Tristan Mary-Huard

Tristan Mary-Huard Senior Researcher in statistics at INRAE
107
Documents
Affiliations actuelles
  • Génétique Quantitative et Evolution - Le Moulon (Génétique Végétale) (GQE-Le Moulon)
  • Mathématiques et Informatique Appliquées (MIA Paris-Saclay)
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Présentation

Publications

Publications

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metaGE: Investigating genotype x environment interactions through GWAS meta-analysis

Annaïg de Walsche , Alexis Vergne , Renaud Rincent , Fabrice Roux , Stéphane Nicolas et al.

PLoS Genetics, 2025, 21, pp.e1011553. ⟨10.1371/journal.pgen.1011553⟩

Article dans une revue hal-04994005v1
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Large-scale composite hypothesis testing procedure for omics data analyses

Annaïg de Walsche , Franck Gauthier , Nathalie Boissot , Alain Charcosset , Tristan Mary-Huard

NAR Genomics and Bioinformatics, 2025, 7 (3), ⟨10.1093/nargab/lqaf118⟩

Article dans une revue hal-05291677v1
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Genomic prediction-aided incorporation of genetic resources into elite breeding: lessons from a collaborative multiparental design in flint maize

Dimitri Sanchez , Sarah Ben Sadoun , Tristan Mary-Huard , Cyril Bauland , Carine Palaffre et al.

TAG Theoretical and Applied Genetics, 2025, 138, pp.262. ⟨10.1007/s00122-025-05034-3⟩

Article dans une revue hal-05331884v1
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Improvement in genomic prediction of maize with prior gene ontology information depends on traits and environmental conditions

Baber Ali , Tristan Mary‐huard , Alain Charcosset , Laurence Moreau , Renaud Rincent

Plant Genome, 2025, 18 (1), ⟨10.1002/tpg2.20553⟩

Article dans une revue hal-05158192v1
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Deep learning and genomic best linear unbiased prediction integration: An approach to identify potential nonlinear genetic relationships between traits

F. Shokor , P. Croiseau , H. Gangloff , R. Saintilan , T. Tribout et al.

Journal of Dairy Science, 2025, 108 (6), pp.6174-6189. ⟨10.3168/jds.2024-26057⟩

Article dans une revue hal-05218863v1

Global genotype by environment prediction competition reveals that diverse modeling strategies can deliver satisfactory maize yield estimates

Jacob Washburn , José Ignacio Varela , Alencar Xavier , Qiuyue Chen , David Ertl et al.

Genetics, 2025, 229 (2), ⟨10.1093/genetics/iyae195⟩

Article dans une revue hal-05201508v1

A novel genome-wide association study method for detecting quantitative trait loci interacting with complex population structures in plant genetics

Kosuke Hamazaki , Hiroyoshi Iwata , Tristan Mary-Huard

Genetics, 2025, 229 (4), ⟨10.1093/genetics/iyaf038⟩

Article dans une revue hal-05307438v1
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Genetic and Phenotypic Evaluation of European Maize Landraces as a Tool for Conservation and Valorization of Agrobiodiversity

Carlotta Balconi , Agustin Galaretto , Rosa Ana Malvar , Stéphane D Nicolas , Rita Redaelli et al.

Biology, 2024, 13 (6), pp.454. ⟨10.3390/biology13060454⟩

Article dans une revue hal-04645117v1

Portability of genomic predictions trained on sparse factorial designs across two maize silage breeding cycles

Alizarine Lorenzi , Cyril Bauland , Sophie Pin , Delphine Madur , Valérie Combes et al.

TAG Theoretical and Applied Genetics, 2024, 137 (3), pp.75. ⟨10.1007/s00122-024-04566-4⟩

Article dans une revue hal-05292790v1

High-dimensional multi-omics measured in controlled conditions are useful for maize platform and field trait predictions

Baber Ali , Bertrand Huguenin-Bizot , Maxime J Laurent , François Chaumont , Laurie Maistriaux et al.

TAG Theoretical and Applied Genetics, 2024, 137 (7), pp.175. ⟨10.1007/s00122-024-04679-w⟩

Article dans une revue hal-04677733v1
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Assessing the potential of genetic resource introduction into elite germplasm: a collaborative multiparental population for flint maize

Dimitri Sanchez , Antoine Allier , Sarah Ben Sadoun , Tristan Mary-Huard , Cyril Bauland et al.

TAG Theoretical and Applied Genetics, 2024, 137 (1), pp.19. ⟨10.1007/s00122-023-04509-5⟩

Article dans une revue hal-04401428v1
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New insights towards breeding for mixed cropping of spring pea and barley to increase yield and yield stability

Benedikt Haug , Monika Messmer , Jérôme Enjalbert , Isabelle Goldringer , Timothée Flutre et al.

