics Journal, 2019
Article dans une revue hal-02334473 v1
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Biochemical characterization of a thermostable DNA ligase from the hyperthermophilic euryarchaeon Thermococcus barophilus Ch5

Haoqiang Shi , Yanchao Huang , Qi Gan , Mianwen Rui , Hongxun Chen et al.
Applied Microbiology and Biotechnology, 2019, ⟨10.1007/s00253-019-09736-9⟩
Article dans une revue hal-02091415 v1
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The first study on the impact of osmolytes in whole cells of high temperature-adapted microorganisms

Marta Salvador-Castell , Maksym Golub , Nicolas Martinez , Jacques Ollivier , Judith Peters et al.
Soft Matter, 2019, 15 (41), pp.8381-8391. ⟨10.1039/c9sm01196j⟩
Article dans une revue hal-02318499 v1
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Biochemical characterization and mutational studies of the thermostable uracil DNA glycosylase from the hyperthermophilic euryarchaeon Thermococcus barophilus Ch5

Haoqiang Shi , Qi Gan , Donghao Jiang , Yuqi Wu , Youcheng Yin et al.
International Journal of Biological Macromolecules, 2019, ⟨10.1016/j.ijbiomac.2019.05.073⟩
Article dans une revue hal-02130096 v1

Corrigendum to “Caballeronia mineralivorans sp. nov., isolated from oak-Scleroderma citrinum mycorrhizosphere” [Syst. Appl. Microbiol. 40 (2017) 345–351]

S. Uroz , Phil M. Oger
Systematic and Applied Microbiology, 2019, 42 (3), pp.423-424. ⟨10.1016/j.syapm.2019.03.001⟩
Article dans une revue hal-02122345 v1
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Plant Symbionts Are Engineers of the Plant-Associated Microbiome

Stéphane Uroz , Pierre-Emmanuel Courty , Phil M. Oger
Trends in Plant Science, 2019, 24 (10), pp.905-916. ⟨10.1016/j.tplants.2019.06.008⟩
Article dans une revue hal-02334474 v1
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In Search for the Membrane Regulators of Archaea

Marta Salvador-Castell , Maxime Tourte , Phil M. Oger
International Journal of Molecular Sciences, 2019, 20 (18), pp.4434. ⟨10.3390/ijms20184434⟩
Article dans une revue hal-02283370 v1
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Biochemical characterization and mutational studies of the 8-oxoguanine DNA glycosylase from the hyperthermophilic and radioresistant archaeon Thermococcus gammatolerans

Likui Zhang , Yuting Li , Haoqiang Shi , Dai Zhang , Zhihui Yang et al.
Applied Microbiology and Biotechnology, 2019, ⟨10.1007/s00253-019-10031-w⟩
Article dans une revue hal-02283293 v1
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Biochemical characterization of a thermostable endonuclease V from the hyperthermophilic euryarchaeon Thermococcus barophilus Ch5

Yuxiao Wang , Likui Zhang , Xinyuan Zhu , Yuting Li , Haoqiang Shi et al.
International Journal of Biological Macromolecules, 2018, 117, pp.17-24. ⟨10.1016/j.ijbiomac.2018.05.155⟩
Article dans une revue hal-02001372 v1
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Complete Genome Sequences of 11 Type Species from the Thermococcus Genus of Hyperthermophilic and Piezophilic Archaea

Phil M. Oger
Genome Announcements, 2018, 6 (8)
Article dans une revue hal-02001367 v1

The Effect of Crowding on Protein Stability, Rigidity, and High Pressure Sensitivity in Whole Cells

M. Golub , N. Martinez , G. Michoud , J. Ollivier , M. Jebbar et al.
Langmuir, 2018, 34 (35), pp.10419-10425. ⟨10.1021/acs.langmuir.8b01240⟩
Article dans une revue hal-02001365 v1

Can a target zone safer than Lewinnek's safe zone be defined to prevent instability of total hip arthroplasties? Case-control study of 56 dislocated THA and 93 matched controls

Nicolas Reina , Sophie Putman , Romain Desmarchelier , El Hadi Sari Ali , Philippe Chiron et al.
Orthopaedics & Traumatology: Surgery & Research, 2017, 103 (5), pp. 657-661. ⟨10.1016/j.otsr.2017.05.015⟩
Article dans une revue hal-01587112 v1

700 MPa sample stick for studying liquid samples or solid-gas reactions down to 1.8 K and up to 550 K

Eddy Lelièvre-Berna , Bruno Demé , Julien Gonthier , Jean-Paul Gonzales , James Maurice et al.
Journal of Neutron Research, 2017, 19 (1-2), pp.77-84. ⟨10.3233/JNR-170044⟩
Article dans une revue hal-03930609 v1

Complete Genome Sequence of the Hyperthermophilic Piezophilic Archaeon Pyrococcus kukulkanii NCB100 Isolated from the Rebecca's Roost Hydrothermal Vent in the Guaymas Basin

Phil M. Oger , N. Callac , C. Oger-Desfeux , S. Hughes , B. Gillet et al.
Genome Announcements, 2017, 5 (7), ⟨10.1128/genomeA.01667-16⟩
Article dans une revue hal-02001357 v1

Coping with the pressure: Microbial adaptation to high hydrostatic pressure in deep sea hydrothermal vents

Phil M. Oger
Journal of Physics: Conference Series, 2017, 950, pp.032016. ⟨10.1088/1742-6596/950/3/032016⟩
Article dans une revue hal-02122369 v1
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Copper transporters are responsible for copper isotopic fractionation in eukaryotic cells

Jean-Loup Cadiou , Sylvain Pichat , Victor P. Bondanese , Alexandre Soulard , Toshiyuki Fujii et al.
Scientific Reports, 2017, 7, ⟨10.1038/srep44533⟩
Article dans une revue hal-01632761 v1

Epsilonproteobacteria dominate bacterial diversity at a natural tar seep

F. Lormieres , Phil M. Oger
Comptes Rendus. Biologies, 2017, 340 (4), pp.238-243. ⟨10.1016/j.crvi.2016.10.001⟩
Article dans une revue hal-02001356 v1

Contribution à l'inventaire des araignées de l'île Cavallo (archipel des Lavezzi, Corse-du-Sud), avec une argiope nouvelle pour la faune française : Argiope trifasciata (Forsskål, 1775) (Araneae, Araneidae)

Philippe Ponel , P. Oger , Yoann Poher , Frédéric Médail
Revue arachnologique, série 2, 2017, 4 (2), pp.2-4
Article dans une revue hal-03470516 v1

Caballeronia mineralivorans sp. nov., isolated from oak-Scleroderma citrinum mycorrhizosphere.

