Romain Bourqui

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Image document

Overlap Removal by Stochastic Gradient Descent with(out) Shape Awareness

Loann Giovannangeli , Frédéric Lalanne , Romain Giot , Romain Bourqui
IEEE Transactions on Visualization and Computer Graphics, 2024, pp.1-17. ⟨10.1109/TVCG.2024.3351479⟩
Article dans une revue hal-04404942 v1
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Guaranteed Visibility in Scatterplots with Tolerance

Loann Giovannangeli , Frédéric Lalanne , Romain Giot , Romain Bourqui
IEEE Transactions on Visualization and Computer Graphics, 2023, pp.1-11. ⟨10.1109/TVCG.2023.3326596⟩
Article dans une revue hal-04198637 v1

State of the Art of Visual Analytics for eXplainable Deep Learning

B. La Rosa , G. Blasilli , R. Bourqui , D. Auber , G. Santucci et al.
Computer Graphics Forum, In press, ⟨10.1111/cgf.14733⟩
Article dans une revue hal-03980917 v1
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Color and Shape efficiency for outlier detection from automated to user evaluation

Loann Giovannangeli , Romain Bourqui , Romain Giot , David Auber
Visual Informatics, 2022, ⟨10.1016/j.visinf.2022.03.001⟩
Article dans une revue hal-03617222 v1
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Toward Efficient Deep Learning for Graph Drawing (DL4GD)

Loann Giovannangeli , Frederic Lalanne , David Auber , Romain Giot , Romain Bourqui
IEEE Transactions on Visualization and Computer Graphics, 2022, pp.1-16. ⟨10.1109/TVCG.2022.3222186⟩
Article dans une revue hal-03901281 v1

Toward automatic comparison of visualization techniques: Application to graph visualization

Loann Giovannangeli , Romain Bourqui , Romain Giot , David Auber
Visual Informatics, 2020, 4 (2), pp.86-98. ⟨10.1016/j.visinf.2020.04.002⟩
Article dans une revue hal-02899895 v1

GSAn: an alternative to enrichment analysis for annotating gene sets

Aarón Ayllón-Benítez , Romain Bourqui , Patricia Thebault , Fleur Mougin
NAR Genomics and Bioinformatics, 2020, 2 (2), ⟨10.1093/nargab/lqaa017⟩
Article dans une revue hal-02509842 v1
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HiePaCo: Scalable hierarchical exploration in abstract parallel coordinates under budget constraints

Gaëlle Richer , Joris Sansen , Frédéric Lalanne , David Auber , Romain Bourqui
Big Data Research, In press
Article dans une revue hal-02173027 v1

Visualizing omics and clinical data: which challenges for dealing with their variety?

Fleur Mougin , David Auber , Romain Bourqui , Gayo Diallo , Isabelle Dutour et al.
Methods, 2018, 132, pp.3-18. ⟨10.1016/j.ymeth.2017.08.012⟩
Article dans une revue hal-03160796 v2

Visual Exploration of Large Multidimensional Data Using Parallel Coordinates on Big Data Infrastructure

Joris Sansen , Gaëlle Richer , Timothée Jourde , Frédéric Lalanne , David Auber et al.
Informatics, 2017, 4 (3), ⟨10.3390/informatics4030021⟩
Article dans une revue hal-01610951 v1

rNAV 2.0: a visualization tool for bacterial sRNA-mediated regulatory networks mining

Romain Bourqui , Isabelle Dutour , Jonathan Dubois , William Benchimol , Patricia Thebault
BMC Bioinformatics, 2017, 18 (1), ⟨10.1186/s12859-017-1598-8⟩
Article dans une revue hal-01521081 v1

Advantages of mixing bioinformatics and visualization approaches for analyzing sRNA-mediated regulatory bacterial networks.