Field Crops Research, 2023, 297, pp.108923. ⟨10.1016/j.fcr.2023.108923⟩

Article dans une revue hal-04139254v1
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Priming therapy by targeting enhancer-initiated pathways in patient-derived pancreatic cancer cells

Nicolas A Fraunhoffer , Aura I Moreno Vega , Analía Meilerman Abuelafia , Marie Morvan , Émilie Lebarbier et al.

EBioMedicine, 2023, 92, pp.104602. ⟨10.1016/j.ebiom.2023.104602⟩

Article dans une revue hal-04100206v1
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Detecting directional and non-directional epistasis in bi-parental populations using genomic data

Simon Rio , Alain Charcosset , Laurence Moreau , Tristan Mary-Huard

Genetics, 2023, 224 (3), pp.iyad089. ⟨10.1093/genetics/iyad089⟩

Article dans une revue hal-04215609v1
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Fast and accurate joint inference of coancestry parameters for populations and/or individuals

Tristan Mary-Huard , David Balding

PLoS Genetics, 2023, 19 (1), pp.e1010054. ⟨10.1371/journal.pgen.1010054⟩

Article dans une revue hal-04215636v1
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Improving the use of plant genetic resources to sustain breeding programs’ efficiency

Dimitri Sanchez , Sarah Ben Sadoun , Tristan Mary-Huard , Antoine Allier , Laurence Moreau et al.

Proceedings of the National Academy of Sciences of the United States of America, 2023, 120 (14), pp.e2205780119. ⟨10.1073/pnas.2205780119⟩

Article dans une revue hal-04215595v1
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Identifying QTLs involved in hybrid performance and heterotic group complementarity: new GWAS models applied to factorial and admixed diallel maize hybrid panels

Aurélien Beugnot , Tristan Mary-Huard , Cyril Bauland , Valerie Combes , Delphine Madur et al.

TAG Theoretical and Applied Genetics, 2023, 136, pp.219. ⟨10.1007/s00122-023-04431-w⟩

Article dans une revue hal-04295142v1
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Genotyping of DNA pools identifies untapped landraces and genomic regions to develop next‐generation varieties

Mariangela Arca , Brigitte Gouesnard , Tristan Mary‐huard , Marie‐christine Le Paslier , Cyril Bauland et al.

Plant Biotechnology Journal, 2023, 21, pp.1123-1139. ⟨10.1111/pbi.14022⟩

Article dans une revue hal-04103846v2
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Genomic prediction for grain yield and micro-environmental sensitivity in winter wheat

Miguel Raffo , Beatriz C. D. Cuyabano , Renaud Rincent , Pernille Sarup , Laurence Moreau et al.

Frontiers in Plant Science, 2023, 13, ⟨10.3389/fpls.2022.1075077⟩

Article dans une revue hal-04127792v1
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Improving genomic predictions with inbreeding and nonadditive effects in two admixed maize hybrid populations in single and multienvironment contexts

Morgane Roth , Aurélien Beugnot , Tristan Mary-Huard , Laurence Moreau , Alain Charcosset et al.

Genetics, 2022, 220 (4), pp.1-18. ⟨10.1093/genetics/iyac018⟩

Article dans une revue hal-03659124v1
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Querying multiple sets of P -values through composed hypothesis testing

Tristan Mary-Huard , Sarmistha Das , Indranil Mukhopadhyay , Stephane S. Robin

Bioinformatics, 2022, 38 (1), pp.141-148. ⟨10.1093/bioinformatics/btab592⟩

Article dans une revue hal-03909580v1
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Efficient ReML inference in variance component mixed models using a Min-Max algorithm

Fabien Laporte , Alain Charcosset , Tristan Mary-Huard

PLoS Computational Biology, 2022, 18 (1), pp.e1009659. ⟨10.1371/journal.pcbi.1009659⟩

Article dans une revue hal-04068810v1
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Genomic prediction of hybrid performance: comparison of the efficiency of factorial and tester designs used as training sets in a multiparental connected reciprocal design for maize silage

Alizarine Lorenzi , Cyril Bauland , Tristan Mary-Huard , Sophie Pin , Carine Palaffre et al.

TAG Theoretical and Applied Genetics, 2022, 135 (9), pp.3143 - 3160. ⟨10.1007/s00122-022-04176-y⟩

Article dans une revue hal-04216367v1
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Unravelling cucumber resistance to several viruses via genome-wide association studies highlighted resistance hotspots and new QTLs

Severine Monnot , Melissa Cantet , Tristan Mary-Huard , Laurence Moreau , Rebecca Lowdon et al.

Horticulture research, 2022, 9, pp.uhac184. ⟨10.1093/hr/uhac184⟩

Article dans une revue hal-03971463v1
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Phenomic selection in wheat breeding: prediction of the genotype-by-environment interaction in multi-environment breeding trials

Pauline Robert , Ellen Goudemand , Jérôme Auzanneau , François-Xavier Oury , Bernard Rolland et al.

