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Stéphane Nicolas

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Genetic variability of aquaporin expression in maize: From eQTLs to a MITE insertion regulating PIP2;5 expression

Laurie C Maistriaux , Maxime J Laurent , Linda Jeanguenin , Santiago Alvarez Prado , Joseph Nader
Plant Physiology, In press, ⟨10.1093/plphys/kiae326⟩
Journal articles hal-04639221v1
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Genetic and Phenotypic Evaluation of European Maize Landraces as a Tool for Conservation and Valorization of Agrobiodiversity

Carlotta Balconi , Agustin Galaretto , Rosa Ana Malvar , Stéphane D Nicolas , Rita Redaelli
Biology, 2024, 13 (6), pp.454. ⟨10.3390/biology13060454⟩
Journal articles hal-04645117v1
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Genotyping of DNA pools identifies untapped landraces and genomic regions to develop next‐generation varieties

Mariangela Arca , Brigitte Gouesnard , Tristan Mary‐huard , Marie‐christine Le Paslier , Cyril Bauland
Plant Biotechnology Journal, In press, ⟨10.1111/pbi.14022⟩
Journal articles hal-04103846v1
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Genetic diversity and selection signatures in a gene bank panel of maize inbred lines from Southeast Europe compared with two West European panels

Vlatko Galić , Violeta Anđelković , Natalija Kravić , Nikola Grčić , Tatjana Ledenčan
BMC Plant Biology, 2023, 23 (1), pp.315. ⟨10.1186/s12870-023-04336-2⟩
Journal articles hal-04189388v1
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Deciphering the Genetic Diversity of Landraces With High-Throughput SNP Genotyping of DNA Bulks: Methodology and Application to the Maize 50k Array

Mariangela Arca , Tristan Mary-Huard , Brigitte Gouesnard , Aurélie Bérard , Cyril Bauland
Frontiers in Plant Science, 2021, 11, ⟨10.3389/fpls.2020.568699⟩
Journal articles hal-03368756v1
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Genetic diversity of maize landraces from the South-West of France

Yacine Diaw , Christine Tollon-Cordet , Alain Charcosset , Stéphane D. Nicolas , Delphine Madur
PLoS ONE, 2021, 16 (2), pp.e0238334. ⟨10.1371/journal.pone.0238334⟩
Journal articles hal-03210018v1
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A systems genetics approach reveals environment-dependent associations between SNPs, protein coexpression, and drought-related traits in maize

Melisande Blein-Nicolas , Sandra Sylvia Negro , Thierry Balliau , Claude Welcker , Llorenç Cabrera-Bosquet
Genome Research, 2020, 30 (11), pp.1593-1604. ⟨10.1101/gr.255224.119⟩
Journal articles hal-03009577v1
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Maize adaptation across temperate climates was obtained via expression of two florigen genes

Sara Castelletti , Aude Coupel-Ledru , Italo Granato , Carine Palaffre , Llorenç Cabrera-Bosquet
PLoS Genetics, 2020, 16 (7), pp.e1008882. ⟨10.1371/journal.pgen.1008882⟩
Journal articles hal-02916912v1

High throughput genotyping of structural variations in a complex plant genome using an original Affymetrix® axiom® array

Clément Mabire , Jorge Duarte , Aude Darracq , Ali Pirani , Hélène Rimbert
BMC Genomics, 2019, 20 (1), ⟨10.1186/s12864-019-6136-9⟩
Journal articles hal-02393099v1
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Genotyping-by-sequencing and SNP-arrays are complementary for detecting quantitative trait loci by tagging different haplotypes in association studies

Sandra Silvia Negro , Emilie Millet , Delphine Madur , Cyril Bauland , Valerie Combes
BMC Plant Biology, 2019, 19 (1), ⟨10.1186/s12870-019-1926-4⟩
Journal articles hal-02627073v1

CORRECTION: Exploiting the Genetic Diversity of Maize Using a Combined Metabolomic, Enzyme Activity Profiling, and Metabolic Modelling Approach to Link Leaf Physiology to Kernel Yield.

