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The evolutionary history of three Baracoffea species from western Madagascar revealed by chloroplast and nuclear genomes
Rickarlos Bezandry
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Mathilde Dupeyron
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Laura Natalia Gonzalez-Garcia
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Artemis Anest
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Perla Hamon
et al.
Article dans une revue
hal-04448243
v1
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The genome and population genomics of allopolyploid Coffea arabica reveal the diversification history of modern coffee cultivars
J. Salojaervi
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A. Rambani
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Z. Yu
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Romain Guyot
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S. Strickler
et al.
Article dans une revue
hal-04611385
v1
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How genomics can help biodiversity conservation
Kathrin Theissinger
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Carlos Fernandes
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Giulio Formenti
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Iliana Bista
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Paul Berg
et al.
Article dans une revue
hal-04082874
v1
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The era of reference genomes in conservation genomics
Giulio Formenti
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Kathrin Theissinger
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Carlos Fernandes
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Iliana Bista
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Aureliano Bombarely
et al.
Article dans une revue
hal-03854324
v1
|
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Bactris gasipaes Kunth var. gasipaes complete plastome and phylogenetic analysis
Maria Camila Buitrago Acosta
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Rommel Montúfar
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Romain Guyot
,
Cédric Mariac
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Timothy J. Tranbarger
et al.
Article dans une revue
ird-04119645
v1
|
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The era of reference genomes in conservation genomics
Florian Maumus
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Giulio Formenti
,
Kathrin Theissinger
,
Carlos Fernandes
,
Iliana Bista
et al.
Article dans une revue
hal-03717473
v1
|
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High-quality genome sequence of white lupin provides insight into soil exploration and seed quality
Bárbara Hufnagel
,
André Marques
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Alexandre Soriano
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Laurence Marquès
,
Fanchon Divol
et al.
Article dans une revue
hal-04721448
v1
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Complex evolutionary history of coffees revealed by full plastid genomes and 28,800 nuclear SNP analyses, with particular emphasis on Coffea canephora (Robusta coffee)
Jean-Claude Charr
,
Andrea Garavito
,
Christophe Guyeux
,
Dominique Crouzillat
,
Patrick Descombes
et al.
Article dans une revue
hal-02934893
v1
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High-quality genome sequence of white lupin provides insight into soil exploration and seed quality
Barbara Hufnagel
,
André Marques
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Alexandre Soriano
,
Laurence Marquès
,
Fanchon Divol
et al.
Article dans une revue
hal-02460008
v1
|
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WCSdb: a database of wild <i>Coffea</i> species
Romain Guyot
,
Perla Hamon
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Emmanuel Couturon
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Nathalie Raharimalala
,
Jean-Jacques Rakotomalala
et al.
Article dans une revue
(data paper)
hal-04182535
v1
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Structural and Functional Annotation of Transposable Elements Revealed a Potential Regulation of Genes Involved in Rubber Biosynthesis by TE-Derived siRNA Interference in Hevea brasiliensis
Shuangyang Wu
,
Romain Guyot
,
Stéphanie Bocs
,
Gaëtan Droc
,
Fetrina Oktavia
et al.
Article dans une revue
hal-02923368
v1
|
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Phenotypic diversity assessment wihin a major ex situ collection of coffees in Madagascar
Aurore Rimlinger
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Nathalie Raharimalala
,
Véronique Letort
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Jean-Jacques Rakotomalala
,
Dominique Crouzillat
et al.
Article dans une revue
hal-03167205
v1
|
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Evaluation of chloroplast genome annotation tools and application to analysis of the evolution of coffee species
Christophe Guyeux
,
Jean Charr
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Hue T Tran
,
Agnelo Furtado
,
Robert J Henry
et al.
Article dans une revue
hal-02370722
v1
|
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An integrated analysis of mRNA and sRNA transcriptional profiles in Coffea arabica L. roots: insights on nitrogen starvation responses
Tiago Benedito dos Santos
,
João Danillo Moura Soares
,
Joni Esrom Lima
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Juliana Christiny Silva
,
Suzana Tiemi Ivamoto
et al.
Article dans une revue
hal-03469108
v1
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CRISPR/Cas9-mediated efficient targeted mutagenesis has the potential to accelerate the domestication of Coffea canephora
Jean-Christophe Breitler
,
Eveline Dechamp
,
Claudine Campa
,
Leonardo Augusto Zebral Rodrigues
,
Romain Guyot
et al.