TAG Theoretical and Applied Genetics, 2022, 135, pp.3337-3356. ⟨10.1007/s00122-022-04170-4⟩

Article dans une revue hal-03765277v1
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Advances in breeding for mixed cropping – incomplete factorials and the producer/associate concept

Benedikt Haug , Monika M Messmer , Jérôme Enjalbert , Isabelle Goldringer , Emma Forst et al.

Frontiers in Plant Science, 2021, 11, ⟨10.3389/fpls.2020.620400⟩

Article dans une revue hal-03317725v1
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Deciphering the Genetic Diversity of Landraces With High-Throughput SNP Genotyping of DNA Bulks: Methodology and Application to the Maize 50k Array

Mariangela Arca , Tristan Mary-Huard , Brigitte Gouesnard , Aurélie Bérard , Cyril Bauland et al.

Frontiers in Plant Science, 2021, 11, ⟨10.3389/fpls.2020.568699⟩

Article dans une revue hal-03368756v1
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The INCREASE project: Intelligent Collections of food‐legume genetic resources for European agrofood systems

Elisa Bellucci , Orlando Mario Aguilar , Saleh Alseekh , Kirstin Bett , Creola Brezeanu et al.

The Plant Journal, 2021, 108 (3), pp.646-660. ⟨10.1111/tpj.15472⟩

Article dans une revue hal-03450928v1
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Error rate control for classification rules in multiclass mixture models

Tristan Mary-Huard , Vittorio Perduca , Marie-Laure Martin-Magniette , Gilles Blanchard

The international journal of biostatistics, 2021, 18 (2), pp.381-396. ⟨10.1515/ijb-2020-0105⟩

Article dans une revue hal-03357461v1
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Deciphering the Genetic Architecture of Plant Virus Resistance by GWAS, State of the Art and Potential Advances

Severine Monnot , Henri Desaint , Tristan Mary-Huard , Laurence Moreau , Valerie Schurdi-Levraud et al.

Cells, 2021, 10 (11), pp.3080. ⟨10.3390/cells10113080⟩

Article dans une revue (article de synthèse) hal-03424384v1
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Increased Susceptibility to Obesity and Glucose Intolerance in Adult Female Rats Programmed by High-Protein Diet during Gestation, But Not during Lactation

Caroline Desclée de Maredsous , Gabrielle Carlin , Annemarie Oosting , Corine Delteil , Dalila Azzout-Marniche et al.

Nutrients, 2020, 12 (2), pp.315. ⟨10.3390/nu12020315⟩

Article dans une revue hal-02973027v1
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Disentangling group specific QTL allele effects from genetic background epistasis using admixed individuals in GWAS: An application to maize flowering

Simon Rio , Tristan Mary-Huard , Laurence Moreau , Cyril Bauland , Carine Palaffre et al.

PLoS Genetics, 2020, 16 (3), pp.e1008241. ⟨10.1371/journal.pgen.1008241⟩

Article dans une revue hal-02973032v1

Accounting for Group-Specific Allele Effects and Admixture in Genomic Predictions: Theory and Experimental Evaluation in Maize

Simon Rio , Laurence Moreau , Alain Charcosset , Tristan Mary-Huard

Genetics, 2020, 216 (1), pp.27-41. ⟨10.1534/genetics.120.303278⟩

Article dans une revue hal-02973043v1

Genomic selection efficiency and a priori estimation of accuracy in a structured dent maize panel

Simon Rio , Tristan Mary-Huard , Laurence Moreau , Alain Charcosset

TAG Theoretical and Applied Genetics, 2019, 132 (1), pp.81-96. ⟨10.1007/s00122-018-3196-1⟩

Article dans une revue hal-02625890v1
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A generalized statistical framework to assess mixing ability from incomplete mixing designs using binary or higher order variety mixtures and application to wheat

Emma Forst , Jerome Enjalbert , Vincent Allard , Christophe Ambroise , Inès Krissaane et al.

Field Crops Research, 2019, 242, pp.107571. ⟨10.1016/j.fcr.2019.107571⟩

Article dans une revue hal-02618625v1
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Novel cytonuclear combinations modify Arabidopsis thaliana seed physiology and vigor

Clément Boussardon , Marie-Laure Martin-Magniette , Béatrice Godin , Abdelilah Benamar , Benjamin Vittrant et al.

Frontiers in Plant Science, 2019, 10, pp.32. ⟨10.3389/fpls.2019.00032⟩

Article dans une revue hal-02557423v1
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Subclinical endometritis in dairy cattle is associated with distinct mRNA expression patterns in blood and endometrium

Mariam Raliou , Doulaye Dembélé , Anna Düvel , Philippe Bolifraud , J. Aubert et al.