Rafael Canas-Pendon Canas , Zhazira Yesbergenova-Cuny , Margaret Simons , Fabien Chardon , Patrick P. Armengaud
The Plant cell, 2018, 30, pp.946. ⟨10.1105/tpc.18.00273⟩
Journal articles hal-02624574v1
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Sequence analysis of European maize inbred line F2 provides new insights into molecular and chromosomal characteristics of presence/absence variants

Aude Darracq , Clémentine Vitte , Stephane S. Nicolas , Jorge Duarte , Jean-Philippe Pichon
BMC Genomics, 2018, 19 (1), ⟨10.1186/s12864-018-4490-7⟩
Journal articles hal-02625253v1

Genotyping-by-sequencing highlights original diversity patterns within a European collection of 1191 maize flint lines, as compared to the maize USDA genebank

Brigitte Gouesnard , Sandra Silvia Negro , Amélie Laffray , Jeff Glaubitz , Albrecht Melchinger
TAG Theoretical and Applied Genetics, 2017, 130 (10), ⟨10.1007/s00122-017-2949-6⟩
Journal articles hal-01595534v1

Exploiting the Genetic Diversity of Maize Using a Combined Metabolomic, Enzyme Activity Profiling, and Metabolic Modeling Approach to Link Leaf Physiology to Kernel Yield.

Rafael Canas-Pendon , Zhazira Yesbergenova-Cuny , Margaret Simons , Fabien Chardon , Patrick Armengaud
The Plant cell, 2017, 29 (5), pp.919-943. ⟨10.1105/tpc.16.00613⟩
Journal articles hal-01605953v1
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Independent introductions and admixtures have contributed to adaptation of European maize and its American counterparts

Jean-Tristan Brandenburg , Tristan Mary , Guillem Rigaill , Sarah J. Hearne , Hélène Corti
PLoS Genetics, 2017, 13 (3), pp.e1006666. ⟨10.1371/journal.pgen.1006666⟩
Journal articles hal-01605143v1
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Testing the link between genome size and growth rate in maize

Maud Tenaillon , Doménica Manicacci , Stephane Nicolas , Francois Tardieu , Claude Welcker
PeerJ, 2016, 4, pp.e2408. ⟨10.7717/peerj.2408⟩
Journal articles hal-01461166v1
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Genetic diversity, linkage disequilibrium and power of a large grapevine (Vitis vinifera L) diversity panel newly designed for association studies

Stéphane D. Nicolas , Jean-Pierre Péros , Thierry Lacombe , Amandine Launay , Marie-Christine Le Paslier
BMC Plant Biology, 2016, 16 (1), pp.74. ⟨10.1186/s12870-016-0754-z⟩
Journal articles inserm-01322529v1

Genome-wide analysis of yield in Europe: allelic effects as functions of drought and heat scenarios

Emilie Millet , Claude Welcker , Willem Kruijer , Sandra Negro , Aude Coupel-Ledru
Plant Physiology, 2016, 172 (2), ⟨10.1104/pp.16.00621⟩
Journal articles hal-01362496v1

Dent and flint maize diversity panels reveal important genetic potential for increasing biomass production

Renaud Rincent , Stephane S. Nicolas , Sophie Bouchet , T. Altmann , Dominique D. Brunel
TAG Theoretical and Applied Genetics, 2014, 127 (11), pp.2313-2331. ⟨10.1007/s00122-014-2379-7⟩
Journal articles hal-02637142v1

Recovering power in Association Mapping Panels with variable levels of linkage disequilibrium

Renaud Rincent , Laurence Moreau , Hervé Monod , Estelle Kuhn , Albrecht E Melchinger
Genetics, 2014, 197 (1), pp.375-387. ⟨10.1534/genetics.113.159731⟩
Journal articles hal-02634244v1
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Genetic variability of berry size in grapevine (Vitis vinifera L.)

Cléa Houel , Marie-Laure Magniette , Stéphane D. Nicolas , Thierry Lacombe , Loic Le Cunff
Australian Journal of Grape and Wine Research, 2013, 19 (2), pp.208-220. ⟨10.1111/ajgw.12021⟩
Journal articles hal-01223540v1
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Adaptation of maize to temperate climates: mid-density genome-wide association genetics and diversity patterns reveal key genomic regions, with a major contribution of the Vgt2 (ZCN8) locus

Sophie Bouchet , Bertrand Servin , Pascal Bertin , Delphine D. Madur , Valerie V. Combes
PLoS ONE, 2013, 8 (8), ⟨10.1371/journal.pone.0071377⟩
Journal articles hal-02652500v1

Maximizing the reliability of genomic selection by optimizing the calibration set of reference individuals: comparison of methods in two diverse groups of maize inbreds (Zea mays L.)