Patricia Thebault , Romain Bourqui , Benchimol William , Christine Gaspin , Pascal Sirand-Pugnet et al.
Briefings in Bioinformatics, 2015, 16 (5), pp.1-11. ⟨10.1093/bib/bbu045⟩
Article dans une revue hal-01090907 v1
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ImPrEd: An Improved Force-Directed Algorithm that Prevents Nodes from Crossing Edges

Paolo Simonetto , Daniel Archambault , David Auber , Romain Bourqui
Computer Graphics Forum, 2011, IEEE Symposium on visualization 2011 (EuroVis 2011), 30 (3)
Article dans une revue inria-00605921 v1

Communities and hierarchical structures in dynamic social networks: analysis and visualization

Frédéric Gilbert , Paolo Simonetto , Faraz Zaidi , Fabien Jourdan , Romain Bourqui
Social Network Analysis and Mining, 2011, 1 (2), pp.85-95. ⟨10.1007/s13278-010-0002-8⟩
Article dans une revue hal-00520936 v1
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Pathway Preserving Representation of Metabolic Networks

Antoine Lambert , Jonathan Dubois , Romain Bourqui
Computer Graphics Forum, 2011, Special Issue Bergen, Norway 1 - 3 June 2011, 30 (3), pp.1021 - 1030
Article dans une revue inria-00579267 v1
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Winding Roads: Routing edges into bundles

Antoine Lambert , Romain Bourqui , David Auber
Computer Graphics Forum, 2010, 29 (3), pp.853-862
Article dans une revue hal-00495279 v1
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Un algorithme stable de décomposition pour l'analyse des réseaux sociaux dynamiques

Romain Bourqui , Paolo Simonetto , Fabien Jourdan
Revue des Nouvelles Technologies de l'Information, 2009, pp.337-348
Article dans une revue hal-00406437 v1
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Metabolic network visualization eliminating node redundance and preserving metabolic pathways

Romain Bourqui , L. Cottret , Vincent Lacroix , D. Auber , P. Mary et al.
BMC Biology, 2007, 1 - n°29, pp.1-19. ⟨10.1186/1752-0509-1-29⟩
Article dans une revue hal-00434765 v1

Metabolic network visualization using constraint planar graph drawing algorithm

Romain Bourqui , D. Auber , Vincent Lacroix , F. Jourdan
incollection, 2006, --, pp.489-496
Article dans une revue hal-00427907 v1
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Multi Layered Feature Explanation Method for Convolutional Neural Networks ⋆

Luca Bourroux , Jenny Benois-Pineau , Romain Bourqui , Romain Giot
International Conference on Pattern Recognition and Artificial Intelligence (ICPRAI), Jun 2022, Paris, France. ⟨10.1007/978-3-031-09037-0_49⟩
Communication dans un congrès hal-03689004 v1
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Samples Classification Analysis Across DNN Layers with Fractal Curves

Adrien Halnaut , Romain Giot , Romain Bourqui , D. Auber
ICPR 2020's Workshop Explainable Deep Learning for AI, Jan 2021, Milano (virtual), Italy
Communication dans un congrès hal-03111634 v1
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Deep Dive into Deep Neural Networks with Flows

Adrien Halnaut , Romain Giot , Romain Bourqui , David Auber
Proceedings of the 15th International Joint Conference on Computer Vision, Imaging and Computer Graphics Theory and Applications (VISIGRAPP 2020): IVAPP, Feb 2020, Valletta, Malta. pp.231-239
Communication dans un congrès hal-02492393 v1
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CorFish: Coordinating Emphasis across Multiple Views using Spatial Distortion

Gaëlle Richer , Romain Bourqui , David Auber
12th IEEE Pacific Visualization Symposium (PacificVis 2019), Apr 2019, Bangkok, Thailand
Communication dans un congrès hal-02103783 v1
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Enabling Hierarchical Exploration for Large-Scale Multidimensional Data with Abstract Parallel Coordinates

Gaëlle Richer , Joris Sansen , Frédéric Lalanne , David Auber , Romain Bourqui
International Workshop on Big Data Visual Exploration and Analytics 2018, Mar 2018, Vienna, Austria. pp.76-83
Communication dans un congrès hal-01700775 v2

Deciphering gene sets annotations with ontology based visualization

Aarón Ayllón-Benítez , Fleur Mougin , Jesualdo Tomás Fernández-Breis , Manuel Quesada Martinez , Patricia Thebault et al.
21 st International conference information visualisation, Jul 2017, London, United Kingdom
Communication dans un congrès hal-01524572 v1
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HeatPipe: High Throughput, Low Latency Big Data Heatmap with Spark Streaming