PLoS ONE, 2019, 14 (8), ⟨10.1371/journal.pone.0220244⟩

Article dans une revue hal-02264367v1
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Sequence analysis of European maize inbred line F2 provides new insights into molecular and chromosomal characteristics of presence/absence variants

Aude Darracq , Clémentine Vitte , Stephane S. Nicolas , Jorge Duarte , Jean-Philippe Pichon et al.

BMC Genomics, 2018, 19 (1), ⟨10.1186/s12864-018-4490-7⟩

Article dans une revue hal-02625253v1
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Theoretical analysis of cross-validation for estimating the risk of the k-nearest neighbor classifier

Alain Celisse , Tristan Mary-Huard

Journal of Machine Learning Research, 2018, 19, pp.1-54

Article dans une revue hal-02621332v1
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Estimating the number of block boundaries from diagonal blockwise matrices without penalization

Vincent Brault , Maud Delattre , Tristan Mary-Huard , Céline Leduc

Scandinavian Journal of Statistics, 2017, 44 (2), pp.563-580. ⟨10.1111/sjos.12266⟩

Article dans une revue hal-01533843v1

General and specific combining abilities in a maize (Zea mays L.) test-cross hybrid panel: relative importance of population structure and genetic divergence between parents

Amandine Lariepe , Laurence Moreau , J. Laborde , Cyril Bauland , S. Mezmouk et al.

TAG Theoretical and Applied Genetics, 2017, 130 (2), pp.403-417. ⟨10.1007/s00122-016-2822-z⟩

Article dans une revue hal-01481772v1
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SegCorr a statistical procedure for the detection of genomic regions of correlated expression

Eleni Ioanna Delatola , Emilie Lebarbier , Tristan Mary-Huard , François Radvanyi , Stéphane Robin et al.

BMC Bioinformatics, 2017, 18 (1), pp.333. ⟨10.1186/s12859-017-1742-5⟩

Article dans une revue inserm-02059501v1

High-Protein Exposure during Gestation or Lactation or after Weaning Has a Period-Specific Signature on Rat Pup Weight, Adiposity, Food Intake, and Glucose Homeostasis up to 6 Weeks of Age

Caroline Desclee De Maredsous , Raish Oozeer , Pierre Barbillon , Tristan Mary-Huard , Corine Delteil et al.

Journal of Nutrition, 2016, 146 (1), pp.21--29. ⟨10.3945/jn.115.216465⟩

Article dans une revue hal-01568611v1
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Characterizing individual differences in animal responses to a nutritional challenge: Toward improved robustness measures

Nicolas N.C. Friggens , Christine Duvaux-Ponter , Marie-Pierre Etienne , Tristan Mary-Huard , Philippe Schmidely

Journal of Dairy Science, 2016, 99 (4), pp.2704-2718. ⟨10.3168/jds.2015-10162⟩

Article dans une revue hal-01560635v1
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Structured regularization for conditional Gaussian graphical models

Julien Chiquet , Tristan Mary-Huard , Stephane Robin

Statistics and Computing, 2016, 27 (3), pp.1-16. ⟨10.1007/s11222-016-9654-1⟩

Article dans une revue hal-01531660v1
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Cytonuclear interactions affect adaptive traits of the annual plant Arabidopsis thaliana in the field

Fabrice Roux , Tristan Mary-Huard , Elise Barillot , Estelle Wenes , Lucy Botran et al.

Proceedings of the National Academy of Sciences of the United States of America, 2016, 113 (13), pp.3687-3682. ⟨10.1073/pnas.1520687113⟩

Article dans une revue hal-01294000v1
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GEM2Net: from gene expression modeling to -omics networks, a new CATdb module to investigate Arabidopsis thaliana genes involved in stress response

Rim Zaag , Jean-Philippe Tamby , Cecile Guichard , Zakia Tariq , Guillem Rigaill et al.

Nucleic Acids Research, 2015, 43 (Database issue), pp.D1010-D1017. ⟨10.1093/nar/gku1155⟩

Article dans une revue hal-01137554v1

Risk bounds for embedded variable selection in classification trees

Servane Gey , Tristan Mary-Huard

IEEE Transactions on Information Theory, 2014, 60 (3), pp.1688-1699. ⟨10.1109/TIT.2014.2298874⟩

Article dans une revue hal-02636643v1
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Risk Bounds for Embedded Variable Selection in Classification Trees

Servane Gey , Tristan Mary-Huard

IEEE Transactions on Information Theory, 2014, 60 (3), pp.1688-1699

Article dans une revue hal-00613041v2

Two-dimensional segmentation for analyzing Hi-C data

Celine Lévy-Leduc , Maud Delattre , T. Mary-Huard , S. Robin

Bioinformatics, 2014, 30 (17), pp.i386-i392. ⟨10.1093/bioinformatics/btu443⟩

Article dans une revue hal-04083798v1

High protein diet during gestation influences female pups response to dietary challenge in adulthood

Caroline Desclee De Maredsous , Corine Delteil , Franois Blachier , Pierre Barbillon , Tristan Mary-Huard et al.