Article dans une revue
hal-03432730
v1
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Structure and Distribution of Centromeric Retrotransposons at Diploid and Allotetraploid Coffea Centromeric and Pericentromeric Regions
Renata de Castro Nunes
,
Simon Orozco-Arias
,
Dominique Crouzillat
,
Lukas Mueller
,
Suzy Strickler
et al.
Article dans une revue
hal-03421885
v1
|
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Genome-wide association study reveals candidate genes influencing lipids and diterpenes contents in Coffea arabica L
Gustavo C. Sant’ana
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Luiz Pereira
,
David Pot
,
Suzana Tiemi Ivamoto
,
Douglas Domingues
et al.
Article dans une revue
hal-02546614
v1
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Inpactor, Integrated and Parallel Analyzer and Classifier of LTR Retrotransposons and Its Application for Pineapple LTR Retrotransposons Diversity and Dynamics
Simon Orozco-Arias
,
Juan Liu
,
Reinel Tabares-Soto
,
Diego Ceballos
,
Douglas Silva Domingues
et al.
Article dans une revue
hal-03472296
v1
|
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Genotyping-by-sequencing provides the first well-resolved phylogeny for coffee (Coffea) and insights into the evolution of caffeine content in its species
Perla Hamon
,
Corrinne Grover
,
Aaron Davis
,
Jean-Jacques Rakotomalala
,
Nathalie Raharimalala
et al.
Article dans une revue
hal-03422451
v1
|
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Methylcytosine dioxygenase TET3 interacts with thyroid hormone nuclear receptors and stabilizes their association to chromatin
Wenyue Guan
,
Romain Guyot
,
Jacques Samarut
,
Frederic Flamant
,
Jiemin Wong
et al.
Proceedings of the National Academy of Sciences of the United States of America, 2017, 114 (31), pp.8229-8234. ⟨10.1073/pnas.1702192114⟩
Article dans une revue
hal-03278385
v1
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Distribution of Divo in Coffea genomes, a poorly described family of angiosperm LTR-Retrotransposons
Mathilde Dupeyron
,
Rogerio Fernandes de Souza
,
Perla Hamon
,
Alexandre de Kochko
,
Dominique Crouzillat
et al.
Article dans une revue
hal-03423453
v1
|
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Partial sequencing reveals the transposable element composition of Coffea genomes and provides evidence for distinct evolutionary stories
Romain Guyot
,
Thibaud Darré
,
Mathilde Dupeyron
,
Alexandre de Kochko
,
Serge Hamon
et al.
Article dans une revue
hal-03430588
v1
|
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Pineapple Genome: A Reference for Monocots and CAM Photosynthesis
Ray Ming
,
Ching Man Wai
,
Romain Guyot
Article dans une revue
hal-03477103
v1
|
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Active transposable elements recover species boundaries and geographic structure in Madagascan coffee species
Julissa Roncal
,
Romain Guyot
,
Perla Hamon
,
Dominique Crouzillat
,
Michel Rigoreau
et al.
Article dans une revue
hal-03431261
v1
|
|
Identification by the DArTseq method of the genetic origin of the Coffea canephora cultivated in Vietnam and Mexico
Andrea Garavito
,
Christophe Montagnon
,
Romain Guyot
,
Benoît Bertrand
Article dans une revue
hal-03443157
v1
|
|
Developmental programmed cell death during asymmetric microsporogenesis in holocentric species of Rhynchospora (Cyperaceae)
Danilo Rocha
,
André Marques
,
Celia G.T.J. Andrade
,
Romain Guyot
,
Srinivasa Chaluvadi
et al.
Article dans une revue
hal-03477144
v1
|
|
Are Genetic and Epigenetic Instabilities of Plant Embryogenic Cells a Fatality? The Experience of Coffee Somatic Embryogenesis
Herve Etienne
,
Benoit Bertrand
,
Eveline Dechamp
,
Patrick Maurel
,
Frédéric Georget
et al.
Article dans une revue
hal-03476825
v1
|
|
Origin and domestication of papaya Y-h chromosome
Robert Vanburen
,
Fanchang Zeng
,
Cuixia Chen
,
Jisen Zhang
,
Ching Man Wai
et al.