Alexandre Perrot , Romain Bourqui , Nicolas Hanusse , David Auber
IV2017 - 21st International Conference on Information Visualisation, Jul 2017, Londres, United Kingdom
Communication dans un congrès hal-01516888 v1
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Multilayer Graph Edge Bundling

Romain Bourqui , Dino Ienco , Arnaud Sallaberry , Pascal Poncelet
IEEE Pacific Visualization Symposium (PacificVis), Apr 2016, Taipei, Taiwan. pp.184-188, ⟨10.1109/PACIFICVIS.2016.7465267⟩
Communication dans un congrès lirmm-01304602 v1
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Visualization of sRNA-mRNA Interaction Predictions

Joris Sansen , Patricia Thebault , Isabelle Dutour , Romain Bourqui
20th International Conference Information Visualisation (IVS 2016), Jul 2016, Lisbonne, Portugal. pp.342-347, ⟨10.1109/IV.2016.14⟩
Communication dans un congrès hal-01559083 v1
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Audit d’une base de documents étiquetée

Romain Giot , Romain Bourqui , Nicholas Journet , Anne Vialard
Colloque International Francophone sur l’Écrit et le Document 2016 (CIFED), Mar 2016, Toulouse, France. pp.153-166
Communication dans un congrès hal-01286564 v1
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Zoo Graph: a New Visualisation for Biometric System Evaluation

Romain Giot , Romain Bourqui , Mohamad El-Abed
Information Visualisation 2016 (IV2016), Jul 2016, Lisbonne, Portugal
Communication dans un congrès hal-01355690 v1
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Visual Graph Analysis for Quality Assessment of Manually Labelled Documents Image Database

Romain Giot , Romain Bourqui , Nicholas Journet , Anne Vialard
13th International Conference on Document Analysis and Recognition (ICDAR 2015), Aug 2015, Tunis, Tunisia. pp.7
Communication dans un congrès hal-01170011 v1
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Large Interactive Visualization of Density Functions on Big Data Infrastructure

Alexandre Perrot , Romain Bourqui , Nicolas Hanusse , Frédéric Lalanne , David Auber
5th IEEE Symposium on Large Data Analysis and Visualization, IEEE, Oct 2015, Chicago, United States
Communication dans un congrès hal-01188721 v1
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Fast Graph Drawing Algorithm Revealing Networks Cores

Romain Giot , Romain Bourqui
Proceedings of the 19th International Conference Information Visualisation, Jul 2015, Barcelone, Spain
Communication dans un congrès hal-01170017 v1
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Adjasankey: Visualization of huge hierarchical weighted and directed graphs

Joris Sansen , Frédéric Lalanne , David Auber , Romain Bourqui
Conference on Information Visualisation (IV'15), Jul 2015, barcelone, Spain. pp.211 - 216, ⟨10.1109/iV.2015.46⟩
Communication dans un congrès hal-01189106 v1
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Edge Visual Encodings in Matrix-Based Diagrams

Joris Sansen , Romain Bourqui , Bruno Pinaud , Helen Purchase
Information Visualisation (iV), 2015 19th International Conference on , Jul 2015, barcelone, Spain. pp.62 - 67, ⟨10.1109/iV.2015.22⟩
Communication dans un congrès hal-01189166 v1
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Genome-wide detection of sRNA targets with rNAV

Jonathan Dubois , Amine Ghozlane , Patricia Thebault , Isabelle Dutour , Romain Bourqui
Symposium on Biological Data Visualization, Oct 2013, Atlanta, United States. pp.81 - 88
Communication dans un congrès hal-00935443 v1

A visualization approach to analyse bacterial sRNA-mediated regulatory networks

Jonathan Dubois , Amine Ghozlane , Patricia Thébault , Isabelle Dutour , Romain Bourqui
Journées Ouvertes Biologie Informatique Mathématiques (JOBIM 2013), Jul 2013, France. pp.Poster
Communication dans un congrès hal-00838731 v1
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Visualization of time-series data in the context of metabolic networks with Systrip Software

Jonathan Dubois , Ludovic Cottret , Amine Ghozlane , David Auber , Frédéric Bringaud et al.
Journées Ouvertes Biologie Informatique Mathématiques (JOBIM 2013), Jul 2013, France
Communication dans un congrès hal-00838725 v1

iRNA: Integrative pipeline for genome-wide detection of sRNA targets

Amine Ghozlane , Jonathan Dubois , Isabelle Dutour , Romain Bourqui , Marc Breton et al.
"Autour des ARNs non codant" - Rencontre bioinformatique 2012, Feb 2012, Toulouse, France
Communication dans un congrès hal-00695794 v1
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Visualizing patterns in Node-link Diagrams