FASEB Journal, 2014, 28 (1)

Article dans une revue hal-01568632v1

Recovering power in Association Mapping Panels with variable levels of linkage disequilibrium

Renaud Rincent , Laurence Moreau , Hervé Monod , Estelle Kuhn , Albrecht E Melchinger et al.

Genetics, 2014, 197 (1), pp.375-387. ⟨10.1534/genetics.113.159731⟩

Article dans une revue hal-02634244v1
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MultiChIPmixHMM: an R package for ChIP-chip data analysis modeling spatial dependencies and multiple replicates

Caroline Berard , Michael Seifert , Tristan Mary-Huard , Marie-Laure Magniette

BMC Bioinformatics, 2013, 14, ⟨10.1186/1471-2105-14-271⟩

Article dans une revue hal-01190745v1
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Methods to estimate effective population size using pedigree data: Examples in dog, sheep, cattle and horse

Grégoire Leroy , Tristan Mary-Huard , Etienne Verrier , Sophie Danvy , Eléonore Charvolin et al.

Genetics Selection Evolution, 2013, 45, online (january), Non paginé. ⟨10.1186/1297-9686-45-1⟩

Article dans une revue hal-01019858v1
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Variation of gene expression associated with colonisation of an anthropized environment: comparison between African and European populations of Drosophila simulans

Francois Wurmser , Tristan Mary-Huard , Jean-Jacques Daudin , Dominique Joly , Catherine Montchamp-Moreau

PLoS ONE, 2013, 8 (11), ⟨10.1371/journal.pone.0079750⟩

Article dans une revue hal-01197615v1

ExactDAS: an exact test procedure for the detection of differential alternative splicing in microarray experiments

Tristan Mary-Huard , Florence Jaffrezic , Stephane S. Robin

Statistical Applications in Genetics and Molecular Biology, 2012, 11, online (5), Non paginé. ⟨10.1515/1544-6115.1814⟩

Article dans une revue istex hal-01000045v1

Integrative epigenomic mapping defines four main chromatin states in Arabidopsis

François Roudier , Ikhlak I. Ahmed , Caroline C. Berard , Alexis A. Sarazin , Tristan Mary-Huard et al.

EMBO Journal, 2011, 30 (10), pp.1928 - 1938. ⟨10.1038/emboj.2011.103⟩

Article dans une revue hal-00999846v1

Exact Cross-Validation for k-NN in binary classification, applications to passive and active learning

Tristan Mary-Huard , Alain Celisse

Journal de la Société Française de Statistique, 2011, 152 (3), pp.83-97

Article dans une revue hal-01562197v1
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Exact Cross-Validation for kNN and applications to passive and active learning in classification

Alain A. Célisse , Tristan Mary-Huard

Journal de la Société Française de Statistique, 2011, 152 (3), pp.83-97

Article dans une revue hal-01000024v1

Population transcriptomics: insights from Drosophila simulans, Drosophila sechellia and their hybrids

Francois F. Wurmser , David D. Ogereau , Tristan Mary-Huard , Béatrice B. Loriod , Dominique D. Joly et al.

Genetica, 2011, 139 (4), pp.465-477. ⟨10.1007/s10709-011-9566-0⟩

Article dans une revue istex hal-01000026v1

Integrative epigenomic mapping defines four main chromatin states in Arabidopsis

François Roudier , Ikhlak Ahmed , Caroline Bérard , Alexis Sarazin , Tristan Mary-Huard et al.

The EMBO Journal, 2011, 30 (10), pp.1928-1938. ⟨10.1038/emboj.2011.103⟩

Article dans une revue hal-04383147v1

Tailored Aggregation for Classification

Tristan Mary-Huard , Stephane Robin

IEEE Transactions on Pattern Analysis and Machine Intelligence, 2009, 31 (11), pp.2098-2105. ⟨10.1109/TPAMI.2009.55⟩

Article dans une revue hal-01197577v1

Estimation of the conditional risk in classification: the swapping method

Jean-Jacques Daudin , Tristan Mary-Huard

Computational Statistics and Data Analysis, 2008, 52 (6), pp.3220-3232. ⟨10.1016/j.csda.2007.10.003⟩

Article dans une revue istex hal-01197609v1

ChIPmix: mixture model of regressions for two-color ChIP-chip analysis

Marie-Laure Magniette , Tristan Mary-Huard , Caroline Berard , Stephane Robin

Bioinformatics, 2008, 24 (16), pp.i181-i186. ⟨10.1093/bioinformatics/btn280⟩

Article dans une revue hal-01197653v1
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Statistical methodology for the analysis of dye-switch microarray experiments