Renaud Rincent , Denis Laloë , Stephane Nicolas , T. Altmann , Dominique Brunel
Genetics, 2012, 192 (2), pp.715-728. ⟨10.1534/genetics.112.141473⟩
Journal articles hal-01019845v1

Diversity and linkage disequilibrium features in a composite public/private dent maize panel: consequences for association genetics as evaluated from a case study using flowering time

Marion Truntzler , N. Ranc , M. C. Sawkins , Stephane S. Nicolas , Doménica Manicacci
TAG Theoretical and Applied Genetics, 2012, 125 (4), pp.731 - 747. ⟨10.1007/s00122-012-1866-y⟩
Journal articles hal-02643782v1
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Non-random distribution of extensive chromosome rearrangements in Brassica napus depends on genome organization

Stephane S. Nicolas , Herve H. Monod , Frederique F. Eber , Anne-Marie Chèvre , Eric E. Jenczewski
The Plant Journal, 2012, 70 (4), pp.691 - 703. ⟨10.1111/j.1365-313X.2012.04914.x⟩
Journal articles hal-01004194v1
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SNiPlay: a web-based tool for detection, management and analysis of SNPs. Application to grapevine diversity projects

Alexis Dereeper , Stephane S. Nicolas , Loïc Le Cunff , Roberto Bacilieri , Agnès Doligez
BMC Bioinformatics, 2011, 12 (134), 14 p. ⟨10.1186/1471-2105-12-134⟩
Journal articles hal-02644798v1

Genetic regulation of meiotic cross-overs between related genomes in brassica napus haploids and hybrids

Stephane Nicolas , Martine Leflon , Hervé Monod , Frédérique Eber , Olivier O. Coriton
The Plant cell, 2009, 21, pp.373-385. ⟨10.1105/tpc.108.062273⟩
Journal articles hal-02663581v1

Chromosome ‘speed dating’ during meiosis of polyploid Brassica hybrids and haploids

Stephane Nicolas , Martine Leflon , Zhiqian Liu , Olivier O. Coriton , Anne-Marie Chèvre
Cytogenetic and Genome Research, 2008, pp.331-338
Journal articles hal-02653288v1

Homeologous recombination plays a major role in chromosome rearrangements that occur during meiosis of Brassica napus haploids

Stephane Nicolas , Guillaume G. Le Mignon , Frederique F. Eber , Olivier O. Coriton , Hervé Monod
Genetics, 2007, 175 (2), pp.487-503. ⟨10.1534/genetics.106.062968⟩
Journal articles hal-02668271v1

Proteomics-based systems approach of maize response to water deficit

Melisande Blein-Nicolas , Yacine Djabali , Claude Welcker , Llorenç Cabrera-Bosquet , Stephane Nicolas
5th InPPO Conference, May 2023, Thessalonique, Greece
Conference papers hal-04302629v1
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Genome-wide association studies on DNA pools identifies promising maize landraces and genomic regions to develop next generation varieties

Stéphane Nicolas , Antoine Roux , Sarah Ben-Sadoun , Mariangela Arca , Agustin O. Galaretto
Plant Biology Europe 2023, Jul 2023, Marseille, France
Conference papers hal-04225361v1

Presence/Absence variation contributes to adaptation, agronomic traits variation and hybrid performances in maize

Clément Mabire , Romane Guilbaud , Jorge Duarte , Aude Darracq , Ali Piranni
XXVth EUCARPIA Maize and Sorghum Conference – Current challenges and new methods for Maize and Sorghum Breeding, May 2022, Belgrade, Serbia
Conference papers hal-04225603v1

Rôles des variations structurales dans la construction des caractères moléculaires et phénotypiques

Yacine Djabali , Melisande Blein-Nicolas , Stephane Nicolas
Journées du Protéome Vert, Jun 2022, Gif-sur-Yette, France
Conference papers hal-03878368v1

A systems approach of drought response in maize

Melisande Blein-Nicolas , Yacine Djabali , Thierry Balliau , Llorenç Cabrera , Claude Welcker
Journée SPS-CLAND, Sep 2021, Visioconférence, France
Conference papers hal-03879816v1

A systems approach of drought response in maize

Melisande Blein-Nicolas , Yacine Djabali , Thierry Balliau , Llorenç Cabrera-Bosquet , Sandra Negro
Séminaire du département des Science de l'Environnement de l'Université de Bordeaux, Nov 2021, Bordeaux, France
Conference papers hal-03879809v1

A systems approach of drought tolerance in maize

Melisande Blein-Nicolas , Sandra Negro , Thierry Balliau , Claude Welcker , Llorenç Cabrera
AMAIZING Final Conference, Sep 2021, Visioconférence, France
Conference papers hal-03879824v1