Antoine Lambert , François Queyroi , Romain Bourqui
16th International Conference on Information Visualisation (IV'12), Jul 2012, Montpellier, France. pp.48-53
Communication dans un congrès hal-00744965 v1
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Systrip: a visual environment for the investigation of time-series data in the context of metabolic networks

Jonathan Dubois , Ludovic Cottret , Amine Ghozlane , David Auber , Frédéric Bringaud et al.
16th International Conference on Information Visualization (IV'12), Jul 2012, Montpellier, France. pp.4771a204
Communication dans un congrès hal-00742176 v1
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Domain specific vs Generic Network Visualization: an evaluation with metabolic networks

Romain Bourqui , Helen Purchase , Fabien Jourdan
Australasian Conference on User Interface, Jan 2011, Australia. pp.9-18
Communication dans un congrès hal-00579230 v1
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3D Edge Bundling for Geographical Data Visualization

Antoine Lambert , Romain Bourqui , David Auber
IV 2010 - 14th International Conference on Information Visualization, Jul 2010, London, United Kingdom. pp.329-335
Communication dans un congrès hal-00495307 v1

Tulip: a Scalable Graph Visualization Framework

David Auber , Patrick Mary , Morgan Mathiaut , Jonathan Dubois , Antoine Lambert et al.
Extraction et Gestion des Connaissances (EGC) 2010, Jan 2010, Hammamet, Tunisia. pp.623-624
Communication dans un congrès inria-00482563 v1
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Detecting structural changes and command hierarchies in dynamic social networks

Romain Bourqui , Frédéric Gilbert , Paolo Simonetto , Faraz Zaidi , Umang Sharan et al.
Advances in Social Network Analysis and Data Mining, 2009, Greece. pp.83-88
Communication dans un congrès hal-00406240 v1
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Visualizing Temporal Dynamics at the Genomic and Metabolic Level

Romain Bourqui , Michel A. Westenberg
International Conference on Information Visualisation (IV'09),, Jul 2009, Spain. pp.317-322
Communication dans un congrès hal-00406247 v1
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Large Quasi-Tree Drawing: A Neighborhood Based Approach

Romain Bourqui , David Auber
13th International Conference on Information Visualisation, Jul 2009, Spain. pp.653-660
Communication dans un congrès hal-00406435 v1
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Revealing subnetwork roles using contextual visualization: comparison of metabolic networks

Romain Bourqui , Fabien Jourdan
12th International Conference on Information Visualisation, Jul 2008, London, United Kingdom. pp.638-643
Communication dans un congrès hal-00343889 v1

VAST 2008 Challenge: Social network dynamics using cell phone call patterns

Romain Bourqui , Faraz Zaidi , Frédéric Gilbert , Umang Sharan , Paolo Simonetto
IEEE Symposium on Visual Analytics Science and Technology, 2008, United States
Communication dans un congrès hal-00335647 v1

How to Draw ClusteredWeighted Graphs using a Multilevel Force-Directed Graph Drawing Algorithm

Romain Bourqui , David Auber , Patrick Mary
11th International Conference on Information Visualisation, IV 2007, Jul 2007, Sweden. pp.757-764
Communication dans un congrès hal-00306672 v1

Comparaison Visuelle de Réseaux Métaboliques

Romain Bourqui , Fabien Jourdan
8èmes Journées Ouvertes Biologie Informatique Mathématiques, 2007, France. pp.285-286
Communication dans un congrès hal-00306674 v1

Metabolic network visualization using constraint planar graph drawing Algorithm

Romain Bourqui , David Auber , Vincent Lacroix , Fabien Jourdan
IV 06: Proceedings of the 10 International Conference on Information Visualisation (IV06), 2006, United States. pp.489 - 496
Communication dans un congrès hal-00306676 v1

Un Algorithme Contraint de Dessin de Graphe Planaire pour la Visualisation de Réseaux Métaboliques

Romain Bourqui , David Auber , Vincent Lacroix , Fabien Jourdan
Quatrième édition du congrés francophone de doctorants en STIC, MajecSTIC, 2006, France. pp.électronique
Communication dans un congrès hal-00306673 v1

Explainable AI in Image Classification Tasks: How to Choose the Best?