Tristan Mary-Huard , Julie Aubert , Nadera Mansouri , Olivier Sandra , Jean-Jacques Daudin

BMC Bioinformatics, 2008, 9 (98), ⟨10.1186/1471-2105-9-98⟩

Article dans une revue hal-01197510v1

Biases induced by pooling samples in microarray experiments

Tristan Mary-Huard , Jean-Jacques Daudin , Michela Baccini , Annibale Biggeri , Avner Bar-Hen

Bioinformatics, 2007, 23 (13), pp.i313-i318. ⟨10.1093/bioinformatics/btm182⟩

Article dans une revue hal-01197570v1

A penalized criterion for variable selection in classification

Tristan Mary-Huard , Stephane Robin , Jean-Jacques Daudin

Journal of Multivariate Analysis, 2007, 98 (4), pp.695-705. ⟨10.1016/j.jmva.2006.06.003⟩

Article dans une revue hal-01197536v1
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Une introduction au critère BIC : fondements théoriques et interprétation

Tristan Mary-Huard

Journal de la Société Française de Statistique, 2006, 147 (1), pp.39-58

Article dans une revue hal-02654870v1
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Spotting effect in microarray experiments

Tristan Mary-Huard , Jean-Jacques Daudin , Stephane S. Robin , Frederique Bitton , Eric Cabannes et al.

BMC Bioinformatics, 2004, 5, pp.63. ⟨10.1186/1471-2105-5-63⟩

Article dans une revue hal-02676641v1

A Composite Hypothesis Testing Approach to Detect Pleiotropic Genomic Regions

Annaïg de Walsche , Franck Gauthier , Nathalie Boissot , Alain Charcosset , Tristan Mary-Huard

Eucarpia Biometrics in Plant Breeding 2025, Sep 2025, Edimbourg (GB), United Kingdom

Communication dans un congrès hal-05292851v1

Integrating time in GWAS pipelines to better understand genetic resistances to bacterial wilt

Adrien Belny , Richard Berthomé , Elise Albert , Laurent Grivet , Céline Labourey et al.

ENVIE, Impact of Environment on plant immunity and pathogen virulence, Nov 2024, SETE, France., Richard Berthomé; Mathilde Fagard; Valerie Schurdi-Levraud; Chloé Delmas; Frederic Domergue; Marie Foulogne-Oriol, Nov 2024, Bordeaux, France

Communication dans un congrès hal-04722296v1

Complementing genomics with platform omics help decipher the genetic architecture of in-field productivity in the presence of genotype by Environment interactions.

Baber Ali , Stephane Nicolas , Melisande Blein-Nicolas , Tristan Mary-Huard , Alain Charcosset et al.

3rd GxExM Symposium, Oct 2024, Wageningen, Netherlands

Communication dans un congrès hal-05201495v1
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Benchmarking predictive models: evaluating parametric, ensemble, and deep learning approaches for animal phenotype prediction from genotypes.

Eric Barrey , Blaise Hanczar , Julien Chiquet , Didier Boichard , Jocelyn de Goër de Herve et al.

AI and biology Symposium, EMBO EMBL, Heidelberg, Mar 2024, Heidelberg, Germany

Communication dans un congrès hal-04510253v1

Identification des bases génétiques et étude de RESIstances aux pathogènes chez la tomate résiLIENtes face aux Changements climatiquEs.

Adrien Belny , Sébastien Carrere , Jerome Gouzy , Céline Labourey , Grégori Bonnet et al.

ENVIE, Impact of Environment on plant immunity and pathogen virulence, Richard Berthomé; Mathilde Fagard; Isabelle Darboux; Thierry Langin, Nov 2023, Sète, France

Communication dans un congrès hal-04722301v1
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Genome-wide association studies on DNA pools identifies promising maize landraces and genomic regions to develop next generation varieties

Stéphane Nicolas , Antoine Roux , Sarah Ben-Sadoun , Mariangela Arca , Agustin O. Galaretto et al.

Plant Biology Europe meeting PEB 2023, Jul 2023, Marseille, France

Communication dans un congrès hal-04225361v1

A genome-wide segmentation approach for the detection of selection footprints

Tristan Mary-Huard , Guillem Rigaill

Empirism & Theory in Ecology and Evolution (ETEE 2023), Nov 2023, Saclay, France, France

Communication dans un congrès hal-05292901v1

Improving genomic predictions with inbreeding and non-additive effects in two admixed maize hybrid populations in single and multi-environment contexts

Laurence Moreau , Morgane Roth , Aurélien Beugnot , Tristan Mary-Huard , Alain Charcosset et al.

XXVth EUCARPIA Maize and Sorghum Conference, May 2022, Belgrade, Serbia

Communication dans un congrès hal-04458027v1

Adaptation of GWAS models for plant resistance to viruses: from rediscovering major genes to highlighting of new complex traits in breeding germplasm.

