Tristan Mary-Huard

107
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Publications

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metaGE: Investigating genotype x environment interactions through GWAS meta-analysis

Annaïg de Walsche , Alexis Vergne , Renaud Rincent , Fabrice Roux , Stéphane Nicolas et al.
PLoS Genetics, 2025, 21, pp.e1011553. ⟨10.1371/journal.pgen.1011553⟩
Article dans une revue hal-04994005 v1
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Genetic and Phenotypic Evaluation of European Maize Landraces as a Tool for Conservation and Valorization of Agrobiodiversity

Carlotta Balconi , Agustin Galaretto , Rosa Ana Malvar , Stéphane D Nicolas , Rita Redaelli et al.
Biology, 2024, 13 (6), pp.454. ⟨10.3390/biology13060454⟩
Article dans une revue hal-04645117 v1

High-dimensional multi-omics measured in controlled conditions are useful for maize platform and field trait predictions

Baber Ali , Bertrand Huguenin-Bizot , Maxime J Laurent , François Chaumont , Laurie Maistriaux et al.
TAG Theoretical and Applied Genetics, 2024, 137 (7), pp.175. ⟨10.1007/s00122-024-04679-w⟩
Article dans une revue hal-04677733 v1
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Assessing the potential of genetic resource introduction into elite germplasm: a collaborative multiparental population for flint maize

Dimitri Sanchez , Antoine Allier , Sarah Ben Sadoun , Tristan Mary-Huard , Cyril Bauland et al.
TAG Theoretical and Applied Genetics, 2024, 137 (1), pp.19. ⟨10.1007/s00122-023-04509-5⟩
Article dans une revue hal-04401428 v1
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New insights towards breeding for mixed cropping of spring pea and barley to increase yield and yield stability

Benedikt Haug , Monika Messmer , Jérôme Enjalbert , Isabelle Goldringer , Timothée Flutre et al.
Field Crops Research, 2023, 297, pp.108923. ⟨10.1016/j.fcr.2023.108923⟩
Article dans une revue hal-04139254 v1
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Identifying QTLs involved in hybrid performance and heterotic group complementarity: new GWAS models applied to factorial and admixed diallel maize hybrid panels

Aurélien Beugnot , Tristan Mary-Huard , Cyril Bauland , Valerie Combes , Delphine Madur et al.
TAG Theoretical and Applied Genetics, 2023, 136, pp.219. ⟨10.1007/s00122-023-04431-w⟩
Article dans une revue hal-04295142 v1
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Genotyping of DNA pools identifies untapped landraces and genomic regions to develop next‐generation varieties

Mariangela Arca , Brigitte Gouesnard , Tristan Mary‐huard , Marie‐christine Le Paslier , Cyril Bauland et al.
Plant Biotechnology Journal, 2023, 21, pp.1123-1139. ⟨10.1111/pbi.14022⟩
Article dans une revue hal-04103846 v2
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Improving the use of plant genetic resources to sustain breeding programs’ efficiency

Dimitri Sanchez , Sarah Ben Sadoun , Tristan Mary-Huard , Antoine Allier , Laurence Moreau et al.
Proceedings of the National Academy of Sciences of the United States of America, 2023, 120 (14), pp.e2205780119. ⟨10.1073/pnas.2205780119⟩
Article dans une revue hal-04215595 v1
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Fast and accurate joint inference of coancestry parameters for populations and/or individuals

Tristan Mary-Huard , David Balding
PLoS Genetics, 2023, 19 (1), pp.e1010054. ⟨10.1371/journal.pgen.1010054⟩
Article dans une revue hal-04215636 v1
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Priming therapy by targeting enhancer-initiated pathways in patient-derived pancreatic cancer cells

Nicolas A Fraunhoffer , Aura I Moreno Vega , Analía Meilerman Abuelafia , Marie Morvan , Emilie Lebarbier et al.
EBioMedicine, 2023, 92, pp.104602. ⟨10.1016/j.ebiom.2023.104602⟩
Article dans une revue hal-04100206 v1
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Detecting directional and non-directional epistasis in bi-parental populations using genomic data

Simon Rio , Alain Charcosset , Laurence Moreau , Tristan Mary-Huard
Genetics, 2023, 224 (3), pp.iyad089. ⟨10.1093/genetics/iyad089⟩
Article dans une revue hal-04215609 v1
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Genomic prediction for grain yield and micro-environmental sensitivity in winter wheat

Miguel Raffo , Beatriz C. D. Cuyabano , Renaud Rincent , Pernille Sarup , Laurence Moreau et al.
Frontiers in Plant Science, 2023, 13, ⟨10.3389/fpls.2022.1075077⟩
Article dans une revue hal-04127792 v1
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Improving genomic predictions with inbreeding and nonadditive effects in two admixed maize hybrid populations in single and multienvironment contexts