Alexey Zhukov , Jenny Benois-Pineau , Romain Giot , Romain Bourqui
Emotional Data Applications and Regulation of Artificial Intelligence in Society, 69, Springer Nature Switzerland, pp.49-70, 2025, Law, Governance and Technology Series, ⟨10.1007/978-3-031-80111-2_4⟩
Chapitre d'ouvrage hal-04999611 v1

FEM and Multi-Layered FEM: Feature Explanation Methods with Statistical Filtering of Important Features

Alexey Zhukov , Jenny Benois-Pineau , Romain Giot , Romain Bourqui , Luca Bourroux
Emerging Topics in Pattern Recognition and Artificial Intelligence, 09, WORLD SCIENTIFIC, pp.295-327, 2024, Series on Language Processing, Pattern Recognition, and Intelligent Systems, ⟨10.1142/9789811289125_0012⟩
Chapitre d'ouvrage hal-04698686 v1
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TULIP 5

David Auber , Daniel Archambault , Romain Bourqui , Maylis Delest , Jonathan Dubois et al.
Reda Alhajj; Jon Rokne. Encyclopedia of Social Network Analysis and Mining, Springer, pp.1-28, 2017, 978-1-4614-7163-9. ⟨10.1007/978-1-4614-7163-9_315-1⟩
Chapitre d'ouvrage hal-01654518 v1

Tulip III

David Auber , Daniel Archambault , Romain Bourqui , Maylis Delest , Jonathan Dubois et al.
Encyclopedia of Social Network Analysis and Mining, 2014, 978-1-4614-6169-2. ⟨10.1007/978-1-4614-6170-8_315⟩
Chapitre d'ouvrage hal-01096759 v1

Comparing Multilevel Clustering Methods on Weighted Graphs: The Case of Worldwide Air Passenger Traffic 2000-2004

Céline Rozenblat , Guy Melançon , Romain Bourqui , David Auber
Methods for Multilevel Analysis and Visualisation of Geographical Networks, Springer, pp.141-154, 2013
Chapitre d'ouvrage hal-00841187 v1

Graph Visualization for Geography

Antoine Lambert , Romain Bourqui , David Auber
Methods for Multilevel Analysis and Visualisation of Geographical Networks, Springer, pp.81-102, 2013
Chapitre d'ouvrage hal-00841188 v1
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A stable decomposition algorithm for dynamical social network analysis

Romain Bourqui , Paolo Simonetto , Fabien Jourdan
Fabrice Guillet; Gilbert Ritschard; Djamel Abdelkader Zighed and Henri Briand. Advances in Knowledge Discovery and Management, Springer, pp.167-178, 2010, Studies in Computational Intelligence, ⟨10.1007/978-3-642-00580-0_10⟩
Chapitre d'ouvrage hal-00543175 v1

Mining Networks through Visual Analytics: Incremental Hypothesis Building and Validation

David Auber , Guy Melançon , Romain Bourqui
Clive Best, Françoise Fogelman Soulié. Mining Massive Data Sets for Security, IOS Press, pp.204-211, 2008, NATO Advanced Study Institute, 978-1-58603-898-4
Chapitre d'ouvrage lirmm-00272781 v1
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TULIP 4

David Auber , Romain Bourqui , Maylis Delest , Antoine Lambert , Patrick Mary et al.
[Research Report] LaBRI - Laboratoire Bordelais de Recherche en Informatique. 2016
Rapport (rapport de recherche) hal-01359308 v1
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The Tulip 3 Framework: A Scalable Software Library for Information Visualization Applications Based on Relational Data

David Auber , Daniel Archambault , Romain Bourqui , Antoine Lambert , Morgan Mathiaut et al.
[Research Report] RR-7860, INRIA. 2012, pp.31
Rapport (rapport de recherche) hal-00659880 v1
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Décomposition et Visualisation de graphes : Applications aux Données Biologiques

Romain Bourqui
Interface homme-machine [cs.HC]. Université Sciences et Technologies - Bordeaux I, 2008. Français. ⟨NNT : ⟩
Thèse tel-00421872 v1