Ralf Koebnik

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Libre accès
168
Documents

Publications

Publications

Large- and small-scale population structure of Xanthomonas oryzae pv. oryzicola, a bacterial pathogen of rice

Anne Sicard , Sara Carpenter , Amadou Diallo , Shivranjani Baruah , Cheick Tekete et al.
Applied and Environmental Microbiology, 2025, ⟨10.1128/aem.01121-25⟩
Article dans une revue hal-05248727 v1
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Evolutionary and Epidemiological Insights from Historical and Modern Genomes of <i>Xanthomonas oryzae</i> pv. <i>oryzicola</i>, the Causal Agent of Bacterial Leaf Streak of Rice

Mathilde Hutin , Sara Carpenter , Shivrajani Baruah , Paola Campos , Karine Boyer et al.
Molecular Plant-Microbe Interactions, 2024, 37, pp.814 - 818. ⟨10.1094/mpmi-05-24-0062-sc⟩
Article dans une revue hal-04868054 v1
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Celebrating the 20th anniversary of the first Xanthomonas genome sequences – how genomics revolutionized taxonomy, provided insight into the emergence of pathogenic bacteria, enabled new fundamental discoveries and helped developing novel control measures – a perspective from the French network on Xanthomonads

Ralf Koebnik , Sophie Cesbron , Nicolas W. G. Chen , Marion Fischer-Le Saux , Mathilde Hutin et al.
Peer Community Journal, 2024, 4, pp.e19. ⟨10.24072/pcjournal.385⟩
Article dans une revue ird-04483657 v1
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Draft genome sequence of <i>Xanthomonas arboricola</i> pv. pruni PVCT 262.1 isolated from <i>Prunus dulcis</i> in italy

Giulio Dimaria , Alexandros Mosca , Marcella Russo , Jaime Cubero , Joël F Pothier et al.
Microbiology Resource Announcements, 2024, 13 (7), pp.e00273-24. ⟨10.1128/mra.00273-24⟩
Article dans une revue hal-04629914 v1
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Comparative transcriptomics reveals a highly polymorphic Xanthomonas HrpG virulence regulon

Thomas Quiroz Monnens , Brice Roux , Sebastien Cunnac , Erika Charbit , Sébastien Carrere et al.
BMC Genomics, 2024, 25, pp.777. ⟨10.1186/s12864-024-10684-6⟩
Article dans une revue hal-04670942 v1
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A Community-Curated DokuWiki Resource on Diagnostics, Diversity, Pathogenicity and Genetic Control of Xanthomonads

Joana Costa , Joël F Pothier , Eran Bosis , Jens Boch , Roland Kölliker et al.
Molecular Plant-Microbe Interactions, 2024, 37 (3), pp.166-353. ⟨10.1094/MPMI-11-23-0184-FI⟩
Article dans une revue ird-04483595 v1
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PM 7/44 (2) Xanthomonas citri pv. citri and Xanthomonas citri pv. aurantifolii

Olivier Pruvost , Isabelle Robène , Aude Chabirand , Ralf Koebnik , Vittoria Catara et al.
EPPO Bulletin, 2023, 53 (1), pp.62-96. ⟨10.1111/epp.12913⟩
Article dans une revue ird-04498414 v1
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Integrating Science on Xanthomonas and Xylella for Integrated Plant Disease Management

Joana Costa , Joël F Pothier , Jens Boch , Emilio Stefani , Ralf Koebnik
Microorganisms, 2023, 11 (1), pp.6. ⟨10.3390/microorganisms11010006⟩
Article dans une revue ird-03967356 v1
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High genomic plasticity and unique features of Xanthomonas translucens pv. graminis revealed through comparative analysis of complete genome sequences

Florian Goettelmann , Ralf Koebnik , Veronica Roman-Reyna , Bruno Studer , Roland Kölliker
BMC Genomics, 2023, 24 (1), pp.741. ⟨10.1186/s12864-023-09855-8⟩
Article dans une revue ird-04483681 v1
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Complete genome sequencing of three clade-1 xanthomonads reveals genetic determinants for a lateral flagellin and the biosynthesis of coronatine-like molecules in Xanthomonas

Chloé Peduzzi , Angeliki Sagia , Daiva Burokienė , Ildikó Katalin Nagy , Marion Fischer-Le Saux et al.
Phytopathology, 2023, 113 (7), pp.1185-1191. ⟨10.1094/phyto-10-22-0373-sc⟩
Article dans une revue hal-03978256 v1
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CRISPRi in Xanthomonas demonstrates functional convergence of transcription activator‐like effectors in two divergent pathogens

Carlos Andrés Zárate-Chaves , Corinne Audran , César Augusto Medina Culma , Aline Escalon , Stéphanie Javegny et al.
New Phytologist, In press, 238 (4), pp.1593-1604. ⟨10.1111/nph.18808⟩
Article dans une revue hal-04058189 v1
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A minisatellite-based MLVA for deciphering the global epidemiology of the bacterial cassava pathogen Xanthomonas phaseoli pv. manihotis

Leidy Rache , Laurence Blondin , Paula Diaz Tatis , Carolina Flores , Andrea Camargo et al.
PLoS ONE, 2023, 18 (5), pp.e0285491. ⟨10.1371/journal.pone.0285491⟩
Article dans une revue hal-04292499 v1

Comparative Genomics Identifies Conserved and Variable TAL Effectors in African Strains of the Cotton Pathogen Xanthomonas citri pv. malvacearum

Alvaro Luis Perez Quintero , Luis Rodriguez-R , Sara Cuesta-Morrondo , Eliška Hakalová , Daniela Betancurt-Anzola et al.
Phytopathology, 2023, 113 (8), pp.1387-1393. ⟨10.1094/PHYTO-12-22-0477-SC⟩
Article dans une revue hal-04276735 v1
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Assembling highly repetitive Xanthomonas TALomes using Oxford Nanopore sequencing

Annett Erkes , René P Grove , Milena Žarković , Sebastian Krautwurst , Ralf Koebnik et al.
BMC Genomics, 2023, 24, pp.151. ⟨10.1186/s12864-023-09228-1⟩
Article dans une revue hal-04532327 v1
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Clustered Regularly Interspaced Short Palindromic Repeats in Xanthomonas citri—Witnesses to a Global Expansion of a Bacterial Pathogen over Time

Ninon Bellanger , Alexis Dereeper , Ralf Koebnik
Microorganisms, 2022, 10 (9), ⟨10.3390/microorganisms10091715⟩
Article dans une revue hal-03813531 v1

Complete Genome Sequence Resource for Xanthomonas translucens pv. undulosa MAI5034, a Wheat Pathogen from Uruguay

Felipe Clavijo , Claudia Barrera , Aleksander Benčič , Valentina Croce , Jonathan Jacobs et al.
Phytopathology, 2022, 112 (9), pp.2036-2039. ⟨10.1094/phyto-01-22-0025-a⟩
Article dans une revue hal-03717518 v1
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Phenotypic and Molecular-Phylogenetic Analyses Reveal Distinct Features of Crown Gall-Associated Xanthomonas Strains

Hamzeh Mafakheri , S. Mohsen Taghavi , Sadegh Zarei , Touraj Rahimi , Mohammad Sadegh Hasannezhad et al.
Microbiology Spectrum, 2022, 10 (1), 18 p. ⟨10.1128/spectrum.00577-21⟩
Article dans une revue hal-03576592 v1

Taxonomic Refinement of Xanthomonas arboricola

Sadegh Zarei , S. Mohsen Taghavi , Touraj Rahimi , Hamzeh Mafakheri , Neha Potnis et al.
Phytopathology, 2022, 118 (8), pp.1630-1639. ⟨10.1094/phyto-12-21-0519-r⟩
Article dans une revue hal-03623139 v1
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Complete Genome Assemblies of All Xanthomonas translucens Pathotype Strains Reveal Three Genetically Distinct Clades

Florian Goettelmann , Veronica Roman-Reyna , Sébastien Cunnac , Jonathan Jacobs , Claude Bragard et al.
Frontiers in Microbiology, 2022, 12, pp.817815. ⟨10.3389/fmicb.2021.817815⟩
Article dans une revue hal-03626316 v1

Xanthomonas bonasiae sp. nov. and Xanthomonas youngii sp. nov., isolated from crown gall tissues