Systems genetics of drought-related traits in maize

Melisande Blein-Nicolas , Sandra Negro , Thierry Balliau , Claude Welcker , Llorenç Cabrera-Bosquet
Evolutionary Systems Biology congress, Feb 2020, Cambridge, United Kingdom
Conference papers hal-03879843v1

Genome-wide SNP genotyping of DNA pools identifies original landraces to enrich maize breeding genepools

Stephane Nicolas , Mariangela Arca , Tristan Mary Huard , Marie-Christine Le Paslier , Cyril Bauland
Harlan International Symposium : Harlan III, Jun 2019, Montpellier, France
Conference papers hal-03368726v1

Integrating proteomics and genomics into systems genetics to better understand the mechanisms of drought tolerance in maize

Melisande Blein-Nicolas , Sandra Negro , Thierry Balliau , Claude Welcker , Llorenç Cabrera
Journée SFEAP-SFSM, Apr 2019, Paris, France
Conference papers hal-03879865v1

Contribution des Insertion/Délétions à la variations des caractères, l’adaptation et aux performances hybrides au moyen d’une puce de génotypage haut débit

Clément Mabire , Jorge Duarte , Johann Joets , Julie B Fiévet , Romane Guilbaud
Colloque GIS-BV, Jul 2019, Paris, France
Conference papers hal-02787704v1

Genotyping-by-sequencing and SNP-arrays are complementary for detecting quantitative trait loci by tagging different haplotypes in association studies

Stephane S. Nicolas , Sandra Silvia Negro , Emilie Millet , Delphine Madur , Cyril Bauland
European maize meeting, May 2019, Montpellier, France
Conference papers hal-02788231v1

Genotyping-by-sequencing and SNP arrays are complementary for detecting quantitative trait loci by tagging different haplotypes in association studies

Stéphane Nicolas , Sandra Negro , Emilie Millet , Delphine Madur , Cyril Bauland
XXIVth EUCARPIA Maize and Sorghum Conference, Integrating quantitative and molecular genetics to develop new breeding methods in maize and sorghum, Oct 2019, Freising, Germany
Conference papers hal-03368737v1

Systems genetics of drought tolerance in maize

Melisande Blein-Nicolas , Sandra Negro , Thierry Balliau , Claude Welcker , Llorenç Cabrera-Bosquet
Symposium GisBV, Oct 2019, Paris, France
Conference papers hal-03879857v1
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Development of a new high throughput 105K Presence/Absence Variation genotyping array for quantitative genetic studies

Clément Mabire , Jorge Duarte , Aude Darracq , Ali Pirani , Hélène Rimbert
60. Maize Genetics Conference, Mar 2018, St Malo, France
Conference papers hal-02787197v1

Genome-wide association studies between 60 000 Present/Absent Variants and 29 agronomic traits using a high throughput genotyping array

Stephane S. Nicolas
Colloque EPGV 2018 "Détection, Gestion et Analyse du Polymorphisme des Génomes Végétaux", 2018
Conference papers hal-02786378v1

Deciphering the interest of integrating PAV genomic information in genetic analysis by investigating the extent of linkage disequilibrium

Clément Mabire , Jorge Duarte , Delphine Madur , Valerie Combes , Johann Joets
Workshop Series DynaGeV (Dynamique des Génomes Végétaux), Jun 2018, Rennes, France
Conference papers hal-02786354v1
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Regulation of aquaporin expression in maize: proximal and distal eQTLs

Laurie C Maistriaux , Linda Jeanguenin , Santiago Alvarez Prado , Stephane S. Nicolas , Claude Welcker
60. Maize Genetics Conference, Mar 2018, Saint-Malo, France
Conference papers hal-02737313v1

Design of high-troughput Presence/Absence Variant genotyping array in maize based on Affymetrix Technology

Jorge Duarte , Aude Darracq , Hélène Rimbert , Clementine Vitte , Johann Joets
Colloque EPGV 2018 "Détection, Gestion et Analyse du Polymorphisme des Génomes Végétaux", Oct 2018, Evry, France
Conference papers hal-02787234v1

GWAS for protein expression under normal and water deficit conditions in maize leaves

Melisande Blein-Nicolas , Thierry Balliau , Llorenç Cabrera-Bosquet , Hélène Corti , Claude Welcker
Journées du Protéome Vert, Mar 2017, Paris, France
Conference papers hal-03879954v1