Severine Monnot , Laurence Moreau , Tristan Mary-Huard , Mélissa Cantet , Nathalie Boissot

XIIe Eucarpia Meeting on Cucurbit Genetics and Breeding, May 2021, Almeria, Spain. pp.1-16

Communication dans un congrès hal-03662437v1

Genome-wide hypermethylation of TEs following low temperature exposure in maize

Zeineb Achour , Johann Joets , Martine Leguilloux , Hélène Sellier , Jean-Philippe Pichon et al.

Plant and Animal Genomes XXVII, Jan 2019, San Diego (California), United States

Communication dans un congrès hal-04353481v1

An interdisciplinary approach to increase wheat within-field diversity and promote agro-ecosystem services

Jérôme Enjalbert , Vincent Allard , Christophe Ambroise , Bruno Andrieu , S. Barot et al.

1. European Conference on Crop Diversification 2019, Sep 2019, Budapest, Hungary

Communication dans un congrès hal-04481348v1

Genome-wide SNP genotyping of DNA pools identifies original landraces to enrich maize breeding genepools

Stephane Nicolas , Mariangela Arca , Tristan Mary Huard , Marie-Christine Le Paslier , Cyril Bauland et al.

Harlan International Symposium : Harlan III, Jun 2019, Montpellier, France

Communication dans un congrès hal-03368726v1

Genome-wide hypermethylation of TEs and centromeres following low temperature exposure in maize.

Zeineb Achour , Johann Joets , Martine Leguilloux , Hélène Sellier , Jean-Philippe Pichon et al.

Epiplant II, Feb 2019, Strasbourg (FRANCE), France

Communication dans un congrès hal-04478905v1

Estimation of FST and tree inference under hierarchical population structure

Tristan Mary-Huard , David J. Balding

5. Workshop Statistical Methods for Post-Genomic Data (SMPGD), 2018

Communication dans un congrès hal-02786707v1

Low temperature triggers genome-wide hypermethylation in maize, with specific targeting of TEs and centromeres

Zeineb Achour , Johann Joets , Martine Leguilloux , Hélène Sellier , Jean-Philippe Pichon et al.

Réunion annuelle du GDR MobiLET, Dec 2018, Paris, France

Communication dans un congrès hal-04478910v1

Genome-wide SNP genotyping of DNA pools identifies original landraces to enrich maize breeding genepools

Stephane S. Nicolas , Mariangela Arca , Tristan Mary-Huard , Marie-Christine Le Paslier , Cyril Bauland et al.

4. International Symposium on Genomics of Plant Genetic Resources (GPGR4), Sep 2017, Giessen, Germany

Communication dans un congrès hal-02785295v1

DNA pooling for evaluating originality of the landraces

Stephane S. Nicolas , Mariangela Arca , Tristan Mary-Huard , Brigitte Gouesnard , Marie-Christine Le Paslier et al.

1. German-French Maize Breeders School, May 2017, Hohenheim, Germany

Communication dans un congrès hal-02786301v1

A new algorithm for GWAS panel optimization, applications in plant genetics

Tristan Mary-Huard , Renaud Rincent , Alain Charcosset , Laurence Moreau

XXVIII. International Biometric Conference (IBC 2016), Dec 2017, Victoria, Canada

Communication dans un congrès hal-02739985v1

Diagonal blockwise matrix segmentation in computational biology

Tristan Mary-Huard , Stephane Robin , Celine Levy Leduc , Maud Delattre , Vincent Brault et al.

IFCAM Workshop, 2016, Bangalore, India

Communication dans un congrès hal-02795763v1

A new and high-throughput DNA pooling method based on 50K illumina maize array to unravel genetic diversity within maize landraces germplasm and identify original genetic ressources for prebreeding

Mariangela Arca , Tristan Mary-Huard , Brigitte Gouesnard , Marie-Christine Le Paslier , Cyril Bauland et al.

23. Eucarpia Maize and Sorghum conference on Genomics and Phenomics for Model-Based Maize and Sorghum Breeding, Agence Nationale de la Recherche (ANR). FRA., Jun 2015, Montpellier, France

Communication dans un congrès hal-02799117v1

Effect of structuration and relatedness on power in Genome Wide Association Studies

Renaud Rincent , Laurence Moreau , Tristan Mary-Huard , Alain Charcosset

23. Eucarpia Maize and Sorghum conference on Genomics and Phenomics for Model-Based Maize and Sorghum Breeding, Jun 2015, Montpellier, France

Communication dans un congrès hal-02795514v1
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Relatedness distribution estimation between individuals in multi-population panels

Fabien Laporte , Alain Charcosset , Tristan Mary-Huard

43rd European Mathematical Genetics Meeting (EMGM), Apr 2015, Brest, France. pp.1

Communication dans un congrès hal-01197652v1

Les signatures isotopiques des dérégulations du métabolisme protéino-énergétique lors du développement d'un syndrome métabolique chez le rat

Nathalie Poupin , Jean-François Huneau , François Mariotti , Dominique D. Hermier , Tristan Mary-Huard et al.