Hamzeh Mafakheri , S. Mohsen Taghavi , Sadegh Zarei , Perrine Portier , Ivica Dimkić et al.
International Journal of Systematic and Evolutionary Microbiology, 2022, 72 (6), pp.005418. ⟨10.1099/ijsem.0.005418⟩
Article dans une revue hal-03728267 v1
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Complete Genome Sequence of Xanthomonas campestris pv. campestris SB80, a Race 4 Strain Isolated from White Head Cabbage in Turkey

Songül Erken Meral , Shaheen Bibi , Carlos Andrés Díaz Rodríguez , Jelena Menković , Adriana Bernal et al.
Microbiology Resource Announcements, 2022, 11 (3), pp.e00022-22. ⟨10.1128/mra.00022-22⟩
Article dans une revue hal-03626321 v1
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Editorial: Population and comparative genomics of plant pathogenic bacteria

Sujan Timilsina , Erica M Goss , Ralf Koebnik , Neha Potnis , Jeffrey Jones
Frontiers in Microbiology, 2022, 13, ⟨10.3389/fmicb.2022.1012034⟩
Article dans une revue hal-03813550 v1
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Xanthomonas hortorum – beyond gardens: Current taxonomy, genomics, and virulence repertoires

Nay C Dia , Lucas Moriniere , Bart Cottyn , Eduardo Bernal , Jonathan M Jacobs et al.
Molecular Plant Pathology, 2022, 23 (5), pp.597-621. ⟨10.1111/mpp.13185⟩
Article dans une revue hal-03559066 v1
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Development of two loop-mediated isothermal amplification (LAMP) genomics-informed diagnostic protocols for rapid detection of Pantoea species on rice

Kossi Kini , Issa Wonni , Drissa Silué , Ralf Koebnik
MethodsX, 2021, 8, pp.101216. ⟨10.1016/j.mex.2021.101216⟩
Article dans une revue hal-03626200 v1
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Integrating science on Xanthomonadaceae for sustainable plant disease management in Europe

Joana Costa , Joël Pothier , Jens Boch , Emilio Stefani , Marie-Agnès Jacques et al.
Molecular Plant Pathology, 2021, 22 (12), pp.1461-1463. ⟨10.1111/mpp.13150⟩
Article dans une revue hal-03521764 v1

Genomics-Informed Multiplex PCR Scheme for Rapid Identification of Rice-Associated Bacteria of the Genus Pantoea

Kossi Kini , Raoul Agnimonhan , Rachelle Dossa , Drissa Silué , Ralf Koebnik
Plant Disease, 2021, 105 (9), pp.2389-2394. ⟨10.1094/PDIS-07-20-1474-RE⟩
Article dans une revue hal-03510899 v1

The complete genome sequence of Xanthomonas theicola, the causal agent of canker on tea plants, reveals novel secretion systems in clade-1 xanthomonads

Ralf Koebnik , Daiva Burokiene , Claude Bragard , Christine Chang , Marion Fischer-Le Saux et al.
Phytopathology, 2021, 111 (4), pp.611-616. ⟨10.1094/PHYTO-07-20-0273-SC⟩
Article dans une revue hal-02976163 v1
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An atypical class of non-coding small RNAs is produced in rice leaves upon bacterial infection

Ganna Reshetnyak , Jonathan M Jacobs , Florence Auguy , Coline Sciallano , Lisa Claude et al.
Scientific Reports, 2021, 11 (1), ⟨10.1038/s41598-021-03391-9⟩
Article dans une revue hal-03514038 v1
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Molecular Epidemiology of Xanthomonas euvesicatoria Strains from the Balkan Peninsula Revealed by a New Multiple-Locus Variable-Number Tandem-Repeat Analysis Scheme

Taca Vancheva , Nevena Bogatzevska , Penka Moncheva , Sasa Mitrev , Christian Vernière et al.
Microorganisms, 2021, 9 (3), pp.536. ⟨10.3390/microorganisms9030536⟩
Article dans une revue hal-03205487 v1
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Trends in Molecular Diagnosis and Diversity Studies for Phytosanitary Regulated Xanthomonas

Vittoria Catara , Jaime Cubero , Joël Pothier , Eran Bosis , Claude Bragard et al.
Microorganisms, 2021, 9 (4), pp.862. ⟨10.3390/microorganisms9040862⟩
Article dans une revue (article de synthèse) hal-03217200 v1
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Phylogenetic distribution and evolutionary dynamics of nod and T3SS genes in the genus Bradyrhizobium

Albin Teulet , Djamel Gully , Zoe Rouy , Alicia Camuel , Ralf Koebnik et al.
Microbial Genomics, 2020, 6 (9), ⟨10.1099/mgen.0.000407⟩
Article dans une revue hal-03127250 v1
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The Rice DNA-Binding Protein ZBED Controls Stress Regulators and Maintains Disease Resistance After a Mild Drought

Paola A. Zuluaga , Przemyslaw Bidzinski , Emilie Chanclud , Aurélie Ducasse , Bastien Cayrol et al.
Frontiers in Plant Science, 2020, 11, pp.1265. ⟨10.3389/fpls.2020.01265⟩
Article dans une revue hal-02927839 v1
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Design of a new multiplex PCR assay for rice pathogenic bacteria detection and its application to infer disease incidence and detect co-infection in rice fields in Burkina Faso

Martine Bangratz , Issa Wonni , Kossi Kini , Moussa Sondo , Christophe Brugidou et al.
PLoS ONE, 2020, 15 (4), pp.e0232115. ⟨10.1371/journal.pone.0232115⟩
Article dans une revue hal-03626192 v1
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High-Quality Genome Resource of Xanthomonas hyacinthi Generated via Long-Read Sequencing

Stephen P. Cohen , Emily K. Luna , Jillian M. Lang , Janet Ziegle , Christine Chang et al.
Plant Disease, 2020, pp.PDIS-11-19-2393. ⟨10.1094/PDIS-11-19-2393-A⟩
Article dans une revue (data paper) hal-02624813 v1

Genome Resource of Barley Bacterial Blight and Leaf Streak Pathogen Xanthomonas translucens pv. translucens strain UPB886

Verónica Roman-Reyna , Emily Luna , Céline Pesce , Taca Vancheva , Christine Chang et al.
Plant Disease, 2020, 104 (1), pp.13-15. ⟨10.1094/PDIS-05-19-1103-A⟩
Article dans une revue hal-03626188 v1
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Genome resources of three west African strains of Pantoea ananatis causing bacterial blight and grain discoloration of rice

Kossi Kini , Pierre Lefeuvre , Lucie Poulin , Drissa Silué , Ralf Koebnik
Phytopathology, 2020, 110 (9), pp.1500-1502. ⟨10.1094/PHYTO-03-20-0091-A⟩
Article dans une revue hal-03626195 v1
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Repeated gain and loss of a single gene modulates the evolution of vascular plant pathogen lifestyles

Gluck-Thaler, Emile , A. Cerruti , Alvaro L. Pérez-Quintero , Roman-Reyna, Veronica , Madhavan, Vishnu et al.
Science Advances , 2020, 6 (46), ⟨10.1126/sciadv.abc4516⟩
Article dans une revue hal-03177564 v1

Ebb and flow of vascular pathogenesis through repeated gain

E. Gluck-Thaler , Aude Cerutti , A.L. Perez Quintero , C. Pesce , Alain Jauneau et al.
Molecular Plant-Microbe Interactions, 2019, 32 (10S), p. S1.22
Article dans une revue hal-05177410 v1

First Report of Bacterial Blight of Peony Caused by Xanthomonas hortorum in Ohio

T. Klass , J. Long , J. Summers , V. Roman-Reyna , R. Koebnik et al.
Plant Disease, 2019, 103 (11), pp.2940. ⟨10.1094/PDIS-05-19-1123-PDN⟩
Article dans une revue hal-03626180 v1

Addressing the New Global Threat of Xylella fastidiosa

R. Almeida , L. de La Fuente , R. Koebnik , J. Lopes , S. Parnell et al.
Phytopathology, 2019, 109 (2), pp.172-174. ⟨10.1094/PHYTO-12-18-0488-FI⟩
Article dans une revue hal-03626149 v1
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A semi-selective medium to isolate and identify bacteria of the genus Pantoea

