Stéphane Nicolas

43%
Libre accès
115
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Publications

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metaGE: Investigating genotype x environment interactions through GWAS meta-analysis

Annaïg de Walsche , Alexis Vergne , Renaud Rincent , Fabrice Roux , Stéphane Nicolas et al.
PLoS Genetics, 2025, 21, pp.e1011553. ⟨10.1371/journal.pgen.1011553⟩
Article dans une revue hal-04994005 v1
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Genetic and Phenotypic Evaluation of European Maize Landraces as a Tool for Conservation and Valorization of Agrobiodiversity

Carlotta Balconi , Agustin Galaretto , Rosa Ana Malvar , Stéphane D Nicolas , Rita Redaelli et al.
Biology, 2024, 13 (6), pp.454. ⟨10.3390/biology13060454⟩
Article dans une revue hal-04645117 v1

High-dimensional multi-omics measured in controlled conditions are useful for maize platform and field trait predictions

Baber Ali , Bertrand Huguenin-Bizot , Maxime J Laurent , François Chaumont , Laurie Maistriaux et al.
TAG Theoretical and Applied Genetics, 2024, 137 (7), pp.175. ⟨10.1007/s00122-024-04679-w⟩
Article dans une revue hal-04677733 v1
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Genetic variability of aquaporin expression in maize: From eQTLs to a MITE insertion regulating PIP2;5 expression

Laurie C Maistriaux , Maxime J Laurent , Linda Jeanguenin , Santiago Alvarez Prado , Joseph Nader et al.
Plant Physiology, 2024, 196 (1), pp.368-384. ⟨10.1093/plphys/kiae326⟩
Article dans une revue hal-04639221 v1
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Genotyping of DNA pools identifies untapped landraces and genomic regions to develop next‐generation varieties

Mariangela Arca , Brigitte Gouesnard , Tristan Mary‐huard , Marie‐christine Le Paslier , Cyril Bauland et al.
Plant Biotechnology Journal, 2023, 21, pp.1123-1139. ⟨10.1111/pbi.14022⟩
Article dans une revue hal-04103846 v2
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Genetic diversity and selection signatures in a gene bank panel of maize inbred lines from Southeast Europe compared with two West European panels

Vlatko Galić , Violeta Anđelković , Natalija Kravić , Nikola Grčić , Tatjana Ledenčan et al.
BMC Plant Biology, 2023, 23 (1), pp.315. ⟨10.1186/s12870-023-04336-2⟩
Article dans une revue hal-04189388 v1
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Genetic diversity of maize landraces from the South-West of France

Yacine Diaw , Christine Tollon-Cordet , Alain Charcosset , Stéphane D. Nicolas , Delphine Madur et al.
PLoS ONE, 2021, 16 (2), pp.e0238334. ⟨10.1371/journal.pone.0238334⟩
Article dans une revue hal-03210018 v1
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Deciphering the Genetic Diversity of Landraces With High-Throughput SNP Genotyping of DNA Bulks: Methodology and Application to the Maize 50k Array

Mariangela Arca , Tristan Mary-Huard , Brigitte Gouesnard , Aurélie Bérard , Cyril Bauland et al.
Frontiers in Plant Science, 2021, 11, ⟨10.3389/fpls.2020.568699⟩
Article dans une revue hal-03368756 v1
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Maize adaptation across temperate climates was obtained via expression of two florigen genes

Sara Castelletti , Aude Coupel-Ledru , Italo Granato , Carine Palaffre , Llorenç Cabrera-Bosquet et al.
PLoS Genetics, 2020, 16 (7), pp.e1008882. ⟨10.1371/journal.pgen.1008882⟩
Article dans une revue hal-02916912 v1
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A systems genetics approach reveals environment-dependent associations between SNPs, protein coexpression, and drought-related traits in maize

Melisande Blein-Nicolas , Sandra Sylvia Negro , Thierry Balliau , Claude Welcker , Llorenç Cabrera-Bosquet et al.
Genome Research, 2020, 30 (11), pp.1593-1604. ⟨10.1101/gr.255224.119⟩
Article dans une revue hal-03009577 v1
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Genotyping-by-sequencing and SNP-arrays are complementary for detecting quantitative trait loci by tagging different haplotypes in association studies

Sandra Silvia Negro , Emilie Millet , Delphine Madur , Cyril Bauland , Valerie Combes et al.
BMC Plant Biology, 2019, 19 (1), ⟨10.1186/s12870-019-1926-4⟩
Article dans une revue hal-02627073 v1

High throughput genotyping of structural variations in a complex plant genome using an original Affymetrix® axiom® array

Clément Mabire , Jorge Duarte , Aude Darracq , Ali Pirani , Hélène Rimbert et al.
BMC Genomics, 2019, 20 (1), ⟨10.1186/s12864-019-6136-9⟩
Article dans une revue hal-02393099 v1

CORRECTION: Exploiting the Genetic Diversity of Maize Using a Combined Metabolomic, Enzyme Activity Profiling, and Metabolic Modelling Approach to Link Leaf Physiology to Kernel Yield.

