Xiaoyi Chen

24
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Identifiants chercheurs

Publications

Publications

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An Integrated Pipeline for Phenotypic Characterization, Clustering and Visualization of Patient Cohorts in a Rare Disease-Oriented Clinical Data Warehouse

Xiaoyi Chen , Junyuan Wang , Carole Faviez , Xiaomeng Wang , Marc Vincent et al.

Studies in Health Technology and Informatics, 2024, Studies in Health Technology and Informatics, 316, pp.1785-1789. ⟨10.3233/SHTI240777⟩

Article dans une revue hal-04726931v1
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Objectivizing issues in the diagnosis of complex rare diseases: lessons learned from testing existing diagnosis support systems on ciliopathies

Carole Faviez , Xiaoyi Chen , Nicolas Garcelon , Mohamad Zaidan , Katy Billot et al.

BMC Medical Informatics and Decision Making, 2024, 24 (1), pp.134. ⟨10.1186/s12911-024-02538-8⟩

Article dans une revue hal-04685782v1
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Performance and clinical utility of a new supervised machine-learning pipeline in detecting rare ciliopathy patients based on deep phenotyping from electronic health records and semantic similarity

Carole Faviez , Marc Vincent , Nicolas Garcelon , Olivia Boyer , Bertrand Knebelmann et al.

Orphanet Journal of Rare Diseases, 2024, 19 (1), pp.55. ⟨10.1186/s13023-024-03063-7⟩

Article dans une revue hal-04455861v1
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The genetic landscape and clinical spectrum of nephronophthisis and related ciliopathies

Friederike Petzold , Katy Billot , Xiaoyi Chen , Charline Henry , Emilie Filhol et al.

Kidney International, 2023, 104 (2), pp.378-387. ⟨10.1016/j.kint.2023.05.007⟩

Article dans une revue hal-04339478v1

Improving Patient Similarity Using Different Modalities of Phenotypes Extracted from Clinical Narratives

Xiaoyi Chen , Carole Faviez , Marc Vincent , Sophie Saunier , Nicolas Garcelon et al.

Studies in Health Technology and Informatics, 2023, Studies in Health Technology and Informatics, ⟨10.3233/SHTI230342⟩

Article dans une revue hal-04339484v1
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Assessment of the Early Detection of Anosmia and Ageusia Symptoms in COVID-19 on Twitter: Retrospective Study

Carole Faviez , Manissa Talmatkadi , Pierre Foulquié , Adel Mebarki , Stéphane Schück et al.

JMIR Infodemiology, 2023, 3, pp.e41863. ⟨10.2196/41863⟩

Article dans une revue hal-04227117v1

Patient-Patient Similarity-Based Screening of a Clinical Data Warehouse to Support Ciliopathy Diagnosis

Xiaoyi Chen , Carole Faviez , Marc Vincent , Luis Briseño-Roa , Hassan Faour et al.

Frontiers in Pharmacology, 2022, 13, ⟨10.3389/fphar.2022.786710⟩

Article dans une revue hal-03629207v1
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A Multi-Omics Common Data Model for Primary Immunodeficiencies

Mélanie Buy , William Digan , Xiaoyi Chen , Julien Husson , Mickael Ménager et al.

Studies in Health Technology and Informatics, 2022, Studies in Health Technology and Informatics, 290, pp.56-60. ⟨10.3233/SHTI220031⟩

Article dans une revue hal-04032071v1
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Fuzzy Matching for Symptom Detection in Tweets: Application to Covid-19 During the First Wave of the Pandemic in France

Carole Faviez , Pierre Foulquié , Xiaoyi Chen , Adel Mebarki , Sophie Quennelle et al.

Studies in Health Technology and Informatics, 2021, ⟨10.3233/shti210308⟩

Article dans une revue hal-03253247v1
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Differential association between inflammatory cytokines and multiorgan dysfunction in COVID-19 patients with obesity

Marie-Agnès Dragon-Durey , Xiaoyi Chen , Amos Kirilovsky , Nadine Ben Hamouda , Carine El Sissy et al.

PLoS ONE, 2021, 16 (5), pp.e0252026. ⟨10.1371/journal.pone.0252026⟩

Article dans une revue hal-03239731v1
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L'équipe-projet HeKA

Adrien Coulet , Stéphanie Allassonniere , François Angoulvant , Anita Burgun , Xiaoyi Chen et al.

Bulletin de l'Association Française pour l'Intelligence Artificielle, 2021, 112, pp.29-32

Article dans une revue hal-03485904v1
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Identification of Similar Patients Through Medical Concept Embedding from Electronic Health Records: A Feasibility Study for Rare Disease Diagnosis

Xiaoyi Chen , Carole Faviez , Marc Vincent , Nicolas Garcelon , Sophie Saunier et al.