Kossi Kini , Rachelle Dossa , Bernadin Dossou , Mariame Mariko , Ralf Koebnik et al.
Journal of General Plant Pathology, 2019, 85 (6), pp.424-427. ⟨10.1007/s10327-019-00862-w⟩
Article dans une revue hal-03626176 v1
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CRISPR elements provide a new framework for the genealogy of the citrus canker pathogen <i>Xanthomonas citri</i> pv. <i>citri</i>

Kwanho Jeong , Alejandra Muñoz-Bodnar , Nathalia Arias Rojas , Lucie Poulin , Luis Miguel Rodriguez-R et al.
BMC Genomics, 2019, 20 (1), pp.1-19. ⟨10.1186/s12864-019-6267-z⟩
Article dans une revue hal-02403788 v1
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A TonB-dependent transporter is required for secretion of protease PopC across the bacterial outer membrane

Nuria Gómez-Santos , Timo Glatter , Ralf Koebnik , Magdalena Anna Świątek-Połatyńska , Lotte Søgaard-Andersen
Nature Communications, 2019, 10 (1), pp.1360. ⟨10.1038/s41467-019-09366-9⟩
Article dans une revue hal-03626151 v1

An Optimized Microsatellite Scheme for Assessing Populations of Xanthomonas phaseoli pv. manihotis

Leidy Rache , Laurence Blondin , Carolina Flores , Cesar Trujillo , Boris Szurek et al.
Phytopathology, 2019, 109 (5), pp.859-869. ⟨10.1094/PHYTO-06-18-0210-R⟩
Article dans une revue hal-02617945 v1
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A Pathovar of Xanthomonas oryzae Infecting Wild Grasses Provides Insight Into the Evolution of Pathogenicity in Rice Agroecosystems

Jillian Lang , Alvaro Pérez-Quintero , Ralf Koebnik , Elysa Ducharme , Soungalo Sarra et al.
Frontiers in Plant Science, 2019, 10, pp.507. ⟨10.3389/fpls.2019.00507⟩
Article dans une revue hal-03626158 v1

Molecular Typing Reveals High Genetic Diversity of Xanthomonas translucens Strains Infecting Small-Grain Cereals in Iran

Moein Khojasteh , S. Mohsen Taghavi , Pejman Khodaygan , Habiballah Hamzehzarghani , Gongyou Chen et al.
Applied and Environmental Microbiology, 2019, 85 (20), ⟨10.1128/AEM.01518-19⟩
Article dans une revue hal-03626171 v1
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Isolation of atypical wheat-associated xanthomonads in Algeria

Bahria Khenfous-Djebari , Marion Fischer-Le Saux , Mohamed Kerkoud , Traki Benhassine , Zouazi Bouznad et al.
Phytopathologia Mediterranea, 2019, 58 (3), pp.497-506. ⟨10.13128/Phyto-10855⟩
Article dans une revue hal-02971104 v1
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The rhizobial type III effector ErnA confers the ability to form nodules in legumes

Albin Teulet , Nicolas Busset , Joël Fardoux , Djamel Gully , Clémence Chaintreuil et al.
Proceedings of the National Academy of Sciences of the United States of America, 2019, 116 (43), pp.21758-21768. ⟨10.1073/pnas.1904456116⟩
Article dans une revue hal-02318403 v1

Pathogenicity and phylogenetic analysis of Clavibacter michiganensis strains associated with tomato plants in Iran

Ebrahim Osdaghi , Muhammad Sajjad Ansari , Seyed Mohsen Taghavi , Sina Zarei , Ralph Koebnik et al.
Plant Pathology, 2018, 67 (4), pp.957-970. ⟨10.1111/ppa.12801⟩
Article dans une revue hal-02623769 v1
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Functional analysis of African Xanthomonas oryzae pv. oryzae TALomes reveals a new susceptibility gene in bacterial leaf blight of rice

Tuan Tran , Alvaro Pérez-Quintero , Issa Wonni , Sara Carpenter , Yanhua Yu et al.
PLoS Pathogens, 2018, 14 (6), pp.e1007092. ⟨10.1371/journal.ppat.1007092⟩
Article dans une revue hal-03626132 v1

Multilocus sequence analysis reveals a novel phylogroup of Xanthomonas euvesicatoria pv. perforans causing bacterial spot of tomato in Iran

Ebrahim Osdaghi , Seyed Mohsen Taghavi , Ralf Koebnik , Jay Ram Lamichhane
Plant Pathology, 2018, 67 (7), pp.1601-1611. ⟨10.1111/ppa.12864⟩
Article dans une revue hal-02621197 v1
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Enterobacter cloacae, an Emerging Plant-Pathogenic Bacterium Affecting Chili Pepper Seedlings

Tanahiri García-González , Hilda Karina Sáenz-Hidalgo , Hilda Victoria Silva-Rojas , Carlos Morales-Nieto , Taca Vancheva et al.
Plant Pathology Journal, 2018, 34 (1), pp.1-10. ⟨10.5423/PPJ.OA.06.2017.0128⟩
Article dans une revue hal-03626126 v1
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Efficient enrichment cloning of TAL effector genes from Xanthomonas

T.T. Tran , H. Doucouré , M. Hutin , L.M. Jaimes Niño , B. Szurek et al.
MethodsX, 2018, 5, pp.1027-1032. ⟨10.1016/j.mex.2018.08.014⟩
Article dans une revue hal-03626143 v1
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Horizontal gene transfer plays a major role in the pathological convergence of Xanthomonas lineages on common bean

Nicolas Chen , Laurana Serres-Giardi , Mylène Ruh , Martial Briand , Sophie Bonneau et al.
BMC Genomics, 2018, 19 (1), 20 p. ⟨10.1186/s12864-018-4975-4⟩
Article dans une revue hal-02627510 v1
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Functional and Genome Sequence-Driven Characterization of tal Effector Gene Repertoires Reveals Novel Variants With Altered Specificities in Closely Related Malian Xanthomonas oryzae pv. oryzae Strains

Hinda Doucouré , Alvaro Pérez-Quintero , Ganna Reshetnyak , Cheick Tekete , Florence Auguy et al.
Frontiers in Microbiology, 2018, 9, pp.1657. ⟨10.3389/fmicb.2018.01657⟩
Article dans une revue hal-03626138 v1
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Transcriptome and proteome analysis reveal new insight into proximal and distal responses of wheat to foliar infection by Xanthomonas translucens

Daniel Garçia Seco , Marco Chiapello , Marcella Bracale , Céline Pesce , Paolo Bagnaresi et al.
Scientific Reports, 2017, 7 (1), pp.10157. ⟨10.1038/s41598-017-10568-8⟩
Article dans une revue hal-03626122 v1
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Comparative Genomics Identifies a Novel Conserved Protein, HpaT, in Proteobacterial Type III Secretion Systems that Do Not Possess the Putative Translocon Protein HrpF

Céline Pesce , Jonathan Jacobs , Edwige Berthelot , Marion Perret , Taca Vancheva et al.
Frontiers in Microbiology, 2017, 8, ⟨10.3389/fmicb.2017.01177⟩
Article dans une revue hal-03626112 v1

First Report of a New Bacterial Leaf Blight of Rice Caused by Pantoea ananatis and Pantoea stewartii in Benin

K. Kini , R. Agnimonhan , O. Afolabi , B. Milan , B. Soglonou et al.
Plant Disease, 2017, 101 (1), pp.242-242. ⟨10.1094/PDIS-06-16-0940-PDN⟩
Article dans une revue hal-03626087 v1

First Report of a New Bacterial Leaf Blight of Rice Caused by Pantoea ananatis and Pantoea stewartii in Togo

K. Kini , R. Agnimonhan , O. Afolabi , B. Soglonou , D. Silué et al.
Plant Disease, 2017, 101 (1), pp.241. ⟨10.1094/PDIS-06-16-0939-PDN⟩
Article dans une revue hal-03626078 v1

Characterization of the Xanthomonas translucens Complex Using Draft Genomes, Comparative Genomics, Phylogenetic Analysis, and Diagnostic LAMP Assays

Paul Langlois , Jacob Snelling , John Hamilton , Claude Bragard , Ralf Koebnik et al.
Phytopathology, 2017, 107 (5), pp.519-527. ⟨10.1094/PHYTO-08-16-0286-R⟩
Article dans une revue hal-03626106 v1
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Targeted promoter editing for rice resistance to Xanthomonas oryzae pv. oryzae reveals differential activities for SWEET14 -inducing TAL effectors