1er séminaire Abondances Isotopiques Naturelles en Nutrition et Santé, Jan 2014, Paris, France

Communication dans un congrès hal-01598850v1
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Two-dimensional segmentation for analyzing HiC data

Celine Levy Leduc , Maud Delattre , Tristan Mary-Huard , Stephane Robin

ECCB 2014: The 13th European Conference on Computational Biology, Sep 2014, Strasbourg, France. pp.386-392, ⟨10.1093/bioinformatics/btu443⟩

Communication dans un congrès hal-01148580v1

P306: Un régime hyperprotéique pendant la gestation est un facteur de sensibilité de la progéniture femelle à la composition du régime après le sevrage chez le rat

C. Desclée Demaredsous , C. Delteil , Blachier F. , P. Barbillon , T. Mary-Huard et al.

12es Journées Francophones de Nutrition, JFN 2014, Dec 2014, Bruxelles, Belgique. pp.231

Communication dans un congrès hal-01568784v1

d15N and d13C values in body pools are biomarkers of the protein-energy dysregulations of the metabolic syndrome onse

Nathalie Poupin , J.F. Huneau , Tristan Mary-Huard , J.P. Godin , D. Hermier et al.

GEOMED 1st workshop on biomedical application of geochemistry, Aug 2013, Gargonza, Italy

Communication dans un congrès hal-01562202v1

Inbreeding effects on litter size and longevity in dogs

G. Leroy , B. Hedan , Xavier X Rognon , Florence Phocas , Etienne E. Verrier et al.

64th Annual Meeting European Association for Animal Production (EAAP), Aug 2013, Nantes France

Communication dans un congrès hal-01562186v1

Les abondances isotopiques naturelles signent l’initiation nutritionnelle du syndrome métabolique.

Nathalie Poupin , François Mariotti , Jean-François Huneau , Tristan Mary-Huard , Jean-Philippe Godin et al.

Journées Francophones de Nutrition, Dec 2012, Lyon, France

Communication dans un congrès hal-01592265v1

ExactDAS: An exact test procedure for the detection of differential alternative splicing

Tristan Mary-Huard , Florence Jaffrezic , Stéphane Robin

4th International Conference on Bioinformatics and Computational Biology (BICoB), Mar 2012, Las Vegas, United States

Communication dans un congrès hal-01587037v1
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Embedded Variable Selection in Classification Trees

Servane Gey , Tristan Mary-Huard

GfKl 2011 : Joint Conference of the German Classification Society (GfKl) and the German Association for Pattern Recognition (DAG), Aug 2011, Francfort, Germany. n.p

Communication dans un congrès hal-01019767v1

Statistical methodology for the analysis of multi-sample ChIP-chip experiments

Tristan Mary-Huard , Marie-Laure Martin-Magniette , Caroline Berard , Stephane Robin

25. International Biometric Conference, Dec 2010, Florianopolis, Brazil. 1 p

Communication dans un congrès hal-01197553v1
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A clustering method for ordered variables to detect up-correlated genomic regions

Tristan Mary-Huard

IWSM 2009 : 24. International Workshop on Statistical Modelling, Jul 2009, Ithaca, United States. n.p

Communication dans un congrès hal-01197530v1
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A statistical approach to detect chromosomal domains of gene expression

Tristan Mary-Huard , Stephane Robin

International Federation of Classification Societies 2009 Conference, Mar 2009, Dresde, Germany. 14 p

Communication dans un congrès hal-01197555v1
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Wrapper aggregation for classification

Tristan Mary-Huard

ASMDA 2009 : 13. International Conference, Jun 2009, Vilnius, Lithuania. pp.47

Communication dans un congrès hal-01197558v1
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ChIPmix: Mixture model of regressions for two-color ChIP-chip analysis

Tristan Mary-Huard , Marie-Laure Martin-Magniette , Caroline Berard , Stephane Robin

ECCB'08: 7. European Conference on Computational Biology, Sep 2008, Calgari, Italy. 19 p

Communication dans un congrès hal-01197548v1
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Statistical methodology for the analysis of dye-switch microarray experiments

Tristan Mary-Huard , Julie Aubert , Nadera Mansouri , Olivier Sandra , Jean-Jacques Daudin

24. International Biometric Conference, Jul 2008, Dublin, Ireland. 17 p

Communication dans un congrès hal-01197571v1

Compression pour la classification supervisée

Tristan Mary-Huard , Stephane S. Robin

Journées MAS: Modèles Spatiaux, Sep 2006, Lille, France. n.p

Communication dans un congrès hal-02816369v1