Rafael Canas-Pendon Canas , Zhazira Yesbergenova-Cuny , Margaret Simons , Fabien Chardon , Patrick P. Armengaud et al.
The Plant cell, 2018, 30, pp.946. ⟨10.1105/tpc.18.00273⟩
Article dans une revue hal-02624574 v1
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Sequence analysis of European maize inbred line F2 provides new insights into molecular and chromosomal characteristics of presence/absence variants

Aude Darracq , Clémentine Vitte , Stephane S. Nicolas , Jorge Duarte , Jean-Philippe Pichon et al.
BMC Genomics, 2018, 19 (1), ⟨10.1186/s12864-018-4490-7⟩
Article dans une revue hal-02625253 v1

Exploiting the Genetic Diversity of Maize Using a Combined Metabolomic, Enzyme Activity Profiling, and Metabolic Modeling Approach to Link Leaf Physiology to Kernel Yield.

Rafael Canas-Pendon , Zhazira Yesbergenova-Cuny , Margaret Simons , Fabien Chardon , Patrick Armengaud et al.
The Plant cell, 2017, 29 (5), pp.919-943. ⟨10.1105/tpc.16.00613⟩
Article dans une revue hal-01605953 v1
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Independent introductions and admixtures have contributed to adaptation of European maize and its American counterparts

Jean-Tristan Brandenburg , Tristan Mary , Guillem Rigaill , Sarah J. Hearne , Hélène Corti et al.
PLoS Genetics, 2017, 13 (3), pp.e1006666. ⟨10.1371/journal.pgen.1006666⟩
Article dans une revue hal-01605143 v1

Genotyping-by-sequencing highlights original diversity patterns within a European collection of 1191 maize flint lines, as compared to the maize USDA genebank

Brigitte Gouesnard , Sandra Silvia Negro , Amélie Laffray , Jeff Glaubitz , Albrecht Melchinger et al.
TAG Theoretical and Applied Genetics, 2017, 130 (10), ⟨10.1007/s00122-017-2949-6⟩
Article dans une revue hal-01595534 v1
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Genetic diversity, linkage disequilibrium and power of a large grapevine (Vitis vinifera L) diversity panel newly designed for association studies

Stéphane D. Nicolas , Jean-Pierre Péros , Thierry Lacombe , Amandine Launay , Marie-Christine Le Paslier et al.
BMC Plant Biology, 2016, 16 (1), pp.74. ⟨10.1186/s12870-016-0754-z⟩
Article dans une revue inserm-01322529 v1
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Testing the link between genome size and growth rate in maize

Maud Tenaillon , Doménica Manicacci , Stephane Nicolas , Francois Tardieu , Claude Welcker
PeerJ, 2016, 4, pp.e2408. ⟨10.7717/peerj.2408⟩
Article dans une revue hal-01461166 v1

Genome-wide analysis of yield in Europe: allelic effects as functions of drought and heat scenarios

Emilie Millet , Claude Welcker , Willem Kruijer , Sandra Negro , Aude Coupel-Ledru et al.
Plant Physiology, 2016, 172 (2), ⟨10.1104/pp.16.00621⟩
Article dans une revue hal-01362496 v1

Dent and flint maize diversity panels reveal important genetic potential for increasing biomass production

Renaud Rincent , Stephane S. Nicolas , Sophie Bouchet , T. Altmann , Dominique D. Brunel et al.
TAG Theoretical and Applied Genetics, 2014, 127 (11), pp.2313-2331. ⟨10.1007/s00122-014-2379-7⟩
Article dans une revue hal-02637142 v1

Recovering power in Association Mapping Panels with variable levels of linkage disequilibrium

Renaud Rincent , Laurence Moreau , Hervé Monod , Estelle Kuhn , Albrecht E Melchinger et al.
Genetics, 2014, 197 (1), pp.375-387. ⟨10.1534/genetics.113.159731⟩
Article dans une revue hal-02634244 v1
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Adaptation of maize to temperate climates: mid-density genome-wide association genetics and diversity patterns reveal key genomic regions, with a major contribution of the Vgt2 (ZCN8) locus

Sophie Bouchet , Bertrand Servin , Pascal Bertin , Delphine D. Madur , Valerie V. Combes et al.
PLoS ONE, 2013, 8 (8), ⟨10.1371/journal.pone.0071377⟩
Article dans une revue hal-02652500 v1
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Genetic variability of berry size in grapevine (Vitis vinifera L.)

Cléa Houel , Marie-Laure Magniette , Stéphane D. Nicolas , Thierry Lacombe , Loic Le Cunff et al.
Australian Journal of Grape and Wine Research, 2013, 19 (2), pp.208-220. ⟨10.1111/ajgw.12021⟩
Article dans une revue hal-01223540 v1
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Non-random distribution of extensive chromosome rearrangements in Brassica napus depends on genome organization

Stephane S. Nicolas , Herve H. Monod , Frederique F. Eber , Anne-Marie Chèvre , Eric E. Jenczewski
The Plant Journal, 2012, 70 (4), pp.691 - 703. ⟨10.1111/j.1365-313X.2012.04914.x⟩
Article dans une revue hal-01004194 v1

Diversity and linkage disequilibrium features in a composite public/private dent maize panel: consequences for association genetics as evaluated from a case study using flowering time

Marion Truntzler , N. Ranc , M. C. Sawkins , Stephane S. Nicolas , Doménica Manicacci et al.
TAG Theoretical and Applied Genetics, 2012, 125 (4), pp.731 - 747. ⟨10.1007/s00122-012-1866-y⟩
Article dans une revue istex hal-02643782 v1

Maximizing the reliability of genomic selection by optimizing the calibration set of reference individuals: comparison of methods in two diverse groups of maize inbreds (Zea mays L.)