Servane Blanvillain-Baufumé , Maik Reschke , Montserrat Solé , Florence Auguy , Hinda Doucoure et al.
Plant Biotechnology Journal, 2017, 15 (3), pp.306-317. ⟨10.1111/pbi.12613⟩
Article dans une revue hal-03626092 v1
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High-Quality Draft Genome Sequence of Curtobacterium sp. Strain Ferrero

Ebrahim Osdaghi , Natalia Forero Serna , Stéphanie Bolot , Marion Fischer-Le Saux , Marie-Agnès Jacques et al.
Genome Announcements, 2017, 5 (48), pp.e01378-17. ⟨10.1128/genomeA.01378-17⟩
Article dans une revue hal-01905579 v1
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Effector Mimics and Integrated Decoys, the Never-Ending Arms Race between Rice and Xanthomonas oryzae

Paola Zuluaga Cruz , Boris Szurek , Ralf Koebnik , Thomas Kroj , Jean-Benoit Morel
Frontiers in Plant Science, 2017, 8, pp.1-4. ⟨10.3389/fpls.2017.00431⟩
Article dans une revue hal-01605934 v1

Using Ecology, Physiology, and Genomics to Understand Host Specificity in Xanthomonas

Marie-Agnès Jacques , Matthieu Arlat , Alice Boulanger , Tristan Boureau , Sébastien Carrère et al.
Annual Review of Phytopathology, 2016, 54 (1), pp.163-187. ⟨10.1146/annurev-phyto-080615-100147⟩
Article dans une revue hal-05056356 v1
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Ectopic activation of the rice NLR heteropair RGA4/RGA5 confers resistance to bacterial blight and bacterial leaf streak diseases

Mathilde Hutin , Stella Cesari , Véronique Chalvon , Corinne Michel , Tuan Tu Tran et al.
The Plant Journal, 2016, 88 (1), pp.43-55. ⟨10.1111/tpj.13231⟩
Article dans une revue hal-02637573 v1
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AnnoTALE: bioinformatics tools for identification, annotation and nomenclature of TALEs from Xanthomonas genomic sequences

Jan Grau , Maik Reschke , Annett Erkes , Jana Streubel , Richard Morgan et al.
Scientific Reports, 2016, 6 (1), pp.21077. ⟨10.1038/srep21077⟩
Article dans une revue hal-03625304 v1
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Whole-Genome Sequences of Xanthomonas euvesicatoria Strains Clarify Taxonomy and Reveal a Stepwise Erosion of Type 3 Effectors

Jeri D. Barak , Taca Vancheva , Pierre Lefeuvre , Jeffrey B. Jones , Sujan Timilsina et al.
Frontiers in Plant Science, 2016, 7, pp.1805. ⟨10.3389/fpls.2016.01805⟩
Article dans une revue hal-03625317 v1
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High-Quality Draft Genome Sequences of Two Xanthomonas Pathotype Strains Infecting Aroid Plants

I. Robène , Stéphanie S. Bolot , Olivier Pruvost , Matthieu Arlat , Laurent Noel et al.
Genome Announcements, 2016, 4 (5), pp.e00902-16. ⟨10.1128/genomeA.00902-16⟩
Article dans une revue hal-02629928 v1

Using Ecology, Physiology, and Genomics to Understand Host Specificity in Xanthomonas

Marie-Agnès Jacques , Matthieu Arlat , Alice Boulanger , Tristan Boureau , Sébastien Carrère et al.
Annual Review of Phytopathology, 2016, 54 (1), pp.163-187. ⟨10.1146/annurev-phyto-080615-100147⟩
Article dans une revue (article de synthèse) hal-03383508 v1

First Report of Bacterial Leaf Blight of Rice Caused by Xanthomonas oryzae pv. oryzae in Benin

O. Afolabi , R. Amoussa , M. Bilé , A. Oludare , V. Gbogbo et al.
Plant Disease, 2016, 100 (2), pp.515-515. ⟨10.1094/PDIS-07-15-0821-PDN⟩
Article dans une revue hal-03625298 v1
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Draft Genome Sequence ofXanthomonas translucenspv. graminis Pathotype Strain CFBP 2053

Céline Pesce , Stéphanie Bolot , Edwige Berthelot , Claude Bragard , Sebastien Cunnac et al.
Genome Announcements, 2015, 3 (5), pp.e01174-15. ⟨10.1128/genomeA.01174-15⟩
Article dans une revue hal-01594261 v1
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Draft Genome Sequences of Two Xanthomonas euvesicatoria Strains from the Balkan Peninsula

Taca Vancheva , Pierre Lefeuvre , Nevena Bogatzevska , Penka Moncheva , Ralf Koebnik
Genome Announcements, 2015, 3 (1), pp.e01528-14. ⟨10.1128/genomeA.01528-14⟩
Article dans une revue hal-03625220 v1
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Draft Genome Sequences of Two Xanthomonas vesicatoria Strains from the Balkan Peninsula

Taca Vancheva , Nevena Bogatzevska , Penka Moncheva , Pierre Lefeuvre , Ralf Koebnik
Genome Announcements, 2015, 3 (1), pp.e01558-14. ⟨10.1128/genomeA.01558-14⟩
Article dans une revue hal-03625226 v1
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Comparative genomics of a cannabis pathogen reveals insight into the evolution of pathogenicity in Xanthomonas

Jonathan M. Jacobs , Céline Pesce , Pierre Lefeuvre , Ralf Koebnik
Frontiers in Plant Science, 2015, 6, pp.431. ⟨10.3389/fpls.2015.00431⟩
Article dans une revue hal-03625231 v1
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High-Quality Draft Genome Sequence of the Xanthomonas translucens pv. cerealis Pathotype Strain CFBP 2541.

Céline Pesce , Stéphanie Bolot , Sébastien Cunnac , Perrine Portier , Marion Le Saux et al.
Genome Announcements, 2015, 3 (1), ⟨10.1128/genomeA.01574-14⟩
Article dans une revue hal-01209993 v1

A knowledge-based molecular screen uncovers a broad-spectrum OsSWEET14 resistance allele to bacterial blight from wild rice

Mathilde Hutin , Francois Sabot , Alain Ghesquière , Ralf Koebnik , Boris Szurek
The Plant Journal, 2015, 84 (4), pp.694-703. ⟨10.1111/tpj.13042⟩
Article dans une revue hal-03219869 v1
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Genomics and transcriptomics of Xanthomonas campestris species challenge the concept of core type III effectome.

Brice Roux , Stéphanie Bolot , Endrick Guy , Nicolas Denancé , Martine Lautier et al.
BMC Genomics, 2015, 16 (1), pp.975. ⟨10.1186/s12864-015-2190-0⟩
Article dans une revue hal-01455988 v1

Confirmation of Bacterial Leaf Streak of Rice Caused by Xanthomonas oryzae pv. oryzicola in Vietnam

T. Tran , N. Nga , P. Ngan , N. Hong , B. Szurek et al.
Plant Disease, 2015, 99 (12), pp.1853-1853. ⟨10.1094/PDIS-03-15-0289-PDN⟩
Article dans une revue hal-03625273 v1

New Multilocus Variable-Number Tandem-Repeat Analysis Tool for Surveillance and Local Epidemiology of Bacterial Leaf Blight and Bacterial Leaf Streak of Rice Caused by Xanthomonas oryzae

L. Poulin , P. Grygiel , M. Magne , L. Gagnevin , L. M. Rodriguez-R et al.
Applied and Environmental Microbiology, 2015, 81 (2), pp.688-698. ⟨10.1128/AEM.02768-14⟩
Article dans une revue hal-03625189 v1
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A MLVA genotyping scheme for global surveillance of the citrus pathogen Xanthomonas citri pv. citri suggests a worldwide geographical expansion of a single genetic lineage

Olivier Pruvost , Maxime Magne , Karine Boyer , Alice Leduc , Christophe Tourterel et al.
PLoS ONE, 2014, 9 (6), pp.e98129. ⟨10.1371/journal.pone.0098129⟩
Article dans une revue hal-01456735 v1

First Report of Xanthomonas oryzae pv. oryzicola Causing Bacterial Leaf Streak of Rice in Uganda