Stéphane Uroz , Phil M. Oger
Systematic and Applied Microbiology, 2017, 40 (6), pp.345-351. ⟨10.1016/j.syapm.2017.05.005⟩
Article dans une revue hal-01644024 v1

<em>Thermococcus piezophilus</em> sp. nov., a novel hyperthermophilic and piezophilic archaeon with a broad pressure range for growth, isolated from a deepest hydrothermal vent at the Mid-Cayman Rise

Cécile Dalmasso , Philippe Oger , Gwendoline Selva , Damien Courtine , Stéphane L’haridon et al.
Systematic and Applied Microbiology, 2016, 39 (7), pp.440-444. ⟨10.1016/j.syapm.2016.08.003⟩
Article dans une revue hal-02636723 v1
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High protein flexibility and reduced hydration water dynamics are key pressure adaptive strategies in prokaryotes

Nicolas Martinez , G. Michoud , A. Cario , J. Ollivier , Bruno Franzetti et al.
Scientific Reports, 2016, 6, ⟨10.1038/srep32816⟩
Article dans une revue hal-01427793 v1

Hypoxia induces copper stable isotope fractionation in hepatocellular carcinoma, in a HIF-independent manner

Victor Bondanese , Aline Lamboux , Mélanie Simon , Jérôme Lafont , Emmanuelle Albalat et al.
Metallomics, 2016, 8 (11), pp.1177-1184. ⟨10.1039/c6mt00102e⟩
Article dans une revue hal-02132068 v1

Erratum for Dalmasso et al., Complete Genome Sequence of the Hyperthermophilic and Piezophilic Archaeon Thermococcus piezophilus CDGST, Able To Grow under Extreme Hydrostatic Pressures

C. Dalmasso , Phil M. Oger , D. Courtine , M. Georges , K. Takai et al.
Genome Announcements, 2016, 4 (5)
Article dans une revue hal-02001333 v1

Medical applications of Cu, Zn, and S isotope effects

F. Albarede , P. Telouk , V. Balter , V. P. Bondanese , E. Albalat et al.
Metallomics, 2016, 8 (10), pp.1056-1070. ⟨10.1039/c5mt00316d⟩
Article dans une revue hal-02001326 v1
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Complete Genome Sequence of the Hyperthermophilic and Piezophilic Archaeon Thermococcus barophilus Ch5, Capable of Growth at the Expense of Hydrogenogenesis from Carbon Monoxide and Formate

Phil M. Oger , T. G. Sokolova , D. A. Kozhevnikova , E. A. Taranov , P. Vannier et al.
Genome Announcements, 2016, 4 (1), ⟨10.1128/genomeA.01534-15⟩
Article dans une revue hal-02001341 v1

Pyrococcus kukulkanii sp. nov., a hyperthermophilic, piezophilic archaeon isolated from a deep-sea hydrothermal vent

N. Callac , Phil M. Oger , F. Lesongeur , J. E. Rattray , P. Vannier et al.
International Journal of Systematic and Evolutionary Microbiology, 2016, 66 (8), pp.3142-9. ⟨10.1099/ijsem.0.001160⟩
Article dans une revue hal-02001330 v1
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Specific impacts of beech and Norway spruce on the structure and diversity of the rhizosphere and soil microbial communities

S. Uroz , P. Oger , E. Tisserand , A. Cebron , M. -P. Turpault et al.
Scientific Reports, 2016, 6 (1), pp.1-11. ⟨10.1038/srep27756⟩
Article dans une revue hal-01579579 v1
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Random mutagenesis of the hyperthermophilic archaeon Pyrococcus furiosus using in vitro mariner transposition and natural transformation

Natalia Guschinskaya , Romain Brunel , Maxime Tourte , Gina L. Lipscomb , Michael W. W. Adams et al.
Scientific Reports, 2016, 6, pp.36711. ⟨10.1038/srep36711⟩
Article dans une revue hal-01917847 v1
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Molecular chaperone accumulation as a function of stress evidences adaptation to high hydrostatic pressure in the piezophilic archaeon Thermococcus barophilus

A. Cario , M. Jebbar , A. Thiel , N. Kervarec , Phil M. Oger
Scientific Reports, 2016, 6, pp.29483. ⟨10.1038/srep29483⟩
Article dans une revue hal-02001331 v1

Genome expression of Thermococcus barophilus and Thermococcus kodakarensis in response to different hydrostatic pressure conditions

Pauline Vannier , Grégoire Michoud , Phil M. Oger , Viggó Þór Marteinsson , Mohamed Jebbar
Research in Microbiology, 2015, 166 (9), pp.717-725. ⟨10.1016/j.resmic.2015.07.006⟩
Article dans une revue hal-02122706 v1
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Classes of organic molecules targeted by a methanogenic microbial consortium grown on sedimentary rocks of various maturities

Margaux Meslé , Gilles Dromart , Frank Haeseler , Philippe Oger
Frontiers in Microbiology, 2015, 6, ⟨10.3389/fmicb.2015.00589⟩
Article dans une revue hal-01256322 v1

Microbial diversity and adaptation to high hydrostatic pressure in deep-sea hydrothermal vents prokaryotes.

Mohamed Jebbar , Bruno Franzetti , Eric Girard , Philippe Oger
Extremophiles, 2015, 19 (4), pp.721-40
Article dans une revue hal-01199266 v1

Restoration of the di-myo-inositol-phosphate pathway in the piezo-hyperthermophilic archaeon Thermococcus barophilus

Anaïs Cario , Alex Mizgier , Axel Thiel , Mohamed Jebbar , Phil M. Oger
Biochimie, 2015, 118, pp.286-293. ⟨10.1016/j.biochi.2015.05.011⟩
Article dans une revue hal-02122725 v1

Methanogenic microbial community of the Eastern Paris Basin: Potential for energy production from organic-rich shales

Margaux Meslé , Charlotte Periot , Gilles Dromart , Philippe Oger
International Journal of Coal Geology, 2015, 149, pp.67-76. ⟨10.1016/j.coal.2015.07.002⟩
Article dans une revue hal-01360887 v1

High hydrostatic pressure increases amino acid requirements in the piezo-hyperthermophilic archaeon Thermococcus barophilus