Article dans une revue
hal-03479048
v1
|
|
Large distribution and high sequence identity of a Copia‑type retrotransposon in angiosperm families
Elaine Silva Dias
,
Clémence Hatt
,
Perla Hamon
,
Serge Hamon
,
Michel Rigoreau
et al.
Article dans une revue
ird-01225496
v1
|
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Terminal-repeat Retrotransposons with GAG domain (TR-GAG) in plant genomes: A new testimony on the complex world of transposable elements
Cristian Chaparro
,
Thomas Gayraud
,
Rogerio Fernandes de Souza
,
Douglas Silva Domingues
,
Sélastique Doffou Akaffou
et al.
Article dans une revue
hal-01162666
v2
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Assessment of genetic and epigenetic changes during cell culture ageing and relations with somaclonal variation in Coffea arabica
Roberto Bobadilla Landey
,
Alberto Cenci
,
Romain Guyot
,
Benoît Bertrand
,
Frédéric Georget
et al.
Article dans une revue
hal-03388147
v1
|
|
The pineapple genome and the evolution of CAM photosynthesis
Ray Ming
,
Robert Vanburen
,
Ching Man Wai
,
Haibao Tang
,
Michael C. Schatz
et al.
Article dans une revue
hal-03478898
v1
|
|
Chromosomal distribution and evolution of abundant retrotransposons in plants: gypsy elements in diploid and polyploid Brachiaria forage grasses
Fabíola Carvalho Santos
,
Romain Guyot
,
Cacilda Borges Do Valle
,
Lucimara Chiari
,
Vânia Helena Techio
et al.
Article dans une revue
hal-03478996
v1
|
|
Genome-wide analysis of LTR-retrotransposons in oil palm
Thierry Beulé
,
Mawussé Dt Agbessi
,
Stephane Dussert
,
Estelle Jaligot
,
Romain Guyot
Article dans une revue
hal-03205781
v1
|
|
The coffee genome provides insight into the convergent evolution of caffeine biosynthesis
France Denoeud
,
Lorenzo Carretero-Paulet
,
Alexis Dereeper
,
Gaëtan Droc
,
Romain Guyot
et al.
Article dans une revue
hal-02641562
v1
|
|
BAC-end sequences analysis provides first insights into coffee (Coffea canephora P.) genome composition and evolution
Alexis Dereeper
,
Romain Guyot
,
Christine Tranchant-Dubreuil
,
François Anthony
,
Xavier Argout
et al.
Article dans une revue
istex
cea-04667063
v1
|
|
A genetic model for the female sterility barrier between Asian and African cultivated rice species.
Andrea Garavito
,
Romain Guyot
,
Jaime Lozano
,
Frédérick F. Gavory
,
Sylvie Samain
et al.
Article dans une revue
hal-00787398
v1
|
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In planta gene expression analysis of Xanthomonas oryzae pathovar oryzae, African strain MAI1
Mauricio Soto-Suárez
,
Diana Bernal
,
Carolina González
,
Boris Szurek
,
Romain Guyot
et al.
Article dans une revue
ird-01075143
v1
|
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Microcollinearity in an ethylene receptor coding gene region of the Coffea canephora genome is extensively conserved with Vitis vinifera and other distant dicotyledonous sequenced genomes.
Romain Guyot
,
Marion de La Mare
,
Véronique Viader
,
Perla Hamon
,
Olivier Coriton
et al.
Article dans une revue
hal-00695701
v1
|
|
RetrOryza: a database of the rice LTR-retrotransposons.
Cristian Chaparro
,
Romain Guyot
,
Andrea Zuccolo
,
Benoit Piegu
,
Olivier Panaud
Article dans une revue
hal-00164403
v1
|
|
Doubling genome size without polyploidization: dynamics of retrotransposition-driven genomic expansions in Oryza australiensis, a wild relative of rice.
Benoit Piegu
,
Romain Guyot
,
Nathalie Picault
,
Anne Roulin
,
Abhijit Saniyal
et al.
Article dans une revue
hal-00164404
v1
|
|
Identification of 66 box C/D snoRNAs in Arabidopsis thaliana: extensive gene duplications generated multiple isoforms predicting new ribosomal RNA 2'-O-methylation sites
Fredy Barneche
,
Christine Gaspin
,
Romain Guyot
,
Manuel Echeverria
Article dans une revue
istex
hal-02677526
v1
|