O. Afolabi , B. Milan , L. Poulin , J. Ongom , B. Szurek et al.
Plant Disease, 2014, 98 (11), pp.1579-1579. ⟨10.1094/PDIS-07-14-0745-PDN⟩
Article dans une revue hal-03625164 v1

Comparative proteomics reveal new HrpX-regulated proteins of Xanthomonas oryzae pv. oryzae

Guillaume Robin , Erika Ortiz , Boris Szurek , Jean-Paul Brizard , Ralf Koebnik
Journal of Proteomics, 2014, 97, pp.256-264. ⟨10.1016/j.jprot.2013.04.010⟩
Article dans une revue istex hal-03624821 v1

Analysis of Xanthomonas oryzae pv. oryzicola Population in Mali and Burkina Faso Reveals a High Level of Genetic and Pathogenic Diversity

I. Wonni , B. Cottyn , L. Detemmerman , S. Dao , L. Ouedraogo et al.
Phytopathology, 2014, 104 (5), pp.520-531. ⟨10.1094/PHYTO-07-13-0213-R⟩
Article dans une revue hal-03624866 v1

First Report of Xanthomonas oryzae pv. oryzicola Causing Bacterial Leaf Streak of Rice in Burundi

O. Afolabi , B. Milan , R. Amoussa , R. Koebnik , L. Poulin et al.
Plant Disease, 2014, 98 (10), pp.1426-1426. ⟨10.1094/PDIS-05-14-0504-PDN⟩
Article dans une revue hal-03625154 v1
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The Xanthomonas Ax21 protein is processed by the general secretory system and is secreted in association with outer membrane vesicles

Ofir Bahar , Rory Pruitt , Dee Dee Luu , Benjamin Schwessinger , Arsalan Daudi et al.
PeerJ, 2014, 2, pp.e242. ⟨10.7717/peerj.242⟩
Article dans une revue hal-03624834 v1
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Population typing of the causal agent of cassava bacterial blight in the Eastern Plains of Colombia using two types of molecular markers

César Trujillo , Nathalia Arias-Rojas , Lucie Poulin , César Medina , Anibal Tapiero et al.
BMC Microbiology, 2014, 14 (1), pp.161. ⟨10.1186/1471-2180-14-161⟩
Article dans une revue hal-03624881 v1
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Draft Genome Sequence of the Flagellated Xanthomonas fuscans subsp. fuscans Strain CFBP 4884

A. Indiana , M. Briand , Matthieu Arlat , Lionel Gagnevin , R. Koebnik et al.
Genome Announcements, 2014, 2 (5), pp.e00966-14. ⟨10.1128/genomeA.00966-14⟩
Article dans une revue hal-01134880 v1

Confirmation of Bacterial Leaf Streak Caused by Xanthomonas oryzae pv. oryzicola on Rice in Madagascar

L. Poulin , H. Raveloson , M. Sester , L.-M. Raboin , D. Silué et al.
Plant Disease, 2014, 98 (10), pp.1423-1423. ⟨10.1094/PDIS-02-14-0132-PDN⟩
Article dans une revue hal-03625143 v1
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Draft Genome Sequence of Xanthomonas axonopodis pv. allii Strain CFBP 6369.

Lionel Gagnevin , Stéphanie Bolot , J L Gordon , Olivier Pruvost , Christian Vernière et al.
Genome Announcements, 2014, 2 (4), ⟨10.1128/genomeA.00727-14⟩
Article dans une revue hal-01209994 v1
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Genome mining reveals the genus Xanthomonas to be a promising reservoir for new bioactive non-ribosomally synthesized peptides

Monique Royer , Ralf Koebnik , Melanie Marguerettaz , Valerie Barbe , Guillaume P. Robin et al.
BMC Genomics, 2013, 14, ⟨10.1186/1471-2164-14-658⟩
Article dans une revue hal-01209938 v1
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Genome sequence of Xanthomonas fuscans subsp. fuscans strain 4834-R reveals that flagellar motility is not a general feature of xanthomonads

Armelle Darrasse , Sebastien Carrere , Valérie Barbe , Tristan Boureau , Mario L. Arrieta-Ortiz et al.
BMC Genomics, 2013, 14, pp.761--790. ⟨10.1186/1471-2164-14-761⟩
Article dans une revue hal-01199326 v1

TALE1 from Xanthomonas axonopodis pv. manihotis acts as a transcriptional activator in plant cells and is important for pathogenicity in cassava plants

Luisa Castiblanco , Juliana Gil , Alejandro Rojas , Daniela Osorio , Sonia Gutiérrez et al.
Molecular Plant Pathology, 2013, 14 (1), pp.84-95. ⟨10.1111/j.1364-3703.2012.00830.x⟩
Article dans une revue hal-03624152 v1
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Draft Genome Sequence of the Xanthomonas cassavae Type Strain CFBP 4642.

Stéphanie S. Bolot , Alejandra Munoz Bodnar , Sébastien Cunnac , Erika Ortiz , Boris Szurek et al.
Genome Announcements, 2013, 1 (4), ⟨10.1128/genomeA.00679-13⟩
Article dans une revue hal-02642222 v1

Identification of non-TAL effectors in Xanthomonas oryzae pv. oryzae Chinese strain 13751 and analysis of their role in the bacterial virulence

Shuai Zhao , Wei-Lan Mo , Fan Wu , Wei Tang , Ji-Liang Tang et al.
World Journal of Microbiology and Biotechnology, 2013, 29 (4), pp.733-744. ⟨10.1007/s11274-012-1229-5⟩
Article dans une revue istex hal-03624159 v1

Five phylogenetically close rice SWEET genes confer TAL effector‐mediated susceptibility to Xanthomonas oryzae pv. oryzae

Jana Streubel , Céline Pesce , Mathilde Hutin , Ralf Koebnik , Jens Boch et al.
New Phytologist, 2013, 200 (3), pp.808-819. ⟨10.1111/nph.12411⟩
Article dans une revue hal-03624174 v1
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High-Quality Draft Genome Sequence of Xanthomonas alfalfae subsp. alfalfae Strain CFBP 3836.

Marie Agnes Jacques , Stéphanie S. Bolot , Erika Charbit , Armelle Darrasse , Martial Briand et al.
Genome Announcements, 2013, 1 (6), ⟨10.1128/genomeA.01035-13⟩
Article dans une revue hal-02649259 v1
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High-Quality Draft Genome Sequences of Xanthomonas axonopodis pv. glycines Strains CFBP 2526 and CFBP 7119.

Armelle Darrasse , Stéphanie S. Bolot , Laurana Serres Giardi , Erika Charbit , Tristan Boureau et al.
Genome Announcements, 2013, 1 (6), ⟨10.1128/genomeA.01036-13⟩
Article dans une revue hal-02648487 v1
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An Improved Method for TAL Effectors DNA-Binding Sites Prediction Reveals Functional Convergence in TAL Repertoires of Xanthomonas oryzae Strains

Alvaro Pérez-Quintero , Luis Rodriguez-R , Alexis Dereeper , Camilo López , Ralf Koebnik et al.
PLoS ONE, 2013, 8 (7), pp.e68464. ⟨10.1371/journal.pone.0068464⟩
Article dans une revue hal-03624166 v1
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High-Quality Draft Genome Sequences of Two Xanthomonas citri pv. malvacearum Strains.