DNA pooling for evaluating originality of the landraces

Stephane S. Nicolas , Mariangela Arca , Tristan Mary-Huard , Brigitte Gouesnard , Marie-Christine Le Paslier
1. German-French Maize Breeders School, May 2017, Hohenheim, Germany
Conference papers hal-02786301v1

Genome-wide SNP genotyping of DNA pools identifies original landraces to enrich maize breeding genepools

Stephane S. Nicolas , Mariangela Arca , Tristan Mary-Huard , Marie-Christine Le Paslier , Cyril Bauland
4. International Symposium on Genomics of Plant Genetic Resources (GPGR4), Sep 2017, Giessen, Germany
Conference papers hal-02785295v1

Heterosis in maize : intermated recombinant inbred lines and their immortalized F2 reveal QTLs with dominant effects but no overdominance

Julie Fievet , Sarah Ben Sadoun , Tristan Mary , Stephane Nicolas , Matthieu Falque
59. Maize Genetics Conference, Mar 2017, Saint-Louis, United States
Conference papers hal-01569899v1

Towards genome-wide association studies under abiotic stress in Vitis vinifera

Agnes Doligez , Loic Le Cunff , Timothée Flutre , Amandine Launay , Stephane Nicolas
Genetic resources section meeting of Eucarpia, May 2017, Montpellier, France
Conference papers hal-01603111v1

Association mapping for transition to autotrophic growth under chilling conditions in maize

Christophe Clipet , J.F. Hû , Renaud Rincent , Sandrine Negro , Stephane Nicolas
Eucarpia 2016. Plant Breeding: the Art of Bringing Science to Life, Aug 2016, Zürich, Switzerland
Conference papers hal-01603576v1

Genome-wide association study between 60 000 Present/Absent Variants and 29 agronomic traits using a new high throughput genotyping array

Clément Mabire , Jorge Duarte , Jean-Philippe Pichon , Johann Joets , Aude Darracq
Workshop Series DynaGeV (Dynamique des Génomes Végétaux), Jul 2016, Paris, France
Conference papers hal-02795575v1

Screening germplasm for adaptation to drought and temperature

Lucie Pinasseau , Agnes Doligez , Angelique Adiveze , Agnès Ageorges , Dalel Ahmed
Innovine, innovation in vineyard, 2016, Toulouse, France. 2 p
Conference papers hal-02798435v1

Combining bulk segregant analysis with high-troughput resequencing to map and clone natural mutations involved in trait variation: First lessons from the early flowering time recessive mutation F7p

Stephane S. Nicolas
Colloque EPGV 2016 "Détection, Gestion et Analyse du Polymorphisme des Génomes Végétaux", Oct 2016, Angers, France
Conference papers hal-02795374v1

A new and high-throughput DNA pooling method based on 50K illumina maize array to unravel genetic diversity within maize landraces germplasm and identify original genetic ressources for prebreeding

Mariangela Arca , Tristan Mary-Huard , Brigitte Gouesnard , Marie-Christine Le Paslier , Cyril Bauland
23. Eucarpia Maize and Sorghum conference on Genomics and Phenomics for Model-Based Maize and Sorghum Breeding, Agence Nationale de la Recherche (ANR). FRA., Jun 2015, Montpellier, France
Conference papers hal-02799117v1

GnpIS-Asso : A Generic Database for Managing and Exploiting Plant Genetic Association Studies Results Using High Throughput Genotyping and Phenotyping Data

Delphine Steinbach , Guillaume Merceron , Célia Michotey , Raphaël-Gauthier Flores , Nacer Mohellibi
23. Plant and Animal Genome, Jan 2015, San Diego, United States
Conference papers hal-01174322v1

A new high-throughput approach to characterize Presence/Absence Variant in Maize based on Affymetrix technology

Stephane S. Nicolas , Aude Darracq , Ali Pirani , Hélène Rimbert , Clément Mabire
Workshop Series DynaGeV (Dynamique des Génomes Végétaux), May 2015, Toulouse, France
Conference papers hal-02795342v1
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Genetic variability of the sensitivity of grain number to drought and high temperature in maize

Emilie Millet , Sandra Silvia Negro , Willem Kruijer , Stephane S. Nicolas , Fred van Eeuwijk
Recent progress in drought tolerance from genetics to modelling, Jun 2015, Montpellier, France
Conference papers hal-02740735v1

Genetic diversity, grape evolution and usefulness of natural variation for the understanding of complex traits in grape and breeding

Patrice P. This , Jean-Michel Boursiquot , Thierry Lacombe , Stephane S. Nicolas , Valerie V. Laucou
11. International conference on grape breeding and genetics, Jul 2014, Beijing, China
Conference papers hal-02794117v1