Morgane Roth , Aurélien Beugnot , Tristan Mary-Huard , Laurence Moreau , Alain Charcosset et al.
Genetics, 2022, 220 (4), pp.1-18. ⟨10.1093/genetics/iyac018⟩
Article dans une revue hal-03659124 v1
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Efficient ReML inference in variance component mixed models using a Min-Max algorithm

Fabien Laporte , Alain Charcosset , Tristan Mary-Huard
PLoS Computational Biology, 2022, 18 (1), pp.e1009659. ⟨10.1371/journal.pcbi.1009659⟩
Article dans une revue hal-04068810 v1
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Querying multiple sets of P -values through composed hypothesis testing

Tristan Mary-Huard , Sarmistha Das , Indranil Mukhopadhyay , Stephane S. Robin
Bioinformatics, 2022, 38 (1), pp.141-148. ⟨10.1093/bioinformatics/btab592⟩
Article dans une revue hal-03909580 v1
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Genomic prediction of hybrid performance: comparison of the efficiency of factorial and tester designs used as training sets in a multiparental connected reciprocal design for maize silage

Alizarine Lorenzi , Cyril Bauland , Tristan Mary-Huard , Sophie Pin , Carine Palaffre et al.
TAG Theoretical and Applied Genetics, 2022, 135 (9), pp.3143 - 3160. ⟨10.1007/s00122-022-04176-y⟩
Article dans une revue hal-04216367 v1
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Unravelling cucumber resistance to several viruses via genome-wide association studies highlighted resistance hotspots and new QTLs

Severine Monnot , Melissa Cantet , Tristan Mary-Huard , Laurence Moreau , Rebecca Lowdon et al.
Horticulture research, 2022, 9, pp.uhac184. ⟨10.1093/hr/uhac184⟩
Article dans une revue hal-03971463 v1
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Phenomic selection in wheat breeding: prediction of the genotype-by-environment interaction in multi-environment breeding trials

Pauline Robert , Ellen Goudemand , Jérôme Auzanneau , François-Xavier Oury , Bernard Rolland et al.
TAG Theoretical and Applied Genetics, 2022, 135, pp.3337-3356. ⟨10.1007/s00122-022-04170-4⟩
Article dans une revue hal-03765277 v1
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Advances in breeding for mixed cropping – incomplete factorials and the producer/associate concept

Benedikt Haug , Monika M Messmer , Jérôme Enjalbert , Isabelle Goldringer , Emma Forst et al.
Frontiers in Plant Science, 2021, 11, ⟨10.3389/fpls.2020.620400⟩
Article dans une revue hal-03317725 v1
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Deciphering the Genetic Diversity of Landraces With High-Throughput SNP Genotyping of DNA Bulks: Methodology and Application to the Maize 50k Array

Mariangela Arca , Tristan Mary-Huard , Brigitte Gouesnard , Aurélie Bérard , Cyril Bauland et al.
Frontiers in Plant Science, 2021, 11, ⟨10.3389/fpls.2020.568699⟩
Article dans une revue hal-03368756 v1
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The INCREASE project: Intelligent Collections of food‐legume genetic resources for European agrofood systems

Elisa Bellucci , Orlando Mario Aguilar , Saleh Alseekh , Kirstin Bett , Creola Brezeanu et al.
The Plant Journal, 2021, 108 (3), pp.646-660. ⟨10.1111/tpj.15472⟩
Article dans une revue hal-03450928 v1
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Error rate control for classification rules in multiclass mixture models

Tristan Mary-Huard , Vittorio Perduca , Marie-Laure Martin-Magniette , Gilles Blanchard
The international journal of biostatistics, 2021, 18 (2), pp.381-396. ⟨10.1515/ijb-2020-0105⟩
Article dans une revue hal-03357461 v1
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Deciphering the Genetic Architecture of Plant Virus Resistance by GWAS, State of the Art and Potential Advances

Severine Monnot , Henri Desaint , Tristan Mary-Huard , Laurence Moreau , Valerie Schurdi-Levraud et al.
Cells, 2021, 10 (11), pp.3080. ⟨10.3390/cells10113080⟩
Article dans une revue (article de synthèse) hal-03424384 v1
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Increased Susceptibility to Obesity and Glucose Intolerance in Adult Female Rats Programmed by High-Protein Diet during Gestation, But Not during Lactation

Caroline Desclée de Maredsous , Gabrielle Carlin , Annemarie Oosting , Corine Delteil , Dalila Azzout-Marniche et al.
Nutrients, 2020, 12 (2), pp.315. ⟨10.3390/nu12020315⟩
Article dans une revue hal-02973027 v1