Sébastien Cunnac , Stéphanie S. Bolot , Natalia Forero Serna , Erika Ortiz , Boris Szurek et al.
Genome Announcements, 2013, 1 (4), ⟨10.1128/genomeA.00674-13⟩
Article dans une revue hal-02643147 v1
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Genomic survey of pathogenicity determinants and VNTR markers in the cassava bacterial pathogen Xanthomonas axonopodis pv. manihotis strain CIO151

Mario L. Arrieta-Ortiz , Luis M. Rodríguez-R , Alvaro L. Pérez-Quintero , Lucie Poulin , Ana C. Díaz et al.
PLoS ONE, 2013, 8 (11), pp.e79704. ⟨10.1371/journal.pone.0079704⟩
Article dans une revue hal-01199314 v1
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Genomic insights into strategies used by Xanthomonas albilineans with its reduced artillery to spread within sugarcane xylem vessels

Isabelle Pieretti , Monique Royer , Valérie Barbe , Sébastien Carrere , Ralf Koebnik et al.
BMC Genomics, 2012, 13 (1), pp.658--680. ⟨10.1186/1471-2164-13-658⟩
Article dans une revue hal-01199327 v1

Development of a Variable Number of Tandem Repeats Typing Scheme for the Bacterial Rice Pathogen Xanthomonas oryzae pv. oryzicola

Shuai Zhao , Lucie Poulin , Luis Rodriguez-R , Natalia Forero Serna , Shu-Yan Liu et al.
Phytopathology, 2012, 102 (10), pp.948-956. ⟨10.1094/PHYTO-04-12-0078-R⟩
Article dans une revue hal-03624143 v1

Multilocus sequence analysis and type III effector repertoire mining provide new insights into the evolutionary history and virulence of Xanthomonas oryzae

Ahmed Hajri , Chrystelle Brin , Shuai Zhao , Perrine David , Jia-Xu Feng et al.
Molecular Plant Pathology, 2012, 13 (3), pp.288--302. ⟨10.1111/j.1364-3703.2011.00745.x⟩
Article dans une revue hal-01199331 v1

Two new complete genome sequences offer insight into host and tissue specificity of plant pathogenic Xanthomonas spp.

Adam J. Bogdanove , Ralf Koebnik , Hong Lu , Ayako Furutani , Samuel V. Angiuoli et al.
Journal of Bacteriology, 2011, 193 (19), pp.5450-5464. ⟨10.1128/JB.05262-11⟩
Article dans une revue hal-02650254 v1

Colonization of Rice Leaf Blades by an African Strain of Xanthomonas oryzae pv. oryzae Depends on a New TAL Effector That Induces the Rice Nodulin-3 Os11N3 Gene

Yanhua Yu , Jana Streubel , Sandrine Balzergue , Antony Champion , Jens Boch et al.
Molecular Plant-Microbe Interactions, 2011, 24 (9), pp.1102 - 1113. ⟨10.1094/MPMI-11-10-0254⟩
Article dans une revue hal-02647827 v1

Comparative genomics reveals diversity among xanthomonads infecting tomato and pepper

Neha Potnis , Ksenia Krasileva , Virginia Chow , Nalvo Almeida , Prabhu Patil et al.
BMC Genomics, 2011, 12 (1), pp.146
Article dans une revue hal-03624117 v1

Membrane topology of conserved components of the type III secretion system from the plant pathogen Xanthomonas campestris pv. vesicatoria.

Carolin Berger , Guillaume P Robin , Ulla Bonas , Ralf Koebnik
Microbiology, 2010, 156 (Pt 7), pp.1963-74. ⟨10.1099/mic.0.039248-0⟩
Article dans une revue hal-00788092 v1

The type III effectors of Xanthomonas

Frank White , Neha Potnis , Jeffrey Jones , Ralf Koebnik
Molecular Plant Pathology, 2009, 10 (6), pp.749-766. ⟨10.1111/j.1364-3703.2009.00590.x⟩
Article dans une revue hal-03623600 v1

Passing GO (gene ontology) in plant pathogen biology : a report from the Xanthomonas Genomics Conference

Robert P. Ryan , Ralf Koebnik , Boris Szurek , Tristan Boureau , Adriana Bernal et al.
Cellular Microbiology, 2009, 11 (12), pp.1689-1696. ⟨10.1111/j.1462-5822.2009.01387.x⟩
Article dans une revue hal-02658546 v1
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The complete genome sequence of Xanthomonas albilineans provides new insights into the reductive genome evolution of the xylem-limited Xanthomonadaceae.

Isabelle Pieretti , Monique Royer , Valérie Barbe , Sébastien Carrere , Ralf Koebnik et al.
BMC Genomics, 2009, 10, pp.616. ⟨10.1186/1471-2164-10-616⟩
Article dans une revue hal-00730090 v1

Genome sequence and rapid evolution of the rice pathogen Xanthomonas oryzae pv. oryzae PXO99A

Steven Salzberg , Daniel Sommer , Michael Schatz , Adam Phillippy , Pablo Rabinowicz et al.
BMC Genomics, 2008, 9 (1), pp.204. ⟨10.1186/1471-2164-9-204⟩
Article dans une revue hal-03623526 v1

The missing link: Bordetella petrii is endowed with both the metabolic versatility of environmental bacteria and virulence traits of pathogenic Bordetellae

Roy Gross , Carlos Guzman , Mohammed Sebaihia , Vítor Ap Martins dos Santos , Dietmar Pieper et al.
BMC Genomics, 2008, 9 (1), pp.449. ⟨10.1186/1471-2164-9-449⟩
Article dans une revue hal-03623587 v1

Refinement of the Xanthomonas campestris pv. vesicatoria hrpD and hrpE Operon Structure

Ernst Weber , Carolin Berger , Ulla Bonas , Ralf Koebnik
Molecular Plant-Microbe Interactions, 2007, 20 (5), pp.559-567. ⟨10.1094/MPMI-20-5-0559⟩
Article dans une revue hal-03623218 v1

A Minimal Transmembrane β-Barrel Platform Protein Studied by Nuclear Magnetic Resonance ,

Maria Johansson , Simon Alioth , Kaifeng Hu , Reto Walser , Ralf Koebnik et al.
Biochemistry, 2007, 46 (5), pp.1128-1140. ⟨10.1021/bi061265e⟩
Article dans une revue istex hal-03623225 v1

Specific binding of the Xanthomonas campestris pv. vesicatoria AraC-type transcriptional activator HrpX to plant-inducible promoter boxes.

Ralf Koebnik , Antje Krüger , Frank Thieme , Alexander Urban , Ulla Bonas
Journal of Bacteriology, 2006, 188 (21), pp.7652-60. ⟨10.1128/JB.00795-06⟩
Article dans une revue hal-00163972 v1

Positive Selection of the Hrp Pilin HrpE of the Plant Pathogen Xanthomonas

Ernst Weber , Ralf Koebnik
Journal of Bacteriology, 2006, 188 (4), pp.1405-1410. ⟨10.1128/JB.188.4.1405-1410.2006⟩
Article dans une revue hal-03623211 v1

The Type III-Dependent Hrp Pilus Is Required for Productive Interaction of Xanthomonas campestris pv. vesicatoria with Pepper Host Plants

Ernst Weber , Tuula Ojanen-Reuhs , Elisabeth Huguet , Gerd Hause , Martin Romantschuk et al.
Journal of Bacteriology, 2005, 187 (7), pp.2458-2468. ⟨10.1128/JB.187.7.2458-2468.2005⟩
Article dans une revue hal-03622583 v1

TonB-dependent trans-envelope signalling: the exception or the rule?

Ralf Koebnik
Trends in Microbiology, 2005, 13 (8), pp.343-347. ⟨10.1016/j.tim.2005.06.005⟩
Article dans une revue istex hal-03622601 v1

Insights into Genome Plasticity and Pathogenicity of the Plant Pathogenic Bacterium Xanthomonas campestris pv. vesicatoria Revealed by the Complete Genome Sequence

Frank Thieme , Ralf Koebnik , Thomas Bekel , Carolin Berger , Jens Boch et al.
Journal of Bacteriology, 2005, 187 (21), pp.7254-7266. ⟨10.1128/JB.187.21.7254-7266.2005⟩
Article dans une revue hal-03623159 v1

Domain Structure of HrpE, the Hrp Pilus Subunit of Xanthomonas campestris pv. vesicatoria

Ernst Weber , Ralf Koebnik
Journal of Bacteriology, 2005, 187 (17), pp.6175-6186. ⟨10.1128/JB.187.17.6175-6186.2005⟩
Article dans une revue hal-03622616 v1

The role of bacterial pili in protein and DNA translocation

Ralf Koebnik
Trends in Microbiology, 2001, 9 (12), pp.586-590. ⟨10.1016/S0966-842X(01)02255-7⟩
Article dans une revue istex hal-03621371 v1

Sucrose transport through maltoporin mutants of Escherichia coli

Patrick van Gelder , Raimund Dutzler , Fabrice Dumas , Ralf Koebnik , Tilman Schirmer
Protein Engineering, Design and Selection, 2001, 14 (11), pp.943-948. ⟨10.1093/protein/14.11.943⟩
Article dans une revue hal-03621359 v1