A generic tool for managing and exploiting genetic association studies results using high throughput genotyping and phenotyping

Célia Michotey , Frédéric Sapet , Pierre Dubreuil , Jacques Le Gouis , Mathilde Causse
Plant Genomics Seminar 2012, Apr 2012, Pont-Royal en Provence, France
Conference papers hal-01268379v1

Genetic structure and linkage disequilibrium in 4 Vitis species

Patrice This , Stephane Nicolas , Jean-Pierre Peros , Thierry Lacombe , Loic Le Cunff
Plant and Animal Genomes Conference, Jan 2011, San Diego, California, United States
Conference papers hal-01506173v1

Genetic structure and linkage disequilibrium in four Vitis species

Stephane Nicolas , Jean-Pierre Peros , Patrice P. This , Thierry Lacombe , L. Le Cunff
10. International Conference on Grapevine Breeding and Genetics, Aug 2010, Geneva (N.Y.), United States
Conference papers hal-02756085v1

Allele mining in grape for the analysis of complex traits

Roberto Bacilieri , Stephane Nicolas , Richard Bounon , Alexis Dereeper , Marie-Christine Le Paslier
18. Conference, Jan 2010, San Diego, United States
Conference papers hal-02754346v1

Natural variation in maize root hydraulic architecture may offer new insights into plant drought responses

Oh Jeonghwa , Louai Rishmawi , Tournaire-Roux Colette , Cyril Bauland , Laura Gallo
66th Annual Maize Genetics Meeting will be held in-person from, Feb 2024, Raleigh, NC, USA, France
Conference poster hal-04519703v1

Maize root hydraulic architecture and its response to water deficit

Virginia Protto , Louai Rishmawi , J Oh , Xuelian Li , Laura Gallo
10th International Symposium on Root Development, May 2023, Ghent, Belgium.
Conference poster hal-04466536v1
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Presence/absence variations and SNPs equally contribute to the variations of protein and metabolite abundance

Yacine Djabali , Melisande Blein-Nicolas , Annick Moing , Jorge Duarte , Stéphane Bernillon
Analytics 2022, Sep 2022, Nantes, France.
Conference poster hal-03879730v1

Maize root hydraulic architecture and its response to water deficit

Virginia Protto , Louai Rishmawi , Yann Boursiac , Colette Tournaire-Roux , Fabrice Bauget
ISRR11 and ROOTING2021 meeting « Roots never sleep », May 2021, Online Virtual, United States.
Conference poster hal-04167184v1

Genetic variability of the expression of plasma membrane aquaporins in maize leaves: from eQTLs to characterization of cis-and trans-acting regulatory factors

Laurie Maistriaux , Maxime J. Laurent , Estelle Teirlinckx , Linda Jeanguenin , Santiago Alvarez Prado
63rd Annual Maize Genetics Meeting, Mar 2021, Virtual, United States
Conference poster hal-03368769v1

Maize root hydraulic architecture and its response to water deficit

Virginia Protto , Louai Rishmawi , Yann Boursiac , Colette Tournaire-Roux , Fabrice Bauget
63rd Annual Maize Genetics Meeting, Mar 2021, Virtual, United States.
Conference poster hal-03368767v1

Presence/absence variations and SNPs equally contribute to the variations of protein and metabolite abundance

Yacine Djabali , Mélisande Blein , Annick Moing , Jorge Duarte , Thierry Berton
63rd Annual Maize Genetics Meeting, Mar 2021, Virtual, United States
Conference poster hal-03368764v1

Responses to selection for adaptation to temperate conditions in tropical drought tolerant maize production

Brigitte Gouesnard , Anne Zanetto , Carine Palaffre , Romain Chapuis , Mariangela Arca
3. Harlan International Symposium : Harlan III, Jun 2019, Montpellier, France. , 2019, Third Jack R. Harlan International Symposium Dedicated to the Origins of Agriculture and the Domestication, Evolution, and Utilization of Genetic Resources
Conference poster hal-02736402v1

Diversity analysis within a collection of 1191 flint maize inbred lines using genotyping-by-sequencing

Brigitte Gouesnard , Sandra Silvia Negro , Amélie Laffray , Jeff Glaubitz , A.E. Melchinger
3. Harlan International Symposium : Harlan III, Jun 2019, Montpellier, France. , 2019, Third Jack R. Harlan International Symposium Dedicated to the Origins of Agriculture and the Domestication, Evolution, and Utilization of Genetic Resources
Conference poster hal-02734558v1