Studies in Health Technology and Informatics, 2021, ⟨10.3233/shti210241⟩

Article dans une revue hal-03253313v1
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Concerns Discussed on Chinese and French Social Media During the COVID-19 Lockdown: Comparative Infodemiology Study Based on Topic Modeling

Stéphane Schück , Pierre Foulquié , Adel Mebarki , Carole Faviez , Mickaïl Khadhar et al.

JMIR Formative Research, 2021, 5 (4), pp.e23593. ⟨10.2196/23593⟩

Article dans une revue hal-03253371v1
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Analytical validation of the Immunoscore and its associated prognostic value in patients with colon cancer.

Florence Marliot , Xiaoyi Chen , Amos Kirilovsky , Thomas Sbarrato , Carine El Sissy et al.

Journal for Immunotherapy of Cancer, 2020, 8 (1), ⟨10.1136/jitc-2019-000272⟩

Article dans une revue hal-03023246v1
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Diagnosis support systems for rare diseases: a scoping review

Carole Faviez , Xiaoyi Chen , Nicolas Garcelon , Antoine Neuraz , Bertrand Knebelmann et al.

Orphanet Journal of Rare Diseases, 2020, 15 (1), pp.94. ⟨10.1186/s13023-020-01374-z⟩

Article dans une revue hal-02570643v1
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The Adverse Drug Reactions From Patient Reports in Social Media Project: Protocol for an Evaluation Against a Gold Standard

Armelle Arnoux-Guenegou , Yannick Girardeau , Xiaoyi Chen , Myrtille Deldossi , Rim Aboukhamis et al.

JMIR Research Protocols, 2019, 8 (5), pp.e11448. ⟨10.2196/11448⟩

Article dans une revue hal-03253382v1
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Phenotypic similarity for rare disease: ciliopathy diagnoses and subtyping

Xiaoyi Chen , Nicolas Garcelon , Antoine Neuraz , Katy Billot , Marc Lelarge et al.

Journal of Biomedical Informatics, 2019, 100, pp.103308. ⟨10.1016/j.jbi.2019.103308⟩

Article dans une revue hal-02893160v1

Mining Patients' Narratives in Social Media for Pharmacovigilance: Adverse Effects and Misuse of Methylphenidate

Xiaoyi Chen , Carole Faviez , Stéphane Schuck , Agnès Lillo-Le-Louët , Nathalie Texier et al.

Frontiers in Pharmacology, 2018, 9, pp.541. ⟨10.3389/fphar.2018.00541⟩

Article dans une revue hal-02103689v1

Mining Adverse Drug Reactions in Social Media with Named Entity Recognition and Semantic Methods.

Xiaoyi Chen , Myrtille Deldossi , Rim Aboukhamis , Carole Faviez , Badisse Dahamna et al.

Studies in Health Technology and Informatics, 2017, 245, pp.322-326. ⟨10.3233/978-1-61499-830-3-322⟩

Article dans une revue hal-03251581v1
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Automated flow cytometric analysis across large numbers of samples and cell types.

Xiaoyi Chen , Milena Hasan , Valentina Libri , Alejandra Urrutia , Benoît Beitz et al.

Clinical Immunology, 2015, 157 (2), pp.249-60. ⟨10.1016/j.clim.2014.12.009⟩

Article dans une revue pasteur-01341702v1

A Multi-Omics Common Data Model for Primary Immunodeficiencies

Mélanie Buy , William Digan , Xiaoyi Chen , Julien Husson , Mickael Ménager et al.

MEDINFO 2021: One World, One Health – Global Partnership for Digital Innovation, IOS Press, 2022, Studies in Health Technology and Informatics, ⟨10.3233/SHTI220031⟩

Chapitre d'ouvrage hal-03880502v1

Enriching UMLS-Based Phenotyping of Rare Diseases Using Deep-Learning: Evaluation on Jeune Syndrome

Carole Faviez , Marc Vincent , Nicolas Garcelon , Caroline Michot , Genevieve Baujat et al.

Challenges of Trustable AI and Added-Value on Health, 294, IOS Press; IOS Press, pp.844-848, 2022, Studies in Health Technology and Informatics, ⟨10.3233/SHTI220604⟩

Chapitre d'ouvrage hal-03790710v1
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Automated flow cytometric analysis across a large number of samples

Xiaoyi Chen

Functional Analysis [math.FA]. Université de Cergy Pontoise, 2015. English. ⟨NNT : 2015CERG0777⟩

Thèse tel-01346602v1