Accounting for Group-Specific Allele Effects and Admixture in Genomic Predictions: Theory and Experimental Evaluation in Maize

Simon Rio , Laurence Moreau , Alain Charcosset , Tristan Mary-Huard
Genetics, 2020, 216 (1), pp.27-41. ⟨10.1534/genetics.120.303278⟩
Article dans une revue hal-02973043 v1
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Disentangling group specific QTL allele effects from genetic background epistasis using admixed individuals in GWAS: An application to maize flowering

Simon Rio , Tristan Mary-Huard , Laurence Moreau , Cyril Bauland , Carine Palaffre et al.
PLoS Genetics, 2020, 16 (3), pp.e1008241. ⟨10.1371/journal.pgen.1008241⟩
Article dans une revue hal-02973032 v1
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A generalized statistical framework to assess mixing ability from incomplete mixing designs using binary or higher order variety mixtures and application to wheat

Emma Forst , Jerome Enjalbert , Vincent Allard , Christophe Ambroise , Inès Krissaane et al.
Field Crops Research, 2019, 242, pp.107571. ⟨10.1016/j.fcr.2019.107571⟩
Article dans une revue hal-02618625 v1

Genomic selection efficiency and a priori estimation of accuracy in a structured dent maize panel

Simon Rio , Tristan Mary-Huard , Laurence Moreau , Alain Charcosset
TAG Theoretical and Applied Genetics, 2019, 132 (1), pp.81-96. ⟨10.1007/s00122-018-3196-1⟩
Article dans une revue hal-02625890 v1
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Novel cytonuclear combinations modify Arabidopsis thaliana seed physiology and vigor

Clément Boussardon , Marie-Laure Martin-Magniette , Béatrice Godin , Abdelilah Benamar , Benjamin Vittrant et al.
Frontiers in Plant Science, 2019, 10, pp.32. ⟨10.3389/fpls.2019.00032⟩
Article dans une revue hal-02557423 v1
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Subclinical endometritis in dairy cattle is associated with distinct mRNA expression patterns in blood and endometrium

Mariam Raliou , Doulaye Dembélé , Anna Düvel , Philippe Bolifraud , J. Aubert et al.
PLoS ONE, 2019, 14 (8), ⟨10.1371/journal.pone.0220244⟩
Article dans une revue hal-02264367 v1
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Sequence analysis of European maize inbred line F2 provides new insights into molecular and chromosomal characteristics of presence/absence variants

Aude Darracq , Clémentine Vitte , Stephane S. Nicolas , Jorge Duarte , Jean-Philippe Pichon et al.
BMC Genomics, 2018, 19 (1), ⟨10.1186/s12864-018-4490-7⟩
Article dans une revue hal-02625253 v1
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Theoretical analysis of cross-validation for estimating the risk of the k-nearest neighbor classifier

Alain Celisse , Tristan Mary-Huard
Journal of Machine Learning Research, 2018, 19, pp.1-54
Article dans une revue hal-02621332 v1
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Estimating the number of block boundaries from diagonal blockwise matrices without penalization

Vincent Brault , Maud Delattre , Tristan Mary-Huard , Céline Leduc
Scandinavian Journal of Statistics, 2017, 44 (2), pp.563-580. ⟨10.1111/sjos.12266⟩
Article dans une revue hal-01533843 v1

General and specific combining abilities in a maize (Zea mays L.) test-cross hybrid panel: relative importance of population structure and genetic divergence between parents

Amandine Lariepe , Laurence Moreau , J. Laborde , Cyril Bauland , S. Mezmouk et al.
TAG Theoretical and Applied Genetics, 2017, 130 (2), pp.403-417. ⟨10.1007/s00122-016-2822-z⟩
Article dans une revue hal-01481772 v1
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SegCorr a statistical procedure for the detection of genomic regions of correlated expression

Eleni Ioanna Delatola , Emilie Lebarbier , Tristan Mary-Huard , François Radvanyi , Stéphane Robin et al.
BMC Bioinformatics, 2017, 18 (1), pp.333. ⟨10.1186/s12859-017-1742-5⟩
Article dans une revue inserm-02059501 v1

High-Protein Exposure during Gestation or Lactation or after Weaning Has a Period-Specific Signature on Rat Pup Weight, Adiposity, Food Intake, and Glucose Homeostasis up to 6 Weeks of Age

Caroline Desclee De Maredsous , Raish Oozeer , Pierre Barbillon , Tristan Mary-Huard , Corine Delteil et al.
Journal of Nutrition, 2016, 146 (1), pp.21--29. ⟨10.3945/jn.115.216465⟩
Article dans une revue hal-01568611 v1
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Characterizing individual differences in animal responses to a nutritional challenge: Toward improved robustness measures