Expanding european flint maize panels for genome-wide association and genomic selection studies

Alain Charcosset , Stephane S. Nicolas , Delphine Madur , Valerie Combes , Sophie Pin
61. Annual maize genetics conference, Mar 2019, Saint-Louis, Missouri, United States. , 335 p., 2019, 61st Annual Maize Genetics Conference Program and Abstracts
Conference poster hal-02735057v1
Image document

Systems genetics of drought-related traits in maize

Melisande Blein-Nicolas , Sandra Negro , Thierry Balliau , Claude Welcker , Llorenç Cabrera-Bosquet
Spectrométrie de Masse et Analyse Protéomique (SMAP), Sep 2019, Strasbourg, France.
Conference poster hal-03879878v1

Diversity analysis within a collection of 1191 flint maize inbred lines using genotyping-by-sequencing

Brigitte Gouesnard , Sandra Negro , Amélie Laffray , Jeff Glaubitz , Albrecht Melchinger
60. Annual Maize Genetics Conference, Mar 2018, Saint-Malo, France. , 253 p., 2018, 60th Annual Maize Genetics Conference Program and Abstracts
Conference poster hal-02734955v1

Genome-wide SNP genotyping of DNA pools identifies original landraces to enrich maize breeding pools

Stephane S. Nicolas , Mariangela Arca , Tristan Mary-Huard , Marie-Christine Le Paslier , Cyril Bauland
60. Annual Maize Genetics Conference, Mar 2018, Saint-Malo, France. , 253 p., 2018, 60th Annual Maize Genetics Conference Program and Abstracts
Conference poster hal-02733631v1

Development of a new high-throughput 105K presence/absence variation genotyping array for quantitative genetic studies.

C. Mabire , J. Duarte , A. Darracq , A. Piranni , H. Rimbert
60th Annual Maize Genetics Conference, Mar 2018, Saint-Malo, France
Conference poster hal-04478801v1

Genotyping-by-sequencing highlights original diversity patterns within a European collection of 1191 maize flint lines, as compared to the maize USDA genebank

Brigitte Gouesnard , Sandra Negro , Amélie Laffray , Jeff Glaubitz , Albrecht Melchinger
60. Annual Maize Genetics Conference, Mar 2018, Saint-Malo, France. , 253 p., 2018, 60th Annual Maize Genetics Conference Program and Abstracts
Conference poster hal-02734953v1

Systems genetics of drought-related traits in maize

Melisande Blein-Nicolas , Sandra Negro , Thierry Balliau , Claude Welcker , Llorenç Cabrera-Bosquet
60th Annual Maize Genetics Conference, Mar 2018, Paris, France
Conference poster hal-03879934v1
Image document

Genome wide association study for protein expression under normal and water deficit conditions in maize leaves

Melisande Blein-Nicolas , Sandra Negro , Thierry Balliau , Claude Welcker , Llorenç Cabrera-Bosquet
Spectrométrie de Masse, Métabolomique et Analyse Protéomique (SMMAP) 2017, Oct 2017, Marne-la-Vallée, France.
Conference poster hal-03879943v1
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Exploring QTLxE in a network of fields: identification of QTLs associated with scenarios of heat and drought for predicting yields in future climates

Emilie Millet , W. Kruijer , Stephane Nicolas , Aude Coupel-Ledru , Alain Charcosset
Interdrought V, Feb 2017, Hyderabad, India. 2017
Conference poster hal-01605102v1

Diversity analysis within a collection of 1191 Flint collection using Genotyping By Sequencing

Brigitte Gouesnard , Sandra Negro , Amélie Laffray , Jeff Glaubitz , Albrecht Melchinger
4. International Symposium on Genomics of Plant Genetic Resources (GPGR4), Sep 2017, Giessen, Germany. , 2017
Conference poster hal-02789732v1
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BioMercator : A complete framework to integrate QTL, meta-QTL, genome annotation and genome-wide association studies

Yannick de Oliveira , Lydia Ait-Braham , Johann Joets , Clément Mabire , Sandra Negro
5ième meeting annuel d’AMAIZING, Nov 2016, Paris, France
Conference poster hal-01404747v1
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Towards genome-wide association studies under abiotic stress in Vitis vinifera

Agnes Doligez , Loic L. Le Cunff , Timothée Flutre , Amandine Launay , Stephane S. Nicolas
ClimWine 2016 (Sustainable grape and wine production in the context of climate change), Apr 2016, Bordeaux, France. 152 p., 2016, Sustainable grape and wine production in the context of climate change
Conference poster hal-02742772v1

Comparison of High-Throughput Genotyping Technologies in Maize: Increase in number of regions detected in association genetics

Sandra Silvia Negro , Emilie Millet , W. Kruijer , Delphine Madur , Marie-Christine Le Paslier
Recent progress in drought tolerance from genetics to modelling, Jun 2015, Montpellier, France. 2015
Conference poster hal-01535330v1

Adaptation to temperate conditions of sub-tropical drought tolerant maize populations

Brigitte Gouesnard , Anne Zanetto , Mariangela Arca , Stephane S. Nicolas , Alain A. Charcosset
Recent progress in drought tolerance from genetics to modelling, Jun 2015, Montpellier, France. 2015
Conference poster hal-02743412v1

Genetic structure and linkage disequilibrium in 4 species of the Vitis genus

Patrice P. This , Stephane Nicolas , Alexis Dereeper , Agnès Doligez , Jean-Pierre Peros
Génoplante, Mar 2010, Pont Royal, France. 2010
Conference poster hal-02818909v1

Genetic structure and linkage disequilibrium in 4 Vitis species

Stephane Nicolas , Jean-Pierre Peros , Patrice P. This , Thierry Lacombe , Valerie V. Laucou
Grapevine breeding and genetics, Aug 2010, Geneva, New York, United States. , 2010
Conference poster hal-02822150v1

SNiPlay : A web application for detection, management and analysis of SNP

Alexis Dereeper , Stephane Nicolas , Loic L. Le Cunff , Roberto Bacilieri , Agnès Doligez
10. international conference on grapevine breeding and genetics, Aug 2010, Geneva (New York), United States. 2010
Conference poster hal-02824316v1
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metaGE: Investigating Genotype × Environment interactions through meta-analysis

Annaïg de Walsche , Alexis Vergne , Renaud Rincent , Fabrice Roux , Stephane Nicolas
2024
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Large genetic variability of maize leaf palatability to european corn borer : metabolic insights

Inoussa Sanane , Stephane Nicolas , Cyril Bauland , Frédéric Marion-Poll , Camille Noûs
2023
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metaGE: Investigating Genotype × Environment interactions through meta-analysis

Annaïg de Walsche , Alexis Vergne , Renaud Rincent , Fabrice Roux , Stephane Nicolas
2023
Preprints, Working Papers, ... hal-04225243v1

Diversity patterns and selective sweeps in a Southeast European panel of maize inbred lines as combined with two West European panels

Vlatko Galić , Violeta Anđelković , Natalija Kravić , Nikola Grčić , Tatjana Ledenčan
2021
Preprints, Working Papers, ... hal-03372006v1
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Genome-wide SNP genotyping of DNA pools identifies untapped landraces and genomic regions that could enrich the maize breeding pool

Mariangela Arca , Brigitte Gouesnard , Tristan Mary-Huard , Marie-Christine Le Paslier , Cyril Bauland
2020
Preprints, Working Papers, ... hal-02965049v1
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Deciphering the genetic diversity of landraces with high-throughput SNP genotyping of DNA bulks: methodology and application to the maize 50k array Mariangela Arca

Mariangela Arca , Tristan Mary-Huard , Cyril Bauland , Brigitte Gouesnard , Aurélie Berard
2020
Preprints, Working Papers, ... hal-02965048v1
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Genetic diversity of maize landraces from the South-West of France

Yacine Diaw , Christine Tollon-Cordet , Alain Charcosset , Stephane Nicolas , Delphine Madur
2020
Preprints, Working Papers, ... hal-02965051v1
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Integrating proteomics and genomics into systems genetics provides novel insights into the mechanisms of drought tolerance in maize

M. Blein , Sandra Silvia Negro , Thierry Balliau , Claude Welcker , Llorenç Cabrera Bosquet
2019
Preprints, Working Papers, ... hal-02788569v1
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High throughput genotyping of structural variations in a complex plant genome using an original Affymetrix® Axiom® array

Clement Mabire , Duarte Jorge , Aude Darracq , Ali Pirani , Hélène Rimbert
2018
Preprints, Working Papers, ... hal-02788790v1
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Genotyping-by-sequencing and microarrays are complementary for detecting quantitative trait loci by tagging different haplotypes in association studies

Sandra Silvia Negro , Emilie Millet , Delphine Madur , Cyril Bauland , Valerie Combes
2018
Preprints, Working Papers, ... hal-02786986v1