Extended Sugar Slide Function for the Periplasmic Coiled Coil Domain of ScrY

Fabrice Dumas , Sabine Frank , Ralf Koebnik , Emeline Maillet , Ariel Lustig et al.
Journal of Molecular Biology, 2000, 300 (4), pp.687-695. ⟨10.1006/jmbi.2000.3897⟩
Article dans une revue istex hal-03621353 v1

Structure and function of bacterial outer membrane proteins: barrels in a nutshell

Ralf Koebnik , Kaspar Locher , Patrick van Gelder
Molecular Microbiology, 2000, 37 (2), pp.239-253. ⟨10.1046/j.1365-2958.2000.01983.x⟩
Article dans une revue hal-03621348 v1

Sugar Transport through Maltoporin of Escherichia coli

Fabrice Dumas , Ralf Koebnik , Mathias Winterhalter , Patrick van Gelder
Journal of Biological Chemistry, 2000, 275 (26), pp.19747-19751. ⟨10.1074/jbc.M000268200⟩
Article dans une revue hal-03621341 v1

Structural and Functional Roles of the Surface-Exposed Loops of the β-Barrel Membrane Protein OmpA from Escherichia coli

Ralf Koebnik
Journal of Bacteriology, 1999, 181 (12), pp.3688-3694. ⟨10.1128/JB.181.12.3688-3694.1999⟩
Article dans une revue hal-03621334 v1

Membrane assembly of the Escherichia coli outer membrane protein OmpA: exploring sequence constraints on transmembrane β-strands

Ralf Koebnik
Journal of Molecular Biology, 1999, 285 (4), pp.1801-1810. ⟨10.1006/jmbi.1998.2405⟩
Article dans une revue istex hal-03621329 v1

Stability of Trimeric OmpF Porin: The Contributions of the Latching Loop L2

Prashant Phale , Ansgar Philippsen , Thomas Kiefhaber , Ralf Koebnik , Vrishali Phale et al.
Biochemistry, 1998, 37 (45), pp.15663-15670. ⟨10.1021/bi981215c⟩
Article dans une revue istex hal-03621287 v1

Identification and Characterization of Two Quiescent Porin Genes, nmpC and ompN , in Escherichia coli B E

Alexej Prilipov , Prashant Phale , Ralf Koebnik , Christine Widmer , Jurg Rosenbusch
Journal of Bacteriology, 1998, 180 (13), pp.3388-3392. ⟨10.1128/JB.180.13.3388-3392.1998⟩
Article dans une revue hal-03621278 v1

Coupling site-directed mutagenesis with high-level expression: large scale production of mutant porins from E. coli

Alexej Prilipov , Prashant Phale , Patrick Gelder , Jurg Rosenbusch , Ralf Koebnik
FEMS Microbiology Letters, 1998, 163 (1), pp.65-72. ⟨10.1111/j.1574-6968.1998.tb13027.x⟩
Article dans une revue hal-03621269 v1

Transmembrane Signaling across the Ligand-Gated FhuA Receptor

Kaspar Locher , Bernard Rees , Ralf Koebnik , André Mitschler , Luc Moulinier et al.
Cell, 1998, 95 (6), pp.771-778. ⟨10.1016/S0092-8674(00)81700-6⟩
Article dans une revue istex hal-03621295 v1

In vivo membrane assembly of split variants of the E.coli outer membrane protein OmpA

Ralf Koebnik
The EMBO Journal, 1996, 15 (14), pp.3529-3537. ⟨10.1002/j.1460-2075.1996.tb00722.x⟩
Article dans une revue hal-03620649 v1

Proposal for a peptidoglycan-associating alpha-helical motif in the C-terminal regions of some bacterial cell-surface proteins

Ralf Koebnik
Molecular Microbiology, 1995, 16 (6), pp.1269-1270. ⟨10.1111/j.1365-2958.1995.tb02348.x⟩
Article dans une revue hal-03620644 v1

Membrane Assembly of Circularly Permuted Variants of the E. coli Outer Membrane Protein OmpA

Ralf Koebnik , Lisa Krämer
Journal of Molecular Biology, 1995, 250 (5), pp.617-626. ⟨10.1006/jmbi.1995.0403⟩
Article dans une revue istex hal-03620647 v1

Membrane topology and assembly of the outer membrane protein OmpA of Escherichia coli K12

Georg Ried , Ralf Koebnik , Ingrid Hindennach , Bettina Mutschler , Ulf Henning
Molecular and General Genetics MGG, 1994, 243 (2), pp.127-135. ⟨10.1007/BF00280309⟩
Article dans une revue istex hal-03620638 v1

Survey on Newly Characterized Iron Uptake Systems of Yersinia enterocolitica

Andreas Bäumler , Ralf Koebnik , Igor Stojiljkovic , Jürgen Heesemann , Volkmar Braun et al.
Zentralblatt fur Bakteriologie, Mikrobiologie, und Hygiene. Series A, Medical microbiology, infectious diseases, virology, parasitology, 1993, 278 (2-3), pp.416-424. ⟨10.1016/S0934-8840(11)80858-3⟩
Article dans une revue istex hal-03620633 v1

The TonB protein of Yersinia enterocolitica and its interactions with TonB-box proteins

Ralf Koebnik , Andreas Bäumler , Jürgen Heesemann , Volkmar Braun , Klaus Hantke
Molecular and General Genetics MGG, 1993, 237-237 (1-2), pp.152-160. ⟨10.1007/BF00282796⟩
Article dans une revue istex hal-03620626 v1

The TonB-dependent ferrichrome receptor FcuA of Yersinia enterocolitica: evidence against a strict co-evolution of receptor structure and substrate specificity

Ralf Koebnik , Klaus Hantke , Volkmar Braun , Andreas Bäumler , Jürgen Heesemann
Molecular Microbiology, 1993, 7 (3), pp.383-393. ⟨10.1111/j.1365-2958.1993.tb01130.x⟩
Article dans une revue hal-03620625 v1

Insertion derivatives containing segments of up to 16 amino acids identify surface- and periplasm-exposed regions of the FhuA outer membrane receptor of Escherichia coli K-12

Ralf Koebnik , Volkmar Braun
Journal of Bacteriology, 1993, 175 (3), pp.826-839. ⟨10.1128/jb.175.3.826-839.1993⟩
Article dans une revue hal-03620628 v1

The molecular interaction between components of the TonB-ExbBD-dependent and of the TolQRA-dependent bacterial uptake systems

Ralf Koebnik
Molecular Microbiology, 1993, 9 (1), pp.219. ⟨10.1111/j.1365-2958.1993.tb01683.x⟩
Article dans une revue hal-03620634 v1

Structural organization of TonB-dependent receptors

Ralf Koebnik
Trends in Microbiology, 1993, 1 (5), pp.201. ⟨10.1016/0966-842X(93)90092-6⟩
Article dans une revue istex hal-03620636 v1

CRISPRI AS A TOOL FOR THE FUNCTIONAL STUDY OF GENE FAMILIES IN XANTHOMONAS

Carlos Andrés Zárate-Chaves , Corinne Audran , César Augusto Medina Culma , Escalone Aline , Stéphanie Javegny et al.
ICPP2023, Aug 2023, Lyon, France
Communication dans un congrès hal-04208321 v1
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Crispri as a tool for the functional study of gene families in Xanthomonas

Carlos Andrés Zárate-Chaves , Corinne Audran , Cesar Medina , Aline Escalon , Stéphanie Javegny et al.
12. International Congress of Plant Pathology (ICPP 2023), ISPP; SFP, Aug 2023, Lyon, France. pp.575-576
Communication dans un congrès hal-05182123 v1

Ebb and flow of vascular pathogenesis through repeated gain and loss of a molecular switch

E. Gluck-Thaler , Aude Cerutti , A. L. Perez Quintero , C. Pesce , Alain Jauneau et al.
18. Congress of International-Society-for-Molecular-Plant-Microbe-Interactions (IS-MPMI), International Society for Molecular Plant-Microbe Interactions (IS-MPMI). INT., Jul 2019, Glasgow, United Kingdom
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A single cellobiosidase is required for barley hydathode and xylem colonization by Xanthomonas translucens

Aude Cerutti , Alain Jauneau , Marie-Christine Auriac , J. Butchacas , E. Gluck-Thaler et al.
18. Congress of International-Society-for-Molecular-Plant-Microbe-Interactions (IS-MPMI), International Society for Molecular Plant-Microbe Interactions (IS-MPMI). INT., Jul 2019, Glasgow, United Kingdom
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Surveillance and control of cassava diseases in Africa - International meeting results in Pan-African cassava disease network