Nicolas N.C. Friggens , Christine Duvaux-Ponter , Marie-Pierre Etienne , Tristan Mary-Huard , Philippe Schmidely
Journal of Dairy Science, 2016, 99 (4), pp.2704-2718. ⟨10.3168/jds.2015-10162⟩
Article dans une revue hal-01560635 v1
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Structured regularization for conditional Gaussian graphical models

Julien Chiquet , Tristan Mary-Huard , Stephane Robin
Statistics and Computing, 2016, 27 (3), pp.1-16. ⟨10.1007/s11222-016-9654-1⟩
Article dans une revue hal-01531660 v1
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Cytonuclear interactions affect adaptive traits of the annual plant Arabidopsis thaliana in the field

Fabrice Roux , Tristan Mary-Huard , Elise Barillot , Estelle Wenes , Lucy Botran et al.
Proceedings of the National Academy of Sciences of the United States of America, 2016, 113 (13), pp.3687-3682. ⟨10.1073/pnas.1520687113⟩
Article dans une revue hal-01294000 v1
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GEM2Net: from gene expression modeling to -omics networks, a new CATdb module to investigate Arabidopsis thaliana genes involved in stress response

Rim Zaag , Jean-Philippe Tamby , Cecile Guichard , Zakia Tariq , Guillem Rigaill et al.
Nucleic Acids Research, 2015, 43 (Database issue), pp.D1010-D1017. ⟨10.1093/nar/gku1155⟩
Article dans une revue hal-01137554 v1

Risk bounds for embedded variable selection in classification trees

Servane Gey , Tristan Mary-Huard
IEEE Transactions on Information Theory, 2014, 60 (3), pp.1688-1699. ⟨10.1109/TIT.2014.2298874⟩
Article dans une revue hal-02636643 v1
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Risk Bounds for Embedded Variable Selection in Classification Trees

Servane Gey , Tristan Mary-Huard
IEEE Transactions on Information Theory, 2014, 60 (3), pp.1688-1699
Article dans une revue hal-00613041 v2

Two-dimensional segmentation for analyzing Hi-C data

Celine Lévy-Leduc , Maud Delattre , T. Mary-Huard , S. Robin
Bioinformatics, 2014, 30 (17), pp.i386-i392. ⟨10.1093/bioinformatics/btu443⟩
Article dans une revue hal-04083798 v1

High protein diet during gestation influences female pups response to dietary challenge in adulthood

Caroline Desclee De Maredsous , Corine Delteil , Franois Blachier , Pierre Barbillon , Tristan Mary-Huard et al.
FASEB Journal, 2014, 28 (1)
Article dans une revue hal-01568632 v1

Recovering power in Association Mapping Panels with variable levels of linkage disequilibrium

Renaud Rincent , Laurence Moreau , Hervé Monod , Estelle Kuhn , Albrecht E Melchinger et al.
Genetics, 2014, 197 (1), pp.375-387. ⟨10.1534/genetics.113.159731⟩
Article dans une revue hal-02634244 v1
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MultiChIPmixHMM: an R package for ChIP-chip data analysis modeling spatial dependencies and multiple replicates

Caroline Berard , Michael Seifert , Tristan Mary-Huard , Marie-Laure Magniette
BMC Bioinformatics, 2013, 14, ⟨10.1186/1471-2105-14-271⟩
Article dans une revue hal-01190745 v1
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Methods to estimate effective population size using pedigree data: Examples in dog, sheep, cattle and horse

Grégoire Leroy , Tristan Mary-Huard , Etienne Verrier , Sophie Danvy , Eléonore Charvolin et al.
Genetics Selection Evolution, 2013, 45, online (january), Non paginé. ⟨10.1186/1297-9686-45-1⟩
Article dans une revue hal-01019858 v1
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Variation of gene expression associated with colonisation of an anthropized environment: comparison between African and European populations of Drosophila simulans

Francois Wurmser , Tristan Mary-Huard , Jean-Jacques Daudin , Dominique Joly , Catherine Montchamp-Moreau
PLoS ONE, 2013, 8 (11), ⟨10.1371/journal.pone.0079750⟩
Article dans une revue hal-01197615 v1

ExactDAS: an exact test procedure for the detection of differential alternative splicing in microarray experiments

Tristan Mary-Huard , Florence Jaffrezic , Stephane S. Robin
Statistical Applications in Genetics and Molecular Biology, 2012, 11, online (5), Non paginé. ⟨10.1515/1544-6115.1814⟩
Article dans une revue istex hal-01000045 v1

Exact Cross-Validation for k-NN in binary classification, applications to passive and active learning

Tristan Mary-Huard , Alain Celisse
Journal de la Société Française de Statistique, 2011, 152 (3), pp.83-97
Article dans une revue hal-01562197 v1

Integrative epigenomic mapping defines four main chromatin states in Arabidopsis

François Roudier , Ikhlak I. Ahmed , Caroline C. Berard , Alexis A. Sarazin , Tristan Mary-Huard et al.
EMBO Journal, 2011, 30 (10), pp.1928 - 1938. ⟨10.1038/emboj.2011.103⟩
Article dans une revue hal-00999846 v1

Population transcriptomics: insights from Drosophila simulans, Drosophila sechellia and their hybrids

Francois F. Wurmser , David D. Ogereau , Tristan Mary-Huard , Béatrice B. Loriod , Dominique D. Joly et al.
Genetica, 2011, 139 (4), pp.465-477. ⟨10.1007/s10709-011-9566-0⟩
Article dans une revue istex hal-01000026 v1
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Exact Cross-Validation for kNN and applications to passive and active learning in classification

Alain A. Célisse , Tristan Mary-Huard
Journal de la Société Française de Statistique, 2011, 152 (3), pp.83-97
Article dans une revue hal-01000024 v1

Integrative epigenomic mapping defines four main chromatin states in Arabidopsis

François Roudier , Ikhlak Ahmed , Caroline Bérard , Alexis Sarazin , Tristan Mary-Huard et al.
The EMBO Journal, 2011, 30 (10), pp.1928-1938. ⟨10.1038/emboj.2011.103⟩
Article dans une revue hal-04383147 v1

Tailored Aggregation for Classification

Tristan Mary-Huard , Stephane Robin
IEEE Transactions on Pattern Analysis and Machine Intelligence, 2009, 31 (11), pp.2098-2105. ⟨10.1109/TPAMI.2009.55⟩
Article dans une revue hal-01197577 v1

Estimation of the conditional risk in classification: the swapping method

Jean-Jacques Daudin , Tristan Mary-Huard
Computational Statistics and Data Analysis, 2008, 52 (6), pp.3220-3232. ⟨10.1016/j.csda.2007.10.003⟩
Article dans une revue istex hal-01197609 v1

ChIPmix: mixture model of regressions for two-color ChIP-chip analysis

Marie-Laure Magniette , Tristan Mary-Huard , Caroline Berard , Stephane Robin
Bioinformatics, 2008, 24 (16), pp.i181-i186. ⟨10.1093/bioinformatics/btn280⟩
Article dans une revue hal-01197653 v1
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Statistical methodology for the analysis of dye-switch microarray experiments

Tristan Mary-Huard , Julie Aubert , Nadera Mansouri , Olivier Sandra , Jean-Jacques Daudin
BMC Bioinformatics, 2008, 9 (98), ⟨10.1186/1471-2105-9-98⟩
Article dans une revue hal-01197510 v1

Biases induced by pooling samples in microarray experiments

Tristan Mary-Huard , Jean-Jacques Daudin , Michela Baccini , Annibale Biggeri , Avner Bar-Hen
Bioinformatics, 2007, 23 (13), pp.i313-i318. ⟨10.1093/bioinformatics/btm182⟩
Article dans une revue hal-01197570 v1

A penalized criterion for variable selection in classification

Tristan Mary-Huard , Stephane Robin , Jean-Jacques Daudin
Journal of Multivariate Analysis, 2007, 98 (4), pp.695-705. ⟨10.1016/j.jmva.2006.06.003⟩
Article dans une revue hal-01197536 v1
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Une introduction au critère BIC : fondements théoriques et interprétation

Tristan Mary-Huard
Journal de la Société Française de Statistique, 2006, 147 (1), pp.39-58
Article dans une revue hal-02654870 v1
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Spotting effect in microarray experiments

Tristan Mary-Huard , Jean-Jacques J.-J. Daudin , Stephane S. Robin , Frederique Bitton , Eric Cabannes et al.
BMC Bioinformatics, 2004, 5, pp.63. ⟨10.1186/1471-2105-5-63⟩
Article dans une revue hal-02676641 v1

Integrating time in GWAS pipelines to better understand genetic resistances to bacterial wilt

Adrien Belny , Richard Berthomé , Elise Albert , Laurent Grivet , Céline Labourey et al.
ENVIE, Impact of Environment on plant immunity and pathogen virulence, Nov 2024, SETE, France., Richard Berthomé; Mathilde Fagard; Valerie Schurdi-Levraud; Chloé Delmas; Frederic Domergue; Marie Foulogne-Oriol, Nov 2024, Bordeaux, France
Communication dans un congrès hal-04722296 v1
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Benchmarking predictive models: evaluating parametric, ensemble, and deep learning approaches for animal phenotype prediction from genotypes.

Eric Barrey , Blaise Hanczar , Julien Chiquet , Didier Boichard , Jocelyn de Goër de Herve et al.
AI and biology Symposium, EMBO EMBL, Heidelberg, Mar 2024, HEIDELBERG, Germany
Communication dans un congrès hal-04510253 v1

Identification des bases génétiques et étude de RESIstances aux pathogènes chez la tomate résiLIENtes face aux Changements climatiquEs.

Adrien Belny , Sébastien Carrere , Jerome Gouzy , Céline Labourey , Grégori Bonnet et al.
ENVIE, Impact of Environment on plant immunity and pathogen virulence, Richard Berthomé; Mathilde Fagard; Isabelle Darboux; Thierry Langin, Nov 2023, SETE, France
Communication dans un congrès hal-04722301 v1
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Genome-wide association studies on DNA pools identifies promising maize landraces and genomic regions to develop next generation varieties

Stéphane Nicolas , Antoine Roux , Sarah Ben-Sadoun , Mariangela Arca , Agustin O. Galaretto et al.
Plant Biology Europe 2023, Jul 2023, Marseille, France
Communication dans un congrès hal-04225361 v1

Improving genomic predictions with inbreeding and non-additive effects in two admixed maize hybrid populations in single and multi-environment contexts

Laurence Moreau , Morgane Roth , Aurélien Beugnot , Tristan Mary-Huard , Alain Charcosset et al.
XXVth EUCARPIA Maize and Sorghum Conference, May 2022, Belgrade, Serbia
Communication dans un congrès hal-04458027 v1

Adaptation of GWAS models for plant resistance to viruses: from rediscovering major genes to highlighting of new complex traits in breeding germplasm.

Severine Monnot , Laurence Moreau , Tristan Mary-Huard , Mélissa Cantet , Nathalie Boissot
XIIe Eucarpia Meeting on Cucurbit Genetics and Breeding, May 2021, Almeria, Spain. pp.1-16
Communication dans un congrès hal-03662437 v1

An interdisciplinary approach to increase wheat within-field diversity and promote agro-ecosystem services

Jérôme Enjalbert , Vincent Allard , Christophe Ambroise , Bruno Andrieu , S. Barot et al.
European Conference on Crop Diversification, Sep 2019, Budapest, Hungary
Communication dans un congrès hal-04481348 v1

Genome-wide hypermethylation of TEs following low temperature exposure in maize

Zeineb Achour , Johann Joets , Martine Leguilloux , Hélène Sellier , Jean-Philippe Pichon et al.
Plant and Animal Genomes XXVII, Jan 2019, San Diego (California), United States
Communication dans un congrès hal-04353481 v1

Genome-wide SNP genotyping of DNA pools identifies original landraces to enrich maize breeding genepools

Stephane Nicolas , Mariangela Arca , Tristan Mary Huard , Marie-Christine Le Paslier , Cyril Bauland et al.
Harlan International Symposium : Harlan III, Jun 2019, Montpellier, France
Communication dans un congrès hal-03368726 v1

Genome-wide hypermethylation of TEs and centromeres following low temperature exposure in maize.

Zeineb Achour , Johann Joets , Martine Leguilloux , Hélène Sellier , Jean-Philippe Pichon et al.
Epiplant II, Feb 2019, Strasbourg (FRANCE), France
Communication dans un congrès hal-04478905 v1

Estimation of FST and tree inference under hierarchical population structure

Tristan Mary-Huard , David J. Balding
5. Workshop Statistical Methods for Post-Genomic Data (SMPGD), 2018
Communication dans un congrès hal-02786707 v1

Low temperature triggers genome-wide hypermethylation in maize, with specific targeting of TEs and centromeres

Zeineb Achour , Johann Joets , Martine Leguilloux , Hélène Sellier , Jean-Philippe Pichon et al.
Réunion annuelle du GDR MobiLET, Dec 2018, Paris, France
Communication dans un congrès hal-04478910 v1

Genome-wide SNP genotyping of DNA pools identifies original landraces to enrich maize breeding genepools

Stephane S. Nicolas , Mariangela Arca , Tristan Mary-Huard , Marie-Christine Le Paslier , Cyril Bauland et al.
4. International Symposium on Genomics of Plant Genetic Resources (GPGR4), Sep 2017, Giessen, Germany
Communication dans un congrès hal-02785295 v1

DNA pooling for evaluating originality of the landraces

Stephane S. Nicolas , Mariangela Arca , Tristan Mary-Huard , Brigitte Gouesnard , Marie-Christine Le Paslier et al.
1. German-French Maize Breeders School, May 2017, Hohenheim, Germany
Communication dans un congrès hal-02786301 v1

A new algorithm for GWAS panel optimization, applications in plant genetics

Tristan Mary-Huard , Renaud Rincent , Alain Charcosset , Laurence Moreau
XXVIII. International Biometric Conference (IBC 2016), Dec 2017, Victoria, Canada
Communication dans un congrès hal-02739985 v1

Diagonal blockwise matrix segmentation in computational biology

Tristan Mary-Huard , Stephane Robin , Celine Levy Leduc , Maud Delattre , Vincent Brault et al.
IFCAM Workshop, 2016, Bangalore, India
Communication dans un congrès hal-02795763 v1

A new and high-throughput DNA pooling method based on 50K illumina maize array to unravel genetic diversity within maize landraces germplasm and identify original genetic ressources for prebreeding

Mariangela Arca , Tristan Mary-Huard , Brigitte Gouesnard , Marie-Christine Le Paslier , Cyril Bauland et al.
23. Eucarpia Maize and Sorghum conference on Genomics and Phenomics for Model-Based Maize and Sorghum Breeding, Agence Nationale de la Recherche (ANR). FRA., Jun 2015, Montpellier, France
Communication dans un congrès hal-02799117 v1

Effect of structuration and relatedness on power in Genome Wide Association Studies

Renaud Rincent , Laurence Moreau , Tristan Mary-Huard , Alain Charcosset
23. Eucarpia Maize and Sorghum conference on Genomics and Phenomics for Model-Based Maize and Sorghum Breeding, Jun 2015, Montpellier, France
Communication dans un congrès hal-02795514 v1
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Relatedness distribution estimation between individuals in multi-population panels

Fabien Laporte , Alain Charcosset , Tristan Mary-Huard
43rd European Mathematical Genetics Meeting (EMGM), Apr 2015, Brest, France. pp.1
Communication dans un congrès hal-01197652 v1

Les signatures isotopiques des dérégulations du métabolisme protéino-énergétique lors du développement d'un syndrome métabolique chez le rat

Nathalie Poupin , Jean-François Huneau , François Mariotti , Dominique D. Hermier , Tristan Mary-Huard et al.
1er séminaire Abondances Isotopiques Naturelles en Nutrition et Santé, Jan 2014, Paris, France
Communication dans un congrès hal-01598850 v1
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Two-dimensional segmentation for analyzing HiC data

Celine Levy Leduc , Maud Delattre , Tristan Mary-Huard , Stephane Robin
ECCB 2014: The 13th European Conference on Computational Biology, Sep 2014, Strasbourg, France. pp.386-392, ⟨10.1093/bioinformatics/btu443⟩
Communication dans un congrès hal-01148580 v1

P306: Un régime hyperprotéique pendant la gestation est un facteur de sensibilité de la progéniture femelle à la composition du régime après le sevrage chez le rat

C. Desclée Demaredsous , C. Delteil , Blachier F. , P. Barbillon , T. Mary-Huard et al.
12es Journées Francophones de Nutrition, JFN 2014, Dec 2014, Bruxelles, Belgique. pp.231
Communication dans un congrès hal-01568784 v1

d15N and d13C values in body pools are biomarkers of the protein-energy dysregulations of the metabolic syndrome onse

Nathalie Poupin , J.F. Huneau , Tristan Mary-Huard , J.P. Godin , D. Hermier et al.
GEOMED 1st workshop on biomedical application of geochemistry, Aug 2013, Gargonza, Italy
Communication dans un congrès hal-01562202 v1

Inbreeding effects on litter size and longevity in dogs

G. Leroy , B. Hedan , Xavier X Rognon , Florence Phocas , Etienne E. Verrier et al.
64th Annual Meeting European Association for Animal Production (EAAP), Aug 2013, Nantes France
Communication dans un congrès hal-01562186 v1

Les abondances isotopiques naturelles signent l’initiation nutritionnelle du syndrome métabolique.

Nathalie Poupin , François Mariotti , Jean-François Huneau , Tristan Mary-Huard , Jean-Philippe Godin et al.
Journées Francophones de Nutrition, Dec 2012, Lyon, France
Communication dans un congrès hal-01592265 v1

ExactDAS: An exact test procedure for the detection of differential alternative splicing

Tristan Mary-Huard , Florence Jaffrezic , Stéphane Robin
4th International Conference on Bioinformatics and Computational Biology (BICoB), Mar 2012, Las Vegas, United States
Communication dans un congrès hal-01587037 v1
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Embedded Variable Selection in Classification Trees

Servane Gey , Tristan Mary-Huard
GfKl 2011 : Joint Conference of the German Classification Society (GfKl) and the German Association for Pattern Recognition (DAG), Aug 2011, Francfort, Germany. n.p
Communication dans un congrès hal-01019767 v1

Statistical methodology for the analysis of multi-sample ChIP-chip experiments

Tristan Mary-Huard , Marie-Laure Martin-Magniette , Caroline Berard , Stephane Robin
25. International Biometric Conference, Dec 2010, Florianopolis, Brazil. 1 p
Communication dans un congrès hal-01197553 v1
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A statistical approach to detect chromosomal domains of gene expression

Tristan Mary-Huard , Stephane Robin
International Federation of Classification Societies 2009 Conference, Mar 2009, Dresde, Germany. 14 p
Communication dans un congrès hal-01197555 v1
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A clustering method for ordered variables to detect up-correlated genomic regions

Tristan Mary-Huard
IWSM 2009 : 24. International Workshop on Statistical Modelling, Jul 2009, Ithaca, United States. n.p
Communication dans un congrès hal-01197530 v1
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Wrapper aggregation for classification

Tristan Mary-Huard
ASMDA 2009 : 13. International Conference, Jun 2009, Vilnius, Lithuania. pp.47
Communication dans un congrès hal-01197558 v1
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ChIPmix: Mixture model of regressions for two-color ChIP-chip analysis

Tristan Mary-Huard , Marie-Laure Martin-Magniette , Caroline Berard , Stephane Robin
ECCB'08: 7. European Conference on Computational Biology, Sep 2008, Calgari, Italy. 19 p
Communication dans un congrès hal-01197548 v1
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Statistical methodology for the analysis of dye-switch microarray experiments

Tristan Mary-Huard , Julie Aubert , Nadera Mansouri , Olivier Sandra , Jean-Jacques Daudin
24. International Biometric Conference, Jul 2008, Dublin, Ireland. 17 p
Communication dans un congrès hal-01197571 v1

Compression pour la classification supervisée

Tristan Mary-Huard , Stephane S. Robin
Journées MAS: Modèles Spatiaux, Sep 2006, Lille, France. n.p
Communication dans un congrès hal-02816369 v1

Genomic prediction across two breeding cycles in maize silage using a factorial approach

Alizarine Lorenzi , Cyril Bauland , Tristan Mary-Huard , Sophie Pin , Carine Palaffre et al.
XVIII Eucarpia biometrics in plant breeding conference, Sep 2022, GIF-SUR-YVETTE, France
Poster de conférence hal-04458114 v1
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Improving genomic predictions with inbreeding and non-additive effects using two hybrid admixed populations in maize

Morgane Roth , Aurélien Beugnot , Tristan Mary-Huard , Laurence Moreau , Alain Charcosset et al.
Eucarpia Biometrics, Sep 2022, Gif-sur-Yvette, France. 2022
Poster de conférence hal-04132668 v1

Genome-wide hypermethylation of TEs and centromeres following low temperature exposure in B73

Zeineb Achour , Johann Joets , Martine Leguilloux , Hélène Sellier , Jean-Philippe Pichon et al.
61st Annual Maize Genetics Conference, Mar 2019, Saint Louis (Missouri), United States
Poster de conférence hal-04353514 v1

Efficient ReML inference in the Variance Component Mixed Models using Min-Max procedures

Tristan Mary-Huard , Fabien Laporte , Alain Charcosset
17. Meeting of the Eucarpia section biometrics in plant breeding, Sep 2018, Ghent, Belgium. 2018
Poster de conférence hal-02736285 v1

Sequence analysis of european maize inbred line F2 provides new insights into molecular and chromosomal characteristics of presence/absence variants.

A. Darracq , Clémentine Vitte , S. Nicolas , J. Duarte , J.P. Pichon et al.
60th Annual Maize Genetics Conference, Mar 2018, Saint-Malo, France
Poster de conférence hal-04478798 v1

Genome-wide SNP genotyping of DNA pools identifies original landraces to enrich maize breeding pools

Stephane S. Nicolas , Mariangela Arca , Tristan Mary-Huard , Marie-Christine Le Paslier , Cyril Bauland et al.
60. Annual Maize Genetics Conference, Mar 2018, Saint-Malo, France. , 253 p., 2018, 60th Annual Maize Genetics Conference Program and Abstracts
Poster de conférence hal-02733631 v1

Identifiability and Inference of Relatedness between Individuals

Tristan Mary-Huard , Alain Charcosset , Fabien Laporte
11. Meeting of the Eucarpia section biometrics in plant breeding, Sep 2018, Ghent, Belgium. 2015
Poster de conférence hal-02740107 v1
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Natural abundance of nitrogen isotopes in amino acids are biomarkers of the metabolic syndrome onset

Jean-François Huneau , Klaus-Jürgen Petzke , Nathalie Poupin , Tristan Mary-Huard , Olivier Mantha et al.
12th european nutrition conference, Oct 2015, Berlin, Germany. KARGER, 67, pp.1, 2015, Annals of Nutrition and Metabolism
Poster de conférence hal-01572322 v1