Anaïs Cario , Florence Lormières , Xiao Xiang , Phil M. Oger
Research in Microbiology, 2015, 166 (9), pp.710-716. ⟨10.1016/j.resmic.2015.07.004⟩
Article dans une revue hal-02122717 v1
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Membrane homeoviscous adaptation in the piezo-hyperthermophilic archaeon Thermococcus barophilus

Anaïs Cario , Vincent Grossi , Philippe Schaeffer , Philippe M. Oger
Frontiers in Microbiology, 2015, 6, pp.1152. ⟨10.3389/fmicb.2015.01152⟩
Article dans une revue hal-01366758 v1

Draft Genome Sequence of Burkholderia sp. Strain PML1(12), an Ectomycorrhizosphere-Inhabiting Bacterium with Effective Mineral-Weathering Ability

Stephane Uroz , Phil Oger
Genome Announcements, 2015, 3 (4), ⟨10.1128/genomeA.00798-15⟩
Article dans une revue hal-02916120 v1

La vie sous pression des microorganismes piézophiles

Phil M. Oger , Anaïs Cario
Biologie Aujourd'hui, 2014, 208 (3), pp.193-206. ⟨10.1051/jbio/2014023⟩
Article dans une revue istex hal-02122751 v1
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Deep sea microbes probed by incoherent neutron scattering under high hydrostatic pressure.

Judith Peters , Nicolas Martinez , Grégoire Michoud , Anaïs Cario , Bruno Franzetti et al.
Zeitschrift für Physikalische Chemie, 2014, 228, 10-12, pp.1121-1133. ⟨10.1515/zpch-2014-0547⟩
Article dans une revue hal-01149032 v1

Adaptation of the membrane in Archaea

Anaïs Cario , Phil M. Oger
Biophysical Chemistry, 2013, 183, pp.42-56. ⟨10.1016/j.bpc.2013.06.020⟩
Article dans une revue hal-02122759 v1

Microbial methanogenesis in subsurface oil and coal

Margaux Mesle , Gilles Dromart , Phil M. Oger
Research in Microbiology, 2013, 164 (9), pp.959-972. ⟨10.1016/j.resmic.2013.07.004⟩
Article dans une revue istex hal-02122787 v1

Biostimulation to identify microbial communities involved in methane generation in shallow, kerogen-rich shales

M. Meslé , C. Périot , G. Dromart , Phil M. Oger
Journal of Applied Microbiology, 2013, 114 (1), pp.55-70. ⟨10.1111/jam.12015⟩
Article dans une revue hal-02122792 v1

iGEM Europe 2013: Des gènes et des machines

Phil M. Oger , Corinne Dorel
Biofutur, 2013, 349, pp.50-51
Article dans une revue hal-02122782 v1

Correlation of the Abundance of Betaproteobacteria on Mineral Surfaces with Mineral Weathering in Forest Soils

C. Lepleux , M. Turpault , Phil M. Oger , P. Frey-Klett , S. Uroz
Applied and Environmental Microbiology, 2012, 78 (19), pp.7114-7119. ⟨10.1128/AEM.00996-12⟩
Article dans une revue hal-02122800 v1

Methanization of fossil fuel: a possible sustainable future energy source for mankind

Phil M. Oger
Fermentation, 2012, 1, pp.e110
Article dans une revue hal-02122818 v1

A novel bacteriophage morphotype with a ribbon-like structure at the tail extremity

Eric Prestel , Christophe Regeard , James Andrews , Philippe M. Oger , Michael Dubow
Research Journal of Microbiology, 2012, 7 (1), pp.75. ⟨10.3923/jm.2012.75.81⟩
Article dans une revue hal-00714242 v1

Distinct Ectomycorrhizospheres Share Similar Bacterial Communities as Revealed by Pyrosequencing-Based Analysis of 16S rRNA Genes

Stephane Uroz , P. Oger , E. Morin , P. Frey-Klett
Applied and Environmental Microbiology, 2012, 78 (8), pp. 3020-3024. ⟨10.1128/AEM.06742-11⟩
Article dans une revue hal-02916135 v1

Distinct Ectomycorrhizospheres Share Similar Bacterial Communities as Revealed by Pyrosequencing-Based Analysis of 16S rRNA Genes

Stéphane Uroz , P. Oger , Emmanuelle Morin , P. Frey-Klett
Applied and Environmental Microbiology, 2012, 78 (8), pp.3020 - 3024. ⟨10.1128/AEM.06742-11⟩
Article dans une revue hal-01268355 v1

Complete genome sequence of the thermophilic, piezophilic, heterotrophic bacterium Marinitoga piezophila KA3.

Susan Lucas , James Han , Alla Lapidus , Jan-Fang Cheng , Lynne A Goodwin et al.
Journal of Bacteriology, 2012, 194 (21), pp.5974-5. ⟨10.1128/JB.01430-12⟩
Article dans une revue hal-00773159 v1

Correlation of the Abundance of Betaproteobacteria on Mineral Surfaces with Mineral Weathering in Forest Soils

C. Lepleux , M. Turpault , P. Oger , P. Frey-Klett , Stephane Uroz
Applied and Environmental Microbiology, 2012, 78 (19), pp. 7114-7119. ⟨10.1128/AEM.00996-12⟩
Article dans une revue hal-02916134 v1

Des microbes repoussent les limites de la vie

Philippe M. Oger , Bruno Franzetti
Biofutur, 2012, 336, pp.36-39
Article dans une revue hal-00829758 v1

Pyrococcus yayanosii sp. nov.,the first obligate piezophilic hyperthermophilic archaeon isolated from a deep-sea hydrothermal vent.

Jean-Louis Birrien , Xiang Zeng , Mohamed Jebbar , Marie-Anne Cambon-Bonavita , Joël Quérellou et al.
International Journal of Systematic and Evolutionary Microbiology, 2011, Epub ahead of print. ⟨10.1099/ijs.0.024653-0⟩
Article dans une revue hal-00609785 v1

Complete Genome Sequence of the Obligate Piezophilic Hyperthermophilic Archaeon Pyrococcus yayanosii CH1

Xu Jun , Lupeng Liu , Minjuan Xu , Philippe Oger , Fengping Wang et al.
Journal of Bacteriology, 2011, 193 (16), pp.4297-4298. ⟨10.1128/JB.05345-11⟩
Article dans une revue insu-00683340 v1

Complete Genome Sequence of the Hyperthermophilic, Piezophilic, Heterotrophic, and Carboxydotrophic Archaeon Thermococcus barophilus MP

Pauline Vannier , Viggo Thor Marteinsson , Olafur Hedinn Fridjonsson , Philippe . Oger , Mohamed Jebbar
Journal of Bacteriology, 2011, 193 (6), pp.1481-1482. ⟨10.1128/JB.01490-10⟩
Article dans une revue insu-00683928 v1

Bacterial weathering and its contribution to nutrient cycling in temperate forest ecosystems

Stéphane Uroz , Philippe M. Oger , Cendrella Lepleux , Christelle Collignon , Pascale P. Frey-Klett et al.
Research in Microbiology, 2011, 162 (9), pp.820-831. ⟨10.1016/j.resmic.2011.01.013⟩
Article dans une revue insu-00682028 v1

Monitoring microbial redox transformations of metal and metalloid elements under high pressure using in situ X-ray absorption spectroscopy

Augustin Picard , Isabelle Daniel , D. Testemale , I. Kieffer , P. Bleuet et al.
Geobiology, 2011, 9 (2), pp.196-204. ⟨10.1111/j.1472-4669.2010.00270.x⟩
Article dans une revue hal-00659828 v1

Fractionation of Stable Zinc Isotopes in the Zinc Hyperaccumulator Arabidopsis halleri and Nonaccumulator Arabidopsis petraea

Anne-Marie Aucour , Sylvain Pichat , M. R. Macnair , Philippe M. Oger
Environmental Science and Technology, 2011, 45 (21), pp.9212-9217. ⟨10.1021/es200874x⟩
Article dans une revue insu-00683310 v1

Complete Genome Sequence of the Hyperthermophilic Archaeon Thermococcus sp Strain AM4, Capable of Organotrophic Growth and Growth at the Expense of Hydrogenogenic or Sulfidogenic Oxidation of Carbon Monoxide

Philippe M. Oger , Tatyana G. Sokolova , Darya A. Kozhevnikova , Nikolay A. Chernyh , Douglas H. Bartlett et al.
Journal of Bacteriology, 2011, 193 (24), pp.7019-7020. ⟨10.1128/JB.06259-11⟩
Article dans une revue insu-00682014 v1
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The many ways of coping with pressure

Philippe Oger , Mohamed Jebbar
Research in Microbiology, 2010, 161 (10), pp.799-809. ⟨10.1016/j.resmic.2010.09.017⟩
Article dans une revue hal-00618586 v1

In situ Raman and X-ray spectroscopies to monitor microbial activities under high hydrostatic pressure

Philippe M. Oger , Isabelle Daniel , Aude Picard
Annals of the New York Academy of Sciences, 2010, 1189, pp.113-120. ⟨10.1111/j.1749-6632.2009.05176.x⟩
Article dans une revue istex hal-00681774 v1

Experiments and geochemical modelling of CO(2) sequestration by olivine: Potential, quantification

Bruno Garcia , V. Beaumont , Erwan Perfetti , V. Rouchon , D. Blanchet et al.
Applied Geochemistry, 2010, 25 (9), pp.1383-1396. ⟨10.1016/j.apgeochem.2010.06.009⟩
Article dans une revue istex insu-00677011 v1

Pyrococcus CH1, an obligate piezophilic hyperthermophile extending the upper pressure-temperature limits for life

X. Zeng , J.-L. Birrien , Y. Fouquet , G. Cherkashov , M. Jebbar et al.
The International Society of Microbiologial Ecology Journal, 2009, pp.1 - 4
Article dans une revue hal-00406501 v1

The S -Adenosyl- l -Homocysteine Hydrolase Gene ahcY of Agrobacterium radiobacter K84 Is Required for Optimal Growth, Antibiotic Production, and Biocontrol of Crown Gall Disease

Ramón Penyalver , Phil M. Oger , Shengchang Su , Belén Alvarez , Carmina Salcedo et al.
Molecular Plant-Microbe Interactions, 2009, 22 (6), pp.713-724. ⟨10.1094/MPMI-22-6-0713⟩
Article dans une revue hal-02122845 v1

Quorum Sensing and Quorum Quenching: The Yin and Yang of Bacterial Communication

Stéphane Uroz , Yves Dessaux , Phil M. Oger
ChemBioChem, 2009, 10 (2), pp.205-216. ⟨10.1002/cbic.200800521⟩
Article dans une revue (article de synthèse) istex hal-02122861 v1

Micro-X-ray absorption near edge structure as a suitable probe to monitor live organisms.

Philippe M. Oger , Isabelle Daniel , Alexandre Simionovici , A. Picard
Spectrochimica Acta Part B: Atomic Spectroscopy, 2008, 63(4), pp.512-517. ⟨10.1016/j.sab.2007.12.013⟩
Article dans une revue istex hal-00341800 v1
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A Rhodococcus qsdA-Encoded Enzyme Defines a Novel Class of Large-Spectrum Quorum-Quenching Lactonases

Stéphane S. Uroz , Phil M. Oger , Emilie Chapelle , Marie-Thérèse Adeline , Denis Faure et al.
Applied and Environmental Microbiology, 2008, 74 (5), pp.1357-1366. ⟨10.1128/AEM.02014-07⟩
Article dans une revue hal-02665934 v1

A Rhodococcus qsdA-encoded enzyme defines a novel class of large-spectrum quorum-quenching lactonases.

S. Uroz , Philippe M. Oger , E. Chapelle , M.-T. Adeline , D. Faure et al.
Applied and Environmental Microbiology, 2008, 74, pp.1357-1366
Article dans une revue hal-00342712 v1

In situ monitoring by quantitative Raman spectroscopy of alcoholic fermentation by Saccharomyces cerevisiae under high pressure.

A. Picard , Isabelle Daniel , Gilles Montagnac , Philippe M. Oger
Extremophiles, 2007, 11, pp.445-452
Article dans une revue hal-00341399 v1

In situ monitoring of alcohol fermentation by Saccharomyces cerevisiae under high pressure by quantitative Raman spectroscopy.

A. Picard , Isabelle Daniel , Gilles Montagnac , Philippe M. Oger
Extremophiles, 2007, 11, pp.445-452
Article dans une revue hal-00342705 v1

A sensitive pressure sensor for diamond anvil cell experiments up to 2 GPa: FluoSpheres®

Aude Picard , Philippe M. Oger , Isabelle Daniel , Hervé Cardon , Gilles Montagnac et al.
Journal of Applied Physics, 2006, 100, ⟨10.1063/1.2234821⟩
Article dans une revue hal-00093036 v1

AHL-mediated quorum-sensing in Azospirillum: an exception rather than a rule.

L. Vial , C. Cuny , K. Gluchoff-Fiasson , G. Comte , Philippe M. Oger et al.
Microbial ecology, 2006, 58, pp.155-168
Article dans une revue hal-00342700 v1

N-acyl homoserine lactones are degraded via an amidolytic activity in Comamonas sp. strain D1.

Stéphane Uroz , Yves Dessaux , Philippe M. Oger , Siri Ram Chhabra , Miguel Cámara et al.
Archives of Microbiology, 2006, 187 (3), pp.249-256. ⟨10.1007/s00203-006-0186-5⟩
Article dans une revue istex hal-00119105 v1

Development of a low-pressure diamond anvil cell and analytical tools to monitor microbial activities in situ under controlled P and T.

Philippe M. Oger , Isabelle Daniel , A. Picard
Biochimica et Biophysica Acta Proteins and Proteomics, 2006, 1764(3), pp.434-442
Article dans une revue hal-00341802 v1

Origin of life and biochemistry under high pressure-conditions.

Isabelle Daniel , Philippe M. Oger , R. Winter
Chemical Society Reviews, 2006, 35, pp.858-875
Article dans une revue hal-00342697 v1

N-acyl-homoserine lactone-mediated quorum-sensing in Azospirillum: an exception rather than a rule.

Ludovic Vial , Caroline Cuny , Katia Gluchoff-Fiasson , Gilles Comte , Phil M. Oger et al.
FEMS Microbiology Ecology, 2006, 58, pp.155-168. ⟨10.1111/j.1574-6941.2006.00153.x⟩
Article dans une revue hal-00119123 v1
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Development of a low-pressure diamond anvil cell and analytical tools to monitor microbial activities in situ under controlled P and T

Philippe M. Oger , Isabelle Daniel , Aude Picard
BBA - Biochimica et Biophysica Acta, 2006, 1764, pp.434-442. ⟨10.1016/j.bbapap.2005.11.009⟩
Article dans une revue hal-00093586 v1

Origins of life and biochemistry under high-pressure conditions.

Isabelle Daniel , Philippe M. Oger , R. Winter
Chemical Society Reviews, 2006, 35(10), pp.858-875
Article dans une revue hal-00341807 v1

N-Acylhomoserine lactone quorum-sensing molecules are modified and degraded by Rhodococcus erythropolis W2 by both amidolytic and novel oxidoreductase activities.

Stéphane Uroz , Siri Ram Chhabra , Miguel Cámara , Paul Williams , Philippe M. Oger et al.
Microbiology, 2005, 151 (10), pp.3313-3322. ⟨10.1099/mic.0.27961-0⟩
Article dans une revue hal-00019097 v1

Engineering root exudation of Lotus towards the production of two novel carbon compounds leads to the selection of distinct microbial populations in the rhizosphere.

Philippe M. Oger , H. Mansouri , X. Nesme , Y. Dessaux
Microbiol. Ecol., 2004, 47 (1), pp.96-103. ⟨10.1007/s00248-003-2012-9⟩
Article dans une revue istex hal-00122258 v1

A Highly Selectable and Highly Transferable Ti Plasmid to Study Conjugal Host Range and Ti Plasmid Dissemination in Complex Ecosystems

S. Teyssier-Cuvelle , Phil M. Oger , Christophe Mougel , K. Groud , S. Farrand et al.
Microbial ecology, 2004, 48 (1), pp.10-18. ⟨10.1007/s00248-003-2023-6⟩
Article dans une revue istex hal-02123026 v1

In situ micro X-ray absorption near edge structure study of microbiologically reduced selenite (SeO32−)

Phil M. Oger , I. Daniel , B. Cournoyer , A. Simionovici
Spectrochimica Acta Part B: Atomic Spectroscopy, 2004, 59 (10-11), pp.1681-1686. ⟨10.1016/j.sab.2004.07.021⟩
Article dans une revue istex hal-02123018 v1

Novel bacteria degrading N-acylhomoserine lactones and their use as quenchers of quorum-sensing-regulated functions of plant-pathogenic bacteria.

Stéphane Uroz , Cathy d'Angelo-Picard , Aurélien Carlier , Miena Elasri , Carine Sicot et al.
Microbiology, 2003, 149 (8), pp.1981-1989. ⟨10.1099/mic.0.26375-0⟩
Article dans une revue hal-00135468 v1

Agrobacterium is a definable genus of the family Rhizobiaceae

S. Farrand , Peter van Berkum , Phil M. Oger
International Journal of Systematic and Evolutionary Microbiology, 2003, 53 (5), pp.1681-1687. ⟨10.1099/ijs.0.02445-0⟩
Article dans une revue hal-02123030 v1

Engineering bacterial competitiveness and persistence in the phytosphere.

Michael A Savka , Yves Dessaux , Philippe M. Oger , Silvia Rossbach
Molecular Plant-Microbe Interactions, 2002, 15 (9), pp.866-74
Article dans une revue hal-00145850 v1

Importance of the O-antigen, core-region and lipid A of rhizobial lipopolysaccharides for the induction of systemic resistance in potato to Globodera pallida

Martina Reitz , Phil M. Oger , Andreas A Meyer , Karsten Niehaus , Stephen Farrand et al.
Nematology, 2002, 4 (1), pp.73 - 79. ⟨10.1163/156854102760082221⟩
Article dans une revue istex hal-01759659 v1

Engineered rhizosphere: the trophic bias generated by opine-producing plants is independent of the opine type, the soil origin, and the plant species.

Hounayda Mansouri , Annik Petit , Phil Oger , Yves Dessaux
Applied and Environmental Microbiology, 2002, 68 (5), pp.2562-6. ⟨10.1128/AEM.68.5.2562-2566.2002⟩
Article dans une revue hal-00145331 v1

Two Opines Control Conjugal Transfer of an Agrobacterium Plasmid by Regulating Expression of Separate Copies of the Quorum-Sensing Activator Gene traR

Phil M. Oger , S. Farrand
Journal of Bacteriology, 2002, 184 (4), pp.1121-1131. ⟨10.1128/jb.184.4.1121-1131.2002⟩
Article dans une revue hal-02123037 v1

Co-evolution of the agrocinopine opines and the agrocinopine-mediated control of TraR, the quorum-sensing activator of the Ti plasmid conjugation system

Phil M. Oger , Stephen Farrand
Molecular Microbiology, 2001, 41 (5), pp.1173-1185. ⟨10.1046/j.1365-2958.2001.02584.x⟩
Article dans une revue hal-02123045 v1

Acyl-homoserine lactone production is more common among plant-associated Pseudomonas spp. than among soilborne Pseudomonas spp.

M. Elasri , S. Delorme , P. Lemanceau , G. Stewart , B. Laue et al.
Applied and Environmental Microbiology, 2001, 67 (3), pp.1198-209. ⟨10.1128/AEM.67.3.1198-1209.2001⟩
Article dans une revue hal-00150154 v1

Iron-Binding Compounds from Agrobacterium spp.: Biological Control Strain Agrobacterium rhizogenes K84 Produces a Hydroxamate Siderophore

R. Penyalver , Phil M. Oger , M. Lopez , S. Farrand
Applied and Environmental Microbiology, 2001, 67 (2), pp.654-664. ⟨10.1128/AEM.67.2.654-664.2001⟩
Article dans une revue hal-02123047 v1

Acyl-homoserine lactone production is more common among plant-associated Pseudomonas spp. than among soilborne Pseudomonas spp

M. Elasri , S. Delorme , Philippe P. Lemanceau , G. Stewart , B. Laue et al.
Applied and Environmental Microbiology, 2001, 67 (3), pp.1198-1209
Article dans une revue hal-02671516 v1

A second T-region of the soybean-supervirulent chrysopine-type Ti plasmid pTiChry5, and construction of a fully disarmed vir helper plasmid.

K. Palanichelvam , P. Oger , S. J. Clough , C. Cha , A. F. Bent et al.
Molecular Plant-Microbe Interactions, 2000, 13 (10), pp.1081-91
Article dans une revue hal-00165069 v1

Effect of crop rotation and soil cover on alteration of the soil microflora generated by the culture of transgenic plants producing opines.

P. Oger , H. Mansouri , Y. Dessaux
Molecular Ecology, 2000, 9 (7), pp.881-90. ⟨10.1046/j.1365-294x.2000.00940.x⟩
Article dans une revue istex hal-00165030 v1

The Bases of Crown Gall Tumorigenesis

J. Zhu , Phil M. Oger , B. Schrammeijer , J. Hooykaas , S. Farrand et al.
Journal of Bacteriology, 2000, 182 (14), pp.3885-3895. ⟨10.1128/JB.182.14.3885-3895.2000⟩
Article dans une revue hal-02123051 v1
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Validity, sensitivity and resolution limit of the PCR-RFLP analysis of the rrs (16S rRNA gene) as a tool to identify soil-borne and plant-associated bacterial populations

Philippe Oger , Yves Dessaux , A. Petit , L. Gardan , Charles Manceau et al.
Genetics Selection Evolution, 1998, 30 (suppl. 1), pp.S311-S321
Article dans une revue hal-02698473 v1
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Validity, sensitivity and resolution limit of the PCR-RFLP analysis of the rrs (16S rRNA gene) as a tool to identify soil-borne and plant-associated bacterial populations

Phil Oger , Yves Dessaux , Annick Petit , Louis Gardan , Charles Manceau et al.
Genetics Selection Evolution, 1998, 30 (Suppl), pp.S311-S321
Article dans une revue hal-00894248 v1

Octopine-type Ti plasmids code for a mannopine-inducible dominant-negative allele of traR, the quorum-sensing activator that regulates Ti plasmid conjugal transfer

Phil M. Oger , Kun-Soo Kim , Rebecca Sackett , Kevin Piper , Stephen Farrand
Molecular Microbiology, 1998, 27 (2), pp.277-288. ⟨10.1046/j.1365-2958.1998.00671.x⟩
Article dans une revue hal-02123057 v1

Genetically engineered plants producing opines alter their biological environment

Phil M. Oger , Annik Petit , Yves Dessaux
Nature Biotechnology, 1997, 15 (4), pp.369-372. ⟨10.1038/nbt0497-369⟩
Article dans une revue hal-02123062 v1

A simple technique for direct transformation and regeneration of the diploid legume species Lotus japonicus

Phil M. Oger , Annik Petit , Yves Dessaux
Plant Science, 1996, 116 (2), pp.159-168. ⟨10.1016/0168-9452(96)04391-9⟩
Article dans une revue istex hal-02123064 v1

The use of digoxigenin-lebbelled probes to detect DNA sequences specific for plant pathogenic bacteria

Y. Dessaux , Miena Elasri , E. Glickmann , Phil M. Oger , Annick Petit et al.
Cellular and Molecular Biology, 1995, 41 (7), pp.993-943
Article dans une revue hal-02123170 v1

Chasing the myth of high pressure adaptation in piezophilic organisms

Philippe Oger
12th International Conference on High Pressure Bioscience and Biotechnology, The International Association of High Pressure Bioscience and Biotechnology (HPBB), Oct 2024, Lyon, France
Communication dans un congrès hal-04902307 v1
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Gene deletions in the lipid synthesis pathway of P. furiosus reveal novel membrane lipids and enzymatic promiscuity

Margot Saracco , P. Schaeffer , P. Adam , Barbara Bourgade , Florence Ruaudel et al.
Molecular Biology of Archaea (MBoA), Jun 2024, Palaiseau (Ecole Polytechnique), France
Communication dans un congrès hal-04884976 v1

Deciphering the relative contribution of polar lipids in the adaptation to extreme environmental conditions

Margot Saracco , Lucie Devaux , Anael Galot , P. Schaeffer , Stéphane Fontanay et al.
XXII GEM Conference - Membranes: Structure, Dynamics and Function, French Membrane Group, Mar 2023, Autrans, France
Communication dans un congrès hal-04903235 v1

Adaptation to the extreme in polyextremophilic archaea

Philippe Oger
JDN 2023 - 31ème journées de la Diffusion Neutronique, Société Française de la Neutronique (SFN), Oct 2023, Erquy, France
Communication dans un congrès hal-04902322 v1

The Legacy of Pyrococcus abyssi : from 1 to 100 Thermococcales genomes

Violette Da Cunha , Catherine Badel , Phil M. Oger , Loïs Maignien , Ghislaine Magdelenat et al.
The 20th MicroScope anniversary - Journée Thématique, Violette Da Cunha; Patrick Forterre, Sep 2023, Évry-Courcouronnes, France
Communication dans un congrès hal-04330663 v1

Membrane adaptation in the hyperthermophilic and piezophilic archaeon Thermococcus barophilus

Philippe Oger
11th Conference on High Pressure Bioscience and Biotechnology, University of Copenhagen, Dept of Food Sciences, Jul 2022, Copenhagen, Denmark
Communication dans un congrès hal-04898877 v1

New lipids, new membranes and extraordinary routes to adapt to the extremes

Philippe Oger
Gordon Research Conference on Organic Geochemistry, GRC, Jul 2022, Horlderness, MA, United States
Communication dans un congrès hal-04896579 v1

Redefining the archaea Thermococcales order with the biogeographic repartition and comparative genomic analysis of more than 100 isolates.

Violette Da Cunha , Philippe Oger , Damien Courtine , Loïs Maignien , Mohamed Jebbar et al.
2022 International Workshop on Deep-Sea Microbiology,, Mohamed Jebbar, Sep 2022, Plouzane, France
Communication dans un congrès hal-04358652 v1

Membrane adaptation in the hyperthermophilic and piezophilic archaeon Thermococcus barophilus

Philippe Oger
The 11th International Conference on High Pressure Bioscience and Biotechnology, The International Association of High Pressure Bioscience and Biotechnology (HPBB), Jul 2022, Copengague, Denmark
Communication dans un congrès hal-04902329 v1

Exploring the behavior of a novel membrane ultrastructure involved in high pressure adaptation in Archaea

Marta Salvador-Castell , Philippe Oger , Bruno Demé , Maksym Golub , Roland Winter et al.
11th International Conference on High Pressure Bioscience and Biotechnology, International Association of High Pressure Bioscience and Biotechnology, Jul 2022, Copenhagen, Denmark
Communication dans un congrès hal-04903138 v1

Unravelling the mechanisms of adaptation to high pressure in proteins

Antonino Caliò , Judith Peters , Philippe Oger
11th International Conference on High Pressure Bioscience and Biotechnology, The Intenational Association of High Pressure Bioscience and Biotechnology, Jul 2022, Copenhagen, France
Communication dans un congrès hal-04902408 v1

Unraveling the mechanisms of adaptation to high pressure in proteins

Antonino Caliò , Philippe Oger , Judith Peters
QENS/WINS 2022, A. Arbe and J. Colmenero, May 2022, San Sebastian, Spain
Communication dans un congrès hal-04903185 v1

Adaptation to the extreme in polyextremophilic archaea

Philippe Oger
7th Workshop Deep-Sea Microbiology, LM2E, UMR6197, Sep 2022, Brest, France
Communication dans un congrès hal-04896597 v1
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Uncommon glycerol monoalkyl glycerol tetraethers (GMGT) support membrane adaption in the archaeon Pyrococcus furiosus

Maxime Tourte , P. Schaeffer , Vincent Grossi , Philippe Oger
30th International Meeting on Organic Geochemistry (IMOG), The European Association of Organic Geochemistry, Sep 2021, Montpellier, France. pp.1-2, ⟨10.3997/2214-4609.202134189⟩
Communication dans un congrès hal-04895713 v1
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Molecular bases of proteome adaptation to high-pressure in extremophilic archaea

Antonino Caliò , Judith Peters , Philippe Oger
The 11th International Conference on High Pressure Bioscience and Biotechnology, University of Copenhaguen, Dept of Food Sciences, Jul 2021, Copenhagen (Online conference), France
Communication dans un congrès hal-04895697 v1
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Apolar polyisoprenoids located in the midplane of the bilayer regulate the response of an archaeal-like membrane to high temperature and pressure

Josephine Loricco , Marta Salvador-Castell , Bruno Demé , Judith Peters , Philippe Oger
The 11th International Conference on High Pressure Bioscience and Biotechnology (HPBB2021), University of Copenhaguen, Département de Sciences alimentaires, Jul 2021, Copenhague (Online conference), France
Communication dans un congrès hal-04895688 v1

Design of a fibrous composite material for the retention of heavy metals

Alvaro Diaz-Mendoza , Yoann Louis , Philippe Oger , Marie Vandesteene , Adeline Crohare et al.
GFP, Nov 2021, LYON, France
Communication dans un congrès hal-05041721 v1

Design of a fibrous composite material for the retention of heavy metals

Alvaro Diaz-Mendoza , Yoann Louis , Philippe . Oger , Marie Vandesteene , Adeline Crohare et al.
MACRO 2020, May 2021, JEJU, South Korea
Communication dans un congrès hal-05041656 v1

High-hydrostatic pressure adaptation resolved by combined physiological and biophysical approaches in piezophilic archaea

Philippe Oger
57th EHPRG Meeting on High Pressure Science and Technology Information, The European High Pressure Research Group, Sep 2019, Prague, Czech Republic, Czech Republic
Communication dans un congrès hal-04895162 v1
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Effects of alcohol addition on a fatty acid membrane

Loreto Misuraca , Bruno Demé , Judith Peters , Philippe Oger
Bilayer at ILL, Institut Laue-Langevin, Dec 2019, Grenoble, France
Communication dans un congrès hal-04895237 v1
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Apolar lipids, the membrane adaptation toolbox of extremophiles

Marta Salvador-Castell , Maksym Golub , Nelli Erwin , Bruno Demé , Nicholas Brooks et al.
Bilayers at the ILL, Institut Laue-Langevin, Dec 2019, Grenoble, France
Communication dans un congrès hal-04895225 v1

Apolar lipids, the molecular toolbox for membrane adaptation to extreme conditions in Archaea

Philippe Oger
Joint meeting of the DFG Research Unit FOR 1979 and the "9th International Meeting of Biomolecules under Pressure (IMBP)", Roland Winter, Sep 2019, Dortmund Germany, Germany
Communication dans un congrès hal-04895179 v1

PROTOMEMBRANES AT THE ORIGIN OF LIFE

Loreto Misuraca , Bruno Demé , Judith Peters , Philippe Oger
European Conference of Neutron Scattering (ECNS), European Neutron Scattering Association & Kurchatov Institute, Jun 2019, Saint-Petersbourg, Russia
Communication dans un congrès hal-04895273 v1

Contribution of metagenomics to the study of mineral weathering bacterial communities in forest soils

Stéphane S. Uroz , Marc Buée , Aurélie Cébron , Wietse de Boer , Pascale P. Frey-Klett et al.
MEM days (Meta’omics of the microbial ecosystems), 2014, Paris, France
Communication dans un congrès hal-02796164 v1

Combination of culture-independent and dependent approach reveals positive correlation between abundance of Beta-proteobacteria and mineral weathering in nutrient-poor forest soil

Cendrella Lepleux , Marie-Pierre M.-P. Turpault , P. Oger , Pascale P. Frey-Klett , Stéphane S. Uroz
14. International Symposium on Microbial Ecology (ISME14) "The Power of the Small", Aug 2012, Coppenague, Danemark
Communication dans un congrès hal-02745200 v1

Identification et suivi des bactéries et gènes impliqués dans l’altération des minéraux et la fertilité des sols forestiers

Stéphane S. Uroz , Marie-Pierre M.-P. Turpault , P. Oger , Christelle Collignon , Wietse de Boer et al.
Colloque FRB 2011, Sep 2011, Montpellier, France
Communication dans un congrès hal-02744770 v1
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Validity, sensitivity and resolution limit of the PCR-RFLP analysis of the rrs (16S rRNA gene) as a tool to identify soil-borne and plant-associated bacterial populations

Philippe Oger , Yves Dessaux , A. Petit , L. Gardan , Charles Manceau et al.
Colloque BRG/USTL. Méthodologies de gestion et de conservation des ressources génétiques, Oct 1997, Lille, France
Communication dans un congrès hal-02840574 v1

High-Throughput Screening of Fosmid Libraries for Increased Identification of Novel N-Acyl Homoserine Lactone Degrading Enzymes

Stéphane Uroz , Phil M. Oger
Microbial Environmental Genomics (MEG), 2605, Springer US, pp.227-240, 2023, Methods in Molecular Biology, ⟨10.1007/978-1-0716-2871-3_12⟩
Chapitre d'ouvrage hal-04683698 v1

Metabarcoding of the Three Domains of Life in Aquatic Saline Ecosystems

Delphine Melayah , Zélia Bontemps , Maxime Bruto , Agnès Nguyen , Phil M. Oger et al.
Génomique environnementale microbienne (MEG), 2605, Springer US, pp.17-35, 2023, Methods in Molecular Biology, ⟨10.1007/978-1-0716-2871-3_2⟩
Chapitre d'ouvrage anses-04559404 v1
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High-pressure Adaptation of Extremophiles and Biotechnological Applications

Marta Salvador-Castell , Phil M. Oger , Judith Peters
Physiological and Biotechnological aspects of extremophiles, Elsevier, pp.105-122, 2020, 978-0-12-818322-9. ⟨10.1016/C2018-0-03860-8⟩
Chapitre d'ouvrage hal-02122331 v1

High-pressure adaptation of extremophiles and biotechnological applications

M. Salvador-Castell , P. Oger , J. Peters
Physiological and Biotechnological Aspects of Extremophiles, Elsevier, pp.105-122, 2020, ⟨10.1016/B978-0-12-818322-9.00008-3⟩
Chapitre d'ouvrage hal-03930698 v1
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Vivre sous pression dans la biosphère profonde

Phil M. Oger
101 secrets de l'ADN, 4, CNRS Editions, pp.151-153, 2019, 9782271123237
Chapitre d'ouvrage hal-02122323 v1

Probing the Structure and Dynamics of Cells, Cell Components and Endogenous Nanoparticles Under Extreme Conditions with Neutrons

Judith Peters , Ruth Prassl , Phil M. Oger
Biological, Physical and Technical Basics of Cell Engineering, Springer Singapore, pp.401-420, 2018
Chapitre d'ouvrage hal-02122309 v1

Screening for N-AHSL-Based-Signaling Interfering Enzymes

Stéphane Uroz , Phil M. Oger
METAGENOMICS: METHODS AND PROTOCOLS, 1539 (Chapter 18), Editions Springer, 15 p., 2017, Methods in Molecular Biology, 978-1-4939-6689-9. ⟨10.1007/978-1-4939-6691-2_18⟩
Chapitre d'ouvrage hal-01688921 v1

Homeoviscous Adaptation of Membranes in Archaea

Phil M. Oger
High Pressure Bioscience, pp.383-403, 2015
Chapitre d'ouvrage hal-02122094 v1

Petroleum: from formation to microbiology.

Bernard Ollivier , Jean Borgomano , Philippe Oger
Microbial life in the deep biosphere, De Gruyter, pp.161 -185, 2014
Chapitre d'ouvrage hal-00989881 v1

Screening for N-AHSL-Based-Signaling Interfering Enzymes

Stéphane Uroz , Phil M. Oger
Metagenomics. Methods in Molecular Biology (Methods and Protocols), pp.203-217, 2010
Chapitre d'ouvrage hal-02122828 v1

Piezophilic Prokaryotes

Daniel Prieur , D. Bartlett , C. Kato , Ph. Oger , Mohamed Jebbar
Philippe Sébert. Comparative High Pressure Biology, Science Publishers, pp.285-322, 2010
Chapitre d'ouvrage hal-00620691 v1

Impact of the deep biosphere on CO2 storage performance

Bénédicte Ménez , Sébastien Dupraz , Emmanuelle Gérard , François Guyot , Céline Rommevaux et al.
Geotechnologien Science Reports, 9, pp.150-163, 2007, French-German Symposium on Geological storage of CO2
Chapitre d'ouvrage hal-02122968 v1

Métrologie : calibrants de pression pour la gamme 0 - 2 GPA

Phil M. Oger , Jean-Claude Chervin , Olivier Grasset , Jean-Marie Perrier-Cornet
Outils et méthodes pour la recherche à haute pression, Réseau CNRS des Hautes Pressions, pp.1-30, 2005
Chapitre d'ouvrage hal-02123176 v1

Agrobacterium-mediated transformation of Lotus species

Phil Oger , Yves Dessaux
P.K. Jaiwal, R.P. Singh. Applied Genetics of Leguminosae Biotechnology, Springer, pp.255-281, 2004, Focus on Biotechnology Vol. 10B
Chapitre d'ouvrage hal-00134557 v1

Quorum-sensing system of Agrobacterium plasmids: Analysis and utility

Stephen Farrand , Yinping Qin , Phil M. Oger
Methods in Enzymology, pp.452-484, 2002
Chapitre d'ouvrage hal-02123042 v1