Jean-Michel Lett , Michel Roux-Cuvelier , Abdou Azali Hamza , H. Atta Diallo , Larry Beach et al.
World Congress on Root and Tuber Crops, Jan 2016, Guangxi, China
Communication dans un congrès hal-01456753 v1

Tandem repeats as genotyping tools for understanding the genetic structure and epidemiology of #Xanthomonas citri# pv. #citri#

Alice Leduc , Yaya Nadia Traoré , Karine Boyer , Maxime Magne , Pierre Grygiel et al.
Xanthomonas Genomics Conference 2015, Jul 2015, Bogota, Colombia
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Comparative genomics and transcriptomics of #Xanthomonas campestris# : Session 3- Physiologie, génétique et génomique des bactéries

Stéphanie Bolot , Brice Roux , Endrick Guy , Nicolas Denancé , Martine Lautier et al.
11èmes Rencontres Plantes-Bactéries, Feb 2014, Aussois, France. pp.40
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Genome mining reveals a novel and promising NRPS gene cluster in #Xanthomonas albilineans#, #Xanthomonas oryzae# and #Xanthomonas translucens#

Monique Royer , Ralf Koebnik , Melanie Marguerettaz , Valérie Barbe , Guillaume P. Robin et al.
59. Congresso Brasileiro de Genética, Sep 2013, Águas de Lindóia, Brazil
Communication dans un congrès hal-01456738 v1

Genome and transcriptome analysis to reveal adaptation to new environments and hosts

Lionel Gagnevin , Brice Roux , Stéphanie Bolot , Sebastien Carrere , Erika Charbit et al.
APS-MSA Joint Meeting, Aug 2013, Austin, Texas, United States
Communication dans un congrès hal-01209932 v1

Genome sequencing of Xanthomonas axonopodis pv. phaseoli CFBP4834-R reveals that flagellar motility is not a general feature of xanthomonads. [Abstract]

Armelle Darrasse , Sébastien Carrere , Valérie Barbe , Tristan Bourreau , Adriana Bernal et al.
4. Xanthomonas Genomics Conference, Jul 2012, Angers, France
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The complete genome sequence of Xanthomonas albilineans provides insights into pathogenicity of this sugarcane pathogen and allows further assessments of the large diversity within this species

Isabelle Pieretti , Stéphane Cociancich , Valerie Barbe , Sébastien Carrere , Ralf Koebnik et al.
5th European conference on prokaryotic and fungal genomics, Sep 2011, Göttingen, Germany
Communication dans un congrès hal-01202957 v1

Evidences for selection on promoter region reveal a hidden aspect of the multifaceted evolution of the type three effector Avrbs2 in the Xanthomonas axonopodis species

P. David , Ahmed Hajri , C Rousseau , Chrystelle Brin , Sophie Bonneau et al.
International meeting on communication in plants and their responses to the environment, May 2011, ZZ, Unknown Region
Communication dans un congrès hal-01202956 v1

The complete genome sequence of Xanthomonas albilineans provides new insights into the reductive genome evolution of the xylem-limited Xanthomonadaceae

Isabelle Pieretti , Monique Royer , Valérie Barbe , Sebastien Carrere , Ralf Koebnik et al.
14. International Congress on Molecular Plant-Microbe Interactions, Jul 2009, Québec City, Canada. 2 p
Communication dans un congrès hal-02817753 v1

La séquence complète du génome de Xanthomonas albilineans apporte un éclairage nouveau sur l'évolution des Xanthomonadaceae dont l'habitat est limité au xylème

Isabelle Pieretti , Monique Royer , Valérie Barbe , Sebastien Carrere , Ralf Koebnik et al.
7. Colloque National de la Société Française de Phytopathologie, Jun 2009, Lyon, France. 1 p
Communication dans un congrès hal-02824029 v1

La séquence complète du génome de Xanthomonas albilineans apporte un éclairage nouveau sur l'évolution des Xanthomonadaceae dont l'habitat est limité au xylème

I. Pieretti , M. Royer , Valérie Barbe , Sébastien Carrere , R. Koebnik et al.
7. Colloque National de la Société Française de Phytopathologie, Jun 2009, Lyon, France
Communication dans un congrès hal-00729249 v1

A novel molecular typing system for pathogenic xanthomonads

Alejandra Munoz Bodnar , Karine Durand , Christian Vernière , Olivier Pruvost , Marie Agnes Jacques et al.
Xanthomonas Genomic Conference 2009, Jul 2009, Pingree Park, Colorado, United States
Communication dans un congrès hal-02756197 v1

La séquence du génome de Xanthomonas albilineans dévoile des particularités surprenantes chez cette bactérie pathogène de la canne à sucre

Isabelle Pieretti , Monique Royer , Valérie Barbe , Sébastien Carrere , Ralf Koebnik et al.
8. Rencontres plantes-bactéries, Jan 2008, Aussois, France
Communication dans un congrès hal-01202965 v1

CHAPTER 21: Targeting of the rice transcriptome by TAL effectors of Xanthomonas oryzae

David Niño-Liu , Timothy Bancroft , Misha Rajaram , Matthew Moscou , Rico Caldo et al.
Genome-Enabled Analysis of Plant-Pathogen Interactions, The American Phytopathological Society, pp.193-206, 2017, ⟨10.1094/9780890544983.021⟩
Chapitre d'ouvrage hal-03623128 v1

The Genomics of Xanthomonas oryzae

Lindsay Triplett , Ralf Koebnik , Valerie Verdier , Jan Leach
Genomics of Plant-Associated Bacteria, Springer Berlin Heidelberg, pp.127-150, 2014, ⟨10.1007/978-3-642-55378-3_6⟩
Chapitre d'ouvrage hal-03623153 v1

Comparative genomics and evolution of bacterial type III effectors

Ralf Koebnik , Magdalen Lindeberg
Effectors in Plant–Microbe Interactions, 1, Wiley, 2011, ⟨10.1002/9781119949138.ch3⟩
Chapitre d'ouvrage hal-03623147 v1

Adhesion Mechanisms of Plant-Pathogenic Xanthomonadaceae

Nadia Mhedbi-Hajri , Marie Agnes Jacques , Ralf Koebnik
Bacterial adhesion : chemistry, biology and physics, 715, Springer International, 374 p., 2011, Advances in Experimental Medicine and Biology, 978-94-007-0940-9. ⟨10.1007/978-94-007-0940-9_5⟩
Chapitre d'ouvrage hal-02811489 v1

Chapter 18 Outer membrane proteins of Escherichia coli: mechanism of sorting and regulation of synthesis

Ulf Henning , Ralf Koebnik
Bacterial Cell Wall, 27, Elsevier, pp.381-395, 1994, New Comprehensive Biochemistry, ⟨10.1016/S0167-7306(08)60421-4⟩
Chapitre d'ouvrage hal-03620642 v1

A strategy to study population variation of Xanthomonas axonopodis pv. manihotis using a new set of multiple-locus variable number tandem repeats

L. Rache Cardenal , C. Flores , C. Lopez , Boris Szurek , C. Vernier et al.
the APS Annual Meeting in Tampa, Florida, U.S.A, Jul 2016, Tampa (FL), United States. Abstracts of Presentations at the 2016 APS Annual Meeting, 106 (12S), pp.S4.1-S4.163, 2016, ⟨10.1094/PHYTO-106-12-S4.1⟩
Poster de conférence hal-04280885 v1

AnnoTALE - Identification, Annotation and Classification of Transcription Activator-Like Effectors

Annett Erkes , Jan Grau , Maik Reschke , Jana Streubel , Richard D. Morgan et al.
Poster abstracts of GCB 2015, Sep 2015, Dortmund, Germany. ⟨10.7287/peerj.preprints.1350v2⟩
Poster de conférence hal-03625254 v1

Surveillance and control of cassava diseases in Africa

Jean-Michel Lett , Michel Roux-Cuvelier , Abdou Azali Hamza , H. Atta Diallo , Larry Beach et al.
International workshop : Surveillance and control of cassava diseases in Africa, Jun 2014, Saint-Pierre, Réunion. 2014
Poster de conférence hal-01456754 v1