Renaud Rincent , Denis Laloë , Stephane Nicolas , T. Altmann , Dominique Brunel et al.
Genetics, 2012, 192 (2), pp.715-728. ⟨10.1534/genetics.112.141473⟩
Article dans une revue hal-01019845 v1
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SNiPlay: a web-based tool for detection, management and analysis of SNPs. Application to grapevine diversity projects

Alexis Dereeper , Stephane S. Nicolas , Loïc Le Cunff , Roberto Bacilieri , Agnès Doligez et al.
BMC Bioinformatics, 2011, 12 (134), 14 p. ⟨10.1186/1471-2105-12-134⟩
Article dans une revue hal-02644798 v1

Genetic regulation of meiotic cross-overs between related genomes in brassica napus haploids and hybrids

Stephane Nicolas , Martine Leflon , Hervé Monod , Frédérique Eber , Olivier O. Coriton et al.
The Plant cell, 2009, 21, pp.373-385. ⟨10.1105/tpc.108.062273⟩
Article dans une revue hal-02663581 v1

Chromosome ‘speed dating’ during meiosis of polyploid Brassica hybrids and haploids

Stephane Nicolas , Martine Leflon , Zhiqian Liu , Olivier O. Coriton , Anne-Marie Chèvre et al.
Cytogenetic and Genome Research, 2008, pp.331-338
Article dans une revue hal-02653288 v1

Homeologous recombination plays a major role in chromosome rearrangements that occur during meiosis of Brassica napus haploids

Stephane Nicolas , Guillaume G. Le Mignon , Frederique F. Eber , Olivier O. Coriton , Hervé Monod et al.
Genetics, 2007, 175 (2), pp.487-503. ⟨10.1534/genetics.106.062968⟩
Article dans une revue hal-02668271 v1
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Pipeline for Haplotype Frequencies Estimation from Pooled Targeted Sequencing in Maize

Minguella Raphaël , Aurélie Canaguier , Delphine Madur , Aurélie Bérard , Isabelle Le Clainche et al.
AG France Génomique, Jun 2024, Evry courcouronnes, France. 2013, ⟨10.1093/molbev/mst016⟩
Poster de conférence hal-04670307 v1
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Genomic predictions and Genome-wide association studies on DNA pools to characterize traditional maize landraces and identify genomic regions associated with agronomic traits and environmental adaptation

Sarah Ben-Sadoun , Agustin Oscar Galaretto , Antoine Roux , Brigitte Gouesnard , Alain Charcosset et al.
7. International Conference of Quantitative Genetics (ICQG7), Jul 2024, Vienna, Austria.
Poster de conférence hal-04807728 v1
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Estimation of Haplotype Frequencies from Pooled Targeted Sequencing in Maize Landraces

Minguella Raphaël , Aurélie Canaguier , Delphine Madur , Damien Hinsinger , Stephane Nicolas et al.
2ème carrefour de la sélection maïs, May 2024, Saclay, France. 2013, ⟨10.1093/molbev/mst016⟩
Poster de conférence hal-04670321 v1

Natural variation in maize root hydraulic architecture may offer new insights into plant drought responses

Oh Jeonghwa , Louai Rishmawi , Tournaire-Roux Colette , Cyril Bauland , Laura Gallo et al.
66th Annual Maize Genetics Meeting, Feb 2024, Raleigh, United States.
Poster de conférence hal-04519703 v1

Genomic prediction and landscape genomics in a large maize landraces collection using high-throughput pool genotyping identifies promising sources of diversity for prebreeding

Agustin O. Galaretto , Brigitte Gouesnard , Delphine Madur , Sarah Ben-Sadoun , Sarah Hearne et al.
Plant Biology Europe 2023, Jul 2023, Marseille (13), France
Poster de conférence hal-04225415 v1

Maize root hydraulic architecture and its response to water deficit

Virginia Protto , Louai Rishmawi , J Oh , Xuelian Li , Laura Gallo et al.
10th International Symposium on Root Development, May 2023, Ghent, Belgium.
Poster de conférence hal-04466536 v1
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Presence/absence variations and SNPs equally contribute to the variations of protein and metabolite abundance

Yacine Djabali , Melisande Blein-Nicolas , Annick Moing , Jorge Duarte , Stéphane Bernillon et al.
Analytics 2022, Sep 2022, Nantes, France.
Poster de conférence hal-03879730 v1

Maize root hydraulic architecture and its response to water deficit

Virginia Protto , Louai Rishmawi , Yann Boursiac , Colette Tournaire-Roux , Fabrice Bauget et al.
63rd Annual Maize Genetics Meeting, Mar 2021, Virtual, United States.
Poster de conférence hal-03368767 v1

Genetic variability of the expression of plasma membrane aquaporins in maize leaves: from eQTLs to characterization of cis-and trans-acting regulatory factors

Laurie Maistriaux , Maxime J. Laurent , Estelle Teirlinckx , Linda Jeanguenin , Santiago Alvarez Prado et al.
63rd Annual Maize Genetics Meeting, Mar 2021, Virtual, United States
Poster de conférence hal-03368769 v1

Maize root hydraulic architecture and its response to water deficit

Virginia Protto , Louai Rishmawi , Yann Boursiac , Colette Tournaire-Roux , Fabrice Bauget et al.
ISRR11 and ROOTING2021 meeting « Roots never sleep », May 2021, Online Virtual, United States.
Poster de conférence hal-04167184 v1

Presence/absence variations and SNPs equally contribute to the variations of protein and metabolite abundance

Yacine Djabali , Mélisande Blein , Annick Moing , Jorge Duarte , Thierry Berton et al.
63rd Annual Maize Genetics Meeting, Mar 2021, Virtual, United States
Poster de conférence hal-03368764 v1
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Systems genetics of drought-related traits in maize

Melisande Blein-Nicolas , Sandra Negro , Thierry Balliau , Claude Welcker , Llorenç Cabrera-Bosquet et al.
Spectrométrie de Masse et Analyse Protéomique (SMAP), Sep 2019, Strasbourg, France.
Poster de conférence hal-03879878 v1

Expanding european flint maize panels for genome-wide association and genomic selection studies

Alain Charcosset , Stephane S. Nicolas , Delphine Madur , Valerie Combes , Sophie Pin et al.
61. Annual maize genetics conference, Mar 2019, Saint-Louis, Missouri, United States. , 335 p., 2019, 61st Annual Maize Genetics Conference Program and Abstracts
Poster de conférence hal-02735057 v1

Responses to selection for adaptation to temperate conditions in tropical drought tolerant maize production

Brigitte Gouesnard , Anne Zanetto , Carine Palaffre , Romain Chapuis , Mariangela Arca et al.
3. Harlan International Symposium : Harlan III, Jun 2019, Montpellier, France. , 2019, Third Jack R. Harlan International Symposium Dedicated to the Origins of Agriculture and the Domestication, Evolution, and Utilization of Genetic Resources
Poster de conférence hal-02736402 v1

Diversity analysis within a collection of 1191 flint maize inbred lines using genotyping-by-sequencing

Brigitte Gouesnard , Sandra Silvia Negro , Amélie Laffray , Jeff Glaubitz , A.E. Melchinger et al.
3. Harlan International Symposium : Harlan III, Jun 2019, Montpellier, France. , 2019, Third Jack R. Harlan International Symposium Dedicated to the Origins of Agriculture and the Domestication, Evolution, and Utilization of Genetic Resources
Poster de conférence hal-02734558 v1

Systems genetics of drought-related traits in maize

Melisande Blein-Nicolas , Sandra Negro , Thierry Balliau , Claude Welcker , Llorenç Cabrera-Bosquet et al.
60th Annual Maize Genetics Conference, Mar 2018, Paris, France
Poster de conférence hal-03879934 v1

Sequence analysis of european maize inbred line F2 provides new insights into molecular and chromosomal characteristics of presence/absence variants.

A. Darracq , Clémentine Vitte , S. Nicolas , J. Duarte , J.P. Pichon et al.
60th Annual Maize Genetics Conference, Mar 2018, Saint-Malo, France
Poster de conférence hal-04478798 v1

Genotyping-by-sequencing highlights original diversity patterns within a European collection of 1191 maize flint lines, as compared to the maize USDA genebank

Brigitte Gouesnard , Sandra Negro , Amélie Laffray , Jeff Glaubitz , Albrecht Melchinger et al.
60. Annual Maize Genetics Conference, Mar 2018, Saint-Malo, France. , 253 p., 2018, 60th Annual Maize Genetics Conference Program and Abstracts
Poster de conférence hal-02734953 v1

Development of a new high-throughput 105K presence/absence variation genotyping array for quantitative genetic studies.

C. Mabire , J. Duarte , A. Darracq , A. Piranni , H. Rimbert et al.
60th Annual Maize Genetics Conference, Mar 2018, Saint-Malo, France
Poster de conférence hal-04478801 v1

Genome-wide SNP genotyping of DNA pools identifies original landraces to enrich maize breeding pools

Stephane S. Nicolas , Mariangela Arca , Tristan Mary-Huard , Marie-Christine Le Paslier , Cyril Bauland et al.
60. Annual Maize Genetics Conference, Mar 2018, Saint-Malo, France. , 253 p., 2018, 60th Annual Maize Genetics Conference Program and Abstracts
Poster de conférence hal-02733631 v1

Diversity analysis within a collection of 1191 flint maize inbred lines using genotyping-by-sequencing

Brigitte Gouesnard , Sandra Negro , Amélie Laffray , Jeff Glaubitz , Albrecht Melchinger et al.
60. Annual Maize Genetics Conference, Mar 2018, Saint-Malo, France. , 253 p., 2018, 60th Annual Maize Genetics Conference Program and Abstracts
Poster de conférence hal-02734955 v1
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Exploring QTLxE in a network of fields: identification of QTLs associated with scenarios of heat and drought for predicting yields in future climates

Emilie Millet , W. Kruijer , Stephane Nicolas , Aude Coupel-Ledru , Alain Charcosset et al.
Interdrought V, Feb 2017, Hyderabad, India. 2017
Poster de conférence hal-01605102 v1
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Genome wide association study for protein expression under normal and water deficit conditions in maize leaves

Melisande Blein-Nicolas , Sandra Negro , Thierry Balliau , Claude Welcker , Llorenç Cabrera-Bosquet et al.
Spectrométrie de Masse, Métabolomique et Analyse Protéomique (SMMAP) 2017, Oct 2017, Marne-la-Vallée, France.
Poster de conférence hal-03879943 v1

Diversity analysis within a collection of 1191 Flint collection using Genotyping By Sequencing

Brigitte Gouesnard , Sandra Negro , Amélie Laffray , Jeff Glaubitz , Albrecht Melchinger et al.
4. International Symposium on Genomics of Plant Genetic Resources (GPGR4), Sep 2017, Giessen, Germany. , 2017
Poster de conférence hal-02789732 v1
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BioMercator : A complete framework to integrate QTL, meta-QTL, genome annotation and genome-wide association studies

Yannick de Oliveira , Lydia Ait-Braham , Johann Joets , Clément Mabire , Sandra Negro et al.
5ième meeting annuel d’AMAIZING, Nov 2016, Paris, France
Poster de conférence hal-01404747 v1
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Towards genome-wide association studies under abiotic stress in <em>Vitis vinifera</em>

Agnes Doligez , Loic L. Le Cunff , Timothée Flutre , Amandine Launay , Stephane S. Nicolas et al.
ClimWine 2016 (Sustainable grape and wine production in the context of climate change), Apr 2016, Bordeaux, France. 152 p., 2016, Sustainable grape and wine production in the context of climate change
Poster de conférence hal-02742772 v1

Comparison of High-Throughput Genotyping Technologies in Maize: Increase in number of regions detected in association genetics

Sandra Silvia Negro , Emilie Millet , W. Kruijer , Delphine Madur , Marie-Christine Le Paslier et al.
Recent progress in drought tolerance from genetics to modelling, Jun 2015, Montpellier, France. 2015
Poster de conférence hal-01535330 v1

Adaptation to temperate conditions of sub-tropical drought tolerant maize populations

Brigitte Gouesnard , Anne Zanetto , Mariangela Arca , Stephane S. Nicolas , Alain A. Charcosset et al.
Recent progress in drought tolerance from genetics to modelling, Jun 2015, Montpellier, France. 2015
Poster de conférence hal-02743412 v1

Genetic structure and linkage disequilibrium in 4 species of the Vitis genus

Patrice P. This , Stephane Nicolas , Alexis Dereeper , Agnès Doligez , Jean-Pierre Peros et al.
Génoplante, Mar 2010, Pont Royal, France. 2010
Poster de conférence hal-02818909 v1

Genetic structure and linkage disequilibrium in 4 Vitis species

Stephane Nicolas , Jean-Pierre Peros , Patrice P. This , Thierry Lacombe , Valerie V. Laucou et al.
Grapevine breeding and genetics, Aug 2010, Geneva, New York, United States. , 2010
Poster de conférence hal-02822150 v1

SNiPlay : A web application for detection, management and analysis of SNP

Alexis Dereeper , Stephane Nicolas , Loic L. Le Cunff , Roberto Bacilieri , Agnès Doligez et al.
10. international conference on grapevine breeding and genetics, Aug 2010, Geneva (New York), United States. 2010
Poster de conférence hal-02824316 v1
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MineLandDiv - Mining Allelic Diversity in maize Landraces for Tolerance to Abiotic and Biotic stresses

Stephane Nicolas
FACCE-JPI and GEH Joint Conference 2024 "Toward New Horizons Sustainable solutions in Agri-Food and Biotechnology", FACCE-JPO and Green Era-Hub (GEH), Oct 2024, Berlin, Germany
Communication dans un congrès hal-04807770 v1

Whole genome sequencing of 650 maize lines from two association panel, an unprecedented ressource for deciphering genetic diversity and better understanding genotype-phenotype relationship

Stephane Nicolas
Séminaire de Clôture du projet SeqOccin, GenoToul Get Plage; GenoToul Bioinformatics, Oct 2023, Toulouse, France
Communication dans un congrès hal-04808013 v1
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Genome-wide association studies on DNA pools identifies promising maize landraces and genomic regions to develop next generation varieties

Stéphane Nicolas , Antoine Roux , Sarah Ben-Sadoun , Mariangela Arca , Agustin O. Galaretto et al.
Plant Biology Europe 2023, Jul 2023, Marseille, France
Communication dans un congrès hal-04225361 v1

Genomic selection and Genome-wide association studies on DNA pools identifies promising maize landraces and genomic regions to develop next generation varieties

Stephane Nicolas , Antoine Roux , Sarah Ben-Sadoun , Mariangela Arca , Tristan Mary-Huard et al.
2ième Colloque INRAE Genomics, INRAE Genomics, Nov 2023, Bordeaux, France
Communication dans un congrès hal-04808004 v1

Proteomics-based systems approach of maize response to water deficit

Melisande Blein-Nicolas , Yacine Djabali , Claude Welcker , Llorenç Cabrera-Bosquet , Stephane Nicolas et al.
5th InPPO Conference, May 2023, Thessalonique, Greece
Communication dans un congrès hal-04302629 v1

Caractériser la diversité génétique et application à l’étude de caractères

Stephane Nicolas , Mariagela Arca , Yacine Diaw , Antoine Roux , Romane Guilbaud et al.
1er Carrefour de la sélection du Maïs, Pro Maïs; INRAE, Nov 2022, Montpellier, France
Communication dans un congrès hal-04808039 v1

Rôles des variations structurales dans la construction des caractères moléculaires et phénotypiques

Yacine Djabali , Melisande Blein-Nicolas , Stephane Nicolas
Journées du Protéome Vert, Jun 2022, Gif-sur-Yette, France
Communication dans un congrès hal-03878368 v1

Développement d'une puce de génotypage haut débit des Insertions/Délétions chez le maïs : Application aux études d'associations pangénomiques

Clément Mabire , Romane Guilbaud , Jorge Duarte , Aude Darracq , Ali Pirani et al.
Rencontre Science et Parteneriat Plant2Pro, Plant2Pro, Jun 2022, Paris, France
Communication dans un congrès hal-04807992 v1

Presence/Absence variation contributes to adaptation, agronomic traits variation and hybrid performances in maize

Clément Mabire , Romane Guilbaud , Jorge Duarte , Aude Darracq , Ali Piranni et al.
XXVth EUCARPIA Maize and Sorghum Conference – Current challenges and new methods for Maize and Sorghum Breeding, May 2022, Belgrade, Serbia
Communication dans un congrès hal-04225603 v1

A systems approach of drought tolerance in maize

Melisande Blein-Nicolas , Sandra Negro , Thierry Balliau , Claude Welcker , Llorenç Cabrera et al.
AMAIZING Final Conference, Sep 2021, Visioconférence, France
Communication dans un congrès hal-03879824 v1

A systems approach of drought response in maize

Melisande Blein-Nicolas , Yacine Djabali , Thierry Balliau , Llorenç Cabrera , Claude Welcker et al.
Journée SPS-CLAND, Sep 2021, Visioconférence, France
Communication dans un congrès hal-03879816 v1

A systems approach of drought response in maize

Melisande Blein-Nicolas , Yacine Djabali , Thierry Balliau , Llorenç Cabrera-Bosquet , Sandra Negro et al.
Séminaire du département des Science de l'Environnement de l'Université de Bordeaux, Nov 2021, Bordeaux, France
Communication dans un congrès hal-03879809 v1

Systems genetics of drought-related traits in maize

Melisande Blein-Nicolas , Sandra Negro , Thierry Balliau , Claude Welcker , Llorenç Cabrera-Bosquet et al.
Evolutionary Systems Biology congress, Feb 2020, Cambridge, United Kingdom
Communication dans un congrès hal-03879843 v1

Genotyping-by-sequencing and SNP arrays are complementary for detecting quantitative trait loci by tagging different haplotypes in association studies

Stéphane Nicolas , Sandra Negro , Emilie Millet , Delphine Madur , Cyril Bauland et al.
XXIVth EUCARPIA Maize and Sorghum Conference, Integrating quantitative and molecular genetics to develop new breeding methods in maize and sorghum, Oct 2019, Freising, Germany
Communication dans un congrès hal-03368737 v1

Integrating proteomics and genomics into systems genetics to better understand the mechanisms of drought tolerance in maize

Melisande Blein-Nicolas , Sandra Negro , Thierry Balliau , Claude Welcker , Llorenç Cabrera et al.
Journée SFEAP-SFSM, Apr 2019, Paris, France
Communication dans un congrès hal-03879865 v1

Genome-wide SNP genotyping of DNA pools identifies original landraces to enrich maize breeding genepools

Stephane Nicolas , Mariangela Arca , Tristan Mary Huard , Marie-Christine Le Paslier , Cyril Bauland et al.
Harlan International Symposium : Harlan III, Jun 2019, Montpellier, France
Communication dans un congrès hal-03368726 v1

Systems genetics of drought tolerance in maize

Melisande Blein-Nicolas , Sandra Negro , Thierry Balliau , Claude Welcker , Llorenç Cabrera-Bosquet et al.
Symposium GisBV, Oct 2019, Paris, France
Communication dans un congrès hal-03879857 v1

Genotyping-by-sequencing and SNP-arrays are complementary for detecting quantitative trait loci by tagging different haplotypes in association studies

Stephane S. Nicolas , Sandra Silvia Negro , Emilie Millet , Delphine Madur , Cyril Bauland et al.
European maize meeting, May 2019, Montpellier, France
Communication dans un congrès hal-02788231 v1

Contribution des Insertion/Délétions à la variations des caractères, l’adaptation et aux performances hybrides au moyen d’une puce de génotypage haut débit

Clément Mabire , Jorge Duarte , Johann Joets , Julie B Fiévet , Romane Guilbaud et al.
Colloque GIS-BV, Jul 2019, Paris, France
Communication dans un congrès hal-02787704 v1
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Regulation of aquaporin expression in maize: proximal and distal eQTLs

Laurie C Maistriaux , Linda Jeanguenin , Santiago Alvarez Prado , Stephane S. Nicolas , Claude Welcker et al.
60. Maize Genetics Conference, Mar 2018, Saint-Malo, France
Communication dans un congrès hal-02737313 v1
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Development of a new high throughput 105K Presence/Absence Variation genotyping array for quantitative genetic studies

Clément Mabire , Jorge Duarte , Aude Darracq , Ali Pirani , Hélène Rimbert et al.
60. Maize Genetics Conference, Mar 2018, St Malo, France
Communication dans un congrès hal-02787197 v1

Design of high-troughput Presence/Absence Variant genotyping array in maize based on Affymetrix Technology

Jorge Duarte , Aude Darracq , Hélène Rimbert , Clementine Vitte , Johann Joets et al.
Colloque EPGV 2018 "Détection, Gestion et Analyse du Polymorphisme des Génomes Végétaux", Oct 2018, Evry, France
Communication dans un congrès hal-02787234 v1

Genome-wide association studies between 60 000 Present/Absent Variants and 29 agronomic traits using a high throughput genotyping array

Stephane S. Nicolas
Colloque EPGV 2018 "Détection, Gestion et Analyse du Polymorphisme des Génomes Végétaux", 2018
Communication dans un congrès hal-02786378 v1

Deciphering the interest of integrating PAV genomic information in genetic analysis by investigating the extent of linkage disequilibrium

Clément Mabire , Jorge Duarte , Delphine Madur , Valerie Combes , Johann Joets et al.
Workshop Series DynaGeV (Dynamique des Génomes Végétaux), Jun 2018, Rennes, France
Communication dans un congrès hal-02786354 v1

Towards genome-wide association studies under abiotic stress in Vitis vinifera

Agnes Doligez , Loic Le Cunff , Timothée Flutre , Amandine Launay , Stephane Nicolas et al.
Genetic resources section meeting of Eucarpia, May 2017, Montpellier, France
Communication dans un congrès hal-01603111 v1

Heterosis in maize : intermated recombinant inbred lines and their immortalized F2 reveal QTLs with dominant effects but no overdominance

Julie Fievet , Sarah Ben Sadoun , Tristan Mary , Stephane Nicolas , Matthieu Falque et al.
59. Maize Genetics Conference, Mar 2017, Saint-Louis, United States
Communication dans un congrès hal-01569899 v1

Genome-wide SNP genotyping of DNA pools identifies original landraces to enrich maize breeding genepools

Stephane S. Nicolas , Mariangela Arca , Tristan Mary-Huard , Marie-Christine Le Paslier , Cyril Bauland et al.
4. International Symposium on Genomics of Plant Genetic Resources (GPGR4), Sep 2017, Giessen, Germany
Communication dans un congrès hal-02785295 v1

GWAS for protein expression under normal and water deficit conditions in maize leaves

Melisande Blein-Nicolas , Thierry Balliau , Llorenç Cabrera-Bosquet , Hélène Corti , Claude Welcker et al.
Journées du Protéome Vert, Mar 2017, Paris, France
Communication dans un congrès hal-03879954 v1

DNA pooling for evaluating originality of the landraces

Stephane S. Nicolas , Mariangela Arca , Tristan Mary-Huard , Brigitte Gouesnard , Marie-Christine Le Paslier et al.
1. German-French Maize Breeders School, May 2017, Hohenheim, Germany
Communication dans un congrès hal-02786301 v1

Combining bulk segregant analysis with high-troughput resequencing to map and clone natural mutations involved in trait variation: First lessons from the early flowering time recessive mutation F7p

Stephane S. Nicolas
Colloque EPGV 2016 "Détection, Gestion et Analyse du Polymorphisme des Génomes Végétaux", Oct 2016, Angers, France
Communication dans un congrès hal-02795374 v1

Genome-wide association study between 60 000 Present/Absent Variants and 29 agronomic traits using a new high throughput genotyping array

Clément Mabire , Jorge Duarte , Jean-Philippe Pichon , Johann Joets , Aude Darracq et al.
Workshop Series DynaGeV (Dynamique des Génomes Végétaux), Jul 2016, Paris, France
Communication dans un congrès hal-02795575 v1

Association mapping for transition to autotrophic growth under chilling conditions in maize

Christophe Clipet , J.F. Hû , Renaud Rincent , Sandrine Negro , Stephane Nicolas et al.
Eucarpia 2016. Plant Breeding: the Art of Bringing Science to Life, Aug 2016, Zürich, Switzerland
Communication dans un congrès hal-01603576 v1

Screening germplasm for adaptation to drought and temperature

Lucie Pinasseau , Agnes Doligez , Angelique Adiveze , Agnès Ageorges , Dalel Ahmed et al.
Innovine, innovation in vineyard, 2016, Toulouse, France. 2 p
Communication dans un congrès hal-02798435 v1
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Genetic variability of the sensitivity of grain number to drought and high temperature in maize

Emilie Millet , Sandra Silvia Negro , Willem Kruijer , Stephane S. Nicolas , Fred van Eeuwijk et al.
Recent progress in drought tolerance from genetics to modelling, Jun 2015, Montpellier, France
Communication dans un congrès hal-02740735 v1

A new and high-throughput DNA pooling method based on 50K illumina maize array to unravel genetic diversity within maize landraces germplasm and identify original genetic ressources for prebreeding

Mariangela Arca , Tristan Mary-Huard , Brigitte Gouesnard , Marie-Christine Le Paslier , Cyril Bauland et al.
23. Eucarpia Maize and Sorghum conference on Genomics and Phenomics for Model-Based Maize and Sorghum Breeding, Agence Nationale de la Recherche (ANR). FRA., Jun 2015, Montpellier, France
Communication dans un congrès hal-02799117 v1

GnpIS-Asso : A Generic Database for Managing and Exploiting Plant Genetic Association Studies Results Using High Throughput Genotyping and Phenotyping Data

Delphine Steinbach , Guillaume Merceron , Célia Michotey , Raphaël-Gauthier Flores , Nacer Mohellibi et al.
23. Plant and Animal Genome, Jan 2015, San Diego, United States
Communication dans un congrès hal-01174322 v1

A new high-throughput approach to characterize Presence/Absence Variant in Maize based on Affymetrix technology

Stephane S. Nicolas , Aude Darracq , Ali Pirani , Hélène Rimbert , Clément Mabire et al.
Workshop Series DynaGeV (Dynamique des Génomes Végétaux), May 2015, Toulouse, France
Communication dans un congrès hal-02795342 v1

Genetic diversity, grape evolution and usefulness of natural variation for the understanding of complex traits in grape and breeding

Patrice P. This , Jean-Michel Boursiquot , Thierry Lacombe , Stephane S. Nicolas , Valerie V. Laucou et al.
11. International conference on grape breeding and genetics, Jul 2014, Beijing, China
Communication dans un congrès hal-02794117 v1

A generic tool for managing and exploiting genetic association studies results using high throughput genotyping and phenotyping

Célia Michotey , Frédéric Sapet , Pierre Dubreuil , Jacques Le Gouis , Mathilde Causse et al.
Plant Genomics Seminar 2012, Apr 2012, Pont-Royal en Provence, France
Communication dans un congrès hal-01268379 v1

Genetic structure and linkage disequilibrium in 4 Vitis species

Patrice This , Stephane Nicolas , Jean-Pierre Peros , Thierry Lacombe , Loic Le Cunff et al.
Plant and Animal Genomes Conference, Jan 2011, San Diego, California, United States
Communication dans un congrès hal-01506173 v1

Allele mining in grape for the analysis of complex traits

Roberto Bacilieri , Stephane Nicolas , Richard Bounon , Alexis Dereeper , Marie-Christine Le Paslier et al.
18. Conference, Jan 2010, San Diego, United States
Communication dans un congrès hal-02754346 v1

Genetic structure and linkage disequilibrium in four Vitis species

Stephane Nicolas , Jean-Pierre Peros , Patrice P. This , Thierry Lacombe , L. Le Cunff et al.
10. International Conference on Grapevine Breeding and Genetics, Aug 2010, Geneva (N.Y.), United States
Communication dans un congrès hal-02756085 v1

Large genetic variability of maize leaf palatability to european corn borer : metabolic insights

Inoussa Sanane , Stephane Nicolas , Cyril Bauland , Frédéric Marion-Poll , Camille Noûs et al.
2023
Pré-publication, Document de travail hal-04189421 v1
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metaGE: Investigating Genotype × Environment interactions through meta-analysis

Annaïg de Walsche , Alexis Vergne , Renaud Rincent , Fabrice Roux , Stephane Nicolas et al.
2024
Pré-publication, Document de travail hal-04507780 v1
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Genetic diversity of maize landraces from the South-West of France

Yacine Diaw , Christine Tollon-Cordet , Alain Charcosset , Stephane Nicolas , Delphine Madur et al.
2020
Pré-publication, Document de travail (preprint/prepublication) hal-02965051 v1

Diversity patterns and selective sweeps in a Southeast European panel of maize inbred lines as combined with two West European panels

Vlatko Galić , Violeta Anđelković , Natalija Kravić , Nikola Grčić , Tatjana Ledenčan et al.
2021
Pré-publication, Document de travail hal-03372006 v1
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Genome-wide SNP genotyping of DNA pools identifies untapped landraces and genomic regions that could enrich the maize breeding pool

Mariangela Arca , Brigitte Gouesnard , Tristan Mary-Huard , Marie-Christine Le Paslier , Cyril Bauland et al.
2020
Pré-publication, Document de travail (preprint/prepublication) hal-02965049 v1
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Deciphering the genetic diversity of landraces with high-throughput SNP genotyping of DNA bulks: methodology and application to the maize 50k array Mariangela Arca

Mariangela Arca , Tristan Mary-Huard , Cyril Bauland , Brigitte Gouesnard , Aurélie Berard et al.
2020
Pré-publication, Document de travail (preprint/prepublication) hal-02965048 v1
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Integrating proteomics and genomics into systems genetics provides novel insights into the mechanisms of drought tolerance in maize

M. Blein , Sandra Silvia Negro , Thierry Balliau , Claude Welcker , Llorenç Cabrera Bosquet et al.
2019
Pré-publication, Document de travail (preprint/prepublication) hal-02788569 v1
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Genotyping-by-sequencing and microarrays are complementary for detecting quantitative trait loci by tagging different haplotypes in association studies

Sandra Silvia Negro , Emilie Millet , Delphine Madur , Cyril Bauland , Valerie Combes et al.
2018
Pré-publication, Document de travail (preprint/prepublication) hal-02786986 v1
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High throughput genotyping of structural variations in a complex plant genome using an original Affymetrix® Axiom® array

Clement Mabire , Duarte Jorge , Aude Darracq , Ali Pirani , Hélène Rimbert et al.
2018
Pré-publication, Document de travail (preprint/prepublication) hal